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Lcy05g012880 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g012880
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr05:15086005..15086367
RNA-Seq ExpressionLcy05g012880
SyntenyLcy05g012880
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7802971.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora]3.2e-1134.91Show/hide
Query:  PPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLW
        P ++E MAI  G+ L+  +GC ++ VESD+   I+ +    +  + +++L  EI +  + F  ++F++I R CN +AD I +KA+ +C N VW DS+PL+
Subjt:  PPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLW

Query:  IGELVY
        + E+++
Subjt:  IGELVY

KAF7810842.1 uncharacterized protein G2W53_031818 [Senna tora]6.0e-1033.64Show/hide
Query:  PPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLW
        P ++E MA+ EG+KL++ +GCN++ VE D+   ++ +    +  + ++++  +I +  S F  +SF+++ R CN  AD I+K AK +  N +W DS+PL+
Subjt:  PPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLW

Query:  IGELVYH
        + E  Y+
Subjt:  IGELVYH

KAF7819821.1 uncharacterized protein G2W53_025276 [Senna tora]1.6e-1034.91Show/hide
Query:  PPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLW
        P ++E MAI  G++L+  +GC +++VESD+   I+ +       + +++L  +I +  + F  +SF+++ R CN IAD I +KA+ +  N VW DS+PL+
Subjt:  PPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLW

Query:  IGELVY
        + E++Y
Subjt:  IGELVY

KAF7845416.1 uncharacterized protein G2W53_002321 [Senna tora]2.1e-1033.96Show/hide
Query:  PPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLW
        P ++E MAI  G+KL+  +GC ++ VESD+   I  +    +  + ++++  +I +    F ++SF+++ R CN +AD I++KA+ E  N VW DS+PL+
Subjt:  PPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLW

Query:  IGELVY
        + E+ +
Subjt:  IGELVY

XP_030969741.1 uncharacterized protein LOC115990018 [Quercus lobata]2.1e-1036.19Show/hide
Query:  VEMMAIIEGMKLSISLGCNNISVESDSLQTIN-FINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLWIG
        +E +A ++ ++ ++ +G N + +E DS   IN  ++G+ EL +   +++++IR  SSVF F+ F  +S +CN +AD +AKKAKS   +++W++ LP  I 
Subjt:  VEMMAIIEGMKLSISLGCNNISVESDSLQTIN-FINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLWIG

Query:  ELVYH
         LV H
Subjt:  ELVYH

TrEMBL top hitse value%identityAlignment
A0A0J8BAU9 Uncharacterized protein3.2e-0934.26Show/hide
Query:  DFAPPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSL
        D+     E  A++   + +I+ G +N+ +ESD+   IN IN   + R ++ +++E++  L   F  I FSF  R CN+IA  +AK A S  C++VW+   
Subjt:  DFAPPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSL

Query:  PLWIGELV
        P WI +L+
Subjt:  PLWIGELV

A0A1Q3CFW0 RVT_3 domain-containing protein (Fragment)3.2e-0938.24Show/hide
Query:  PPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLW
        PP +E +AI+  +K+S+  G   I +ESD    +N IN S    +   +++EEI+ + S F F  FS+ISR  NK+A  +AK A S   N V +D +P +
Subjt:  PPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLW

Query:  IG
        +G
Subjt:  IG

A0A200QAF3 Ribonuclease H domain2.7e-0837.5Show/hide
Query:  MVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLWIG
        + E+ A+ EGM+L+ +LG  ++ VESDS+ TINF N  S++   + +L+ +I Q+   F+ I F    R  N +AD +AK   ++  N  WI S P+ I 
Subjt:  MVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLWIG

Query:  ELVY
         L+Y
Subjt:  ELVY

A0A200QQM8 Ribonuclease H domain4.7e-0837.5Show/hide
Query:  MVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLWIG
        + E+ A+ EGM+L+ +LG  ++ VESDS+ TINF N  S++   + +L+ +I Q+   F+ I      R  N +AD +AK A ++  N  WI S P+ I 
Subjt:  MVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLWIG

Query:  ELVY
         L+Y
Subjt:  ELVY

A0A803QCV6 Uncharacterized protein7.9e-0832.38Show/hide
Query:  FAPPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLP
        ++  + E++A+  G++L+I        +++D ++  NF+ GSS+++ + S+L+EEI+   S  N ++   I R  NK A ++AK A S  CNK+W+   P
Subjt:  FAPPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLP

Query:  LWIGE
           GE
Subjt:  LWIGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein2.4e-0437.35Show/hide
Query:  APPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAK
        +P   E  AI   M  ++ L  +++ V SDS   ++ +N +  L NE+  L+ EIR + + F  ISF FI R  N IAD  AK
Subjt:  APPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAK

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.6e-0534.52Show/hide
Query:  PPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKA
        P M E +A+   ++ + S+G   +S+ SDS Q I  I   S    E   ++ +I  LS  F  +SFSF+ R+ N++AD +AK +
Subjt:  PPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTCGCCCCTCCAATGGTTGAGATGATGGCAATAATCGAAGGAATGAAGCTTAGTATATCGTTAGGATGCAATAATATCTCGGTTGAATCAGATAGCCTTCAAAC
AATCAATTTCATCAATGGGTCATCAGAGCTAAGGAATGAAATGAGTTCGTTAGTAGAGGAAATCAGGCAGTTATCCTCCGTTTTCAATTTTATTTCCTTTTCTTTCATTT
CAAGGAACTGTAACAAGATAGCTGATACTATTGCAAAAAAAGCGAAATCAGAATGTTGTAATAAGGTTTGGATTGATAGCCTCCCTCTGTGGATAGGCGAGCTGGTTTAT
CATGGCCATTCTTCTTCCGCCCAAGTGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTCGCCCCTCCAATGGTTGAGATGATGGCAATAATCGAAGGAATGAAGCTTAGTATATCGTTAGGATGCAATAATATCTCGGTTGAATCAGATAGCCTTCAAAC
AATCAATTTCATCAATGGGTCATCAGAGCTAAGGAATGAAATGAGTTCGTTAGTAGAGGAAATCAGGCAGTTATCCTCCGTTTTCAATTTTATTTCCTTTTCTTTCATTT
CAAGGAACTGTAACAAGATAGCTGATACTATTGCAAAAAAAGCGAAATCAGAATGTTGTAATAAGGTTTGGATTGATAGCCTCCCTCTGTGGATAGGCGAGCTGGTTTAT
CATGGCCATTCTTCTTCCGCCCAAGTGGCATGA
Protein sequenceShow/hide protein sequence
MDFAPPMVEMMAIIEGMKLSISLGCNNISVESDSLQTINFINGSSELRNEMSSLVEEIRQLSSVFNFISFSFISRNCNKIADTIAKKAKSECCNKVWIDSLPLWIGELVY
HGHSSSAQVA