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Lcy05g013180 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g013180
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionATP-dependent DNA helicase
Genome locationChr05:15574883..15575328
RNA-Seq ExpressionLcy05g013180
SyntenyLcy05g013180
Gene Ontology termsGO:0000723 - telomere maintenance (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0003678 - DNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR010285 - DNA helicase Pif1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136446.2 ATP-dependent DNA helicase PIF1-like [Cucumis sativus]1.0e-2257.01Show/hide
Query:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNES-------------------------ENDEDAVMKLLNIVYPDLQQN
        MAKK  IEAVDRTFRDIMD  +P GGKVVVFGGDFRQVLP+VP+ATRQQT NES                          N+ED+++KLLNIVY DL+ +
Subjt:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNES-------------------------ENDEDAVMKLLNIVYPDLQQN

Query:  ATSTEYI
        ATS  Y+
Subjt:  ATSTEYI

XP_009782853.1 PREDICTED: ATP-dependent DNA helicase pfh1-like [Nicotiana sylvestris]1.6e-1544.66Show/hide
Query:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNESEN--DEDAVM-----------------KLLNIVYPDLQQNATSTEY
        MA++ TIE +DR+FRDIMD  +PFGGKV+VFGGDFRQVLPVVP+ATR +TVN S +   +D ++                 +L+  ++P L +N +  +Y
Subjt:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNESEN--DEDAVM-----------------KLLNIVYPDLQQNATSTEY

Query:  IEQ
        + +
Subjt:  IEQ

XP_022152307.1 ATP-dependent DNA helicase PIF1-like [Momordica charantia]7.7e-2651.08Show/hide
Query:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNES----------------------------------------------
        MAKK TIEAVDRTFRDIMD T+PFGGK+VVFGGDFRQVLPVVPRATRQQT+NES                                              
Subjt:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNES----------------------------------------------

Query:  -----------ENDEDAVMKLLNIVYPDLQQNATSTEYI
                   ENDE A+MKLLN+VYPDL+QNATS+EY+
Subjt:  -----------ENDEDAVMKLLNIVYPDLQQNATSTEYI

XP_022155233.1 ATP-dependent DNA helicase PIF1-like [Momordica charantia]4.4e-2147.83Show/hide
Query:  AKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNES-----------------------------------------------
        AKK TIEAVDRTF+DIM+ ++PFGGKV+VFGGDFRQVLPVVPRATRQQTV+ES                                               
Subjt:  AKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNES-----------------------------------------------

Query:  ----------ENDEDAVMKLLNIVYPDLQQNATSTEYI
                  E  ED+V+KLLNIVYPDL QNA S EYI
Subjt:  ----------ENDEDAVMKLLNIVYPDLQQNATSTEYI

XP_022156991.1 uncharacterized protein LOC111023820 [Momordica charantia]1.2e-1576.47Show/hide
Query:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTV
        MAK+ TIE++DR+FRDIMDC QPFGGK+++FGGDFRQVLPV+P+ TRQQTV
Subjt:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTV

TrEMBL top hitse value%identityAlignment
A0A1U7WW73 ATP-dependent DNA helicase7.8e-1644.66Show/hide
Query:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNESEN--DEDAVM-----------------KLLNIVYPDLQQNATSTEY
        MA++ TIE +DR+FRDIMD  +PFGGKV+VFGGDFRQVLPVVP+ATR +TVN S +   +D ++                 +L+  ++P L +N +  +Y
Subjt:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNESEN--DEDAVM-----------------KLLNIVYPDLQQNATSTEY

Query:  IEQ
        + +
Subjt:  IEQ

A0A5B7A9C3 ATP-dependent DNA helicase5.1e-1538.85Show/hide
Query:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNES----------------------------------------------
        MAK+  IE +DRT RDIM+  + FGGKV+VFGGDFRQVLPVVPRATR++TVN S                                              
Subjt:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNES----------------------------------------------

Query:  -----------ENDEDAVMKLLNIVYPDLQQNATSTEYI
                   ENDE +  KL++ +YP L+QNA S EY+
Subjt:  -----------ENDEDAVMKLLNIVYPDLQQNATSTEYI

A0A6J1DFU4 ATP-dependent DNA helicase3.8e-2651.08Show/hide
Query:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNES----------------------------------------------
        MAKK TIEAVDRTFRDIMD T+PFGGK+VVFGGDFRQVLPVVPRATRQQT+NES                                              
Subjt:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNES----------------------------------------------

Query:  -----------ENDEDAVMKLLNIVYPDLQQNATSTEYI
                   ENDE A+MKLLN+VYPDL+QNATS+EY+
Subjt:  -----------ENDEDAVMKLLNIVYPDLQQNATSTEYI

A0A6J1DMF2 ATP-dependent DNA helicase2.1e-2147.83Show/hide
Query:  AKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNES-----------------------------------------------
        AKK TIEAVDRTF+DIM+ ++PFGGKV+VFGGDFRQVLPVVPRATRQQTV+ES                                               
Subjt:  AKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNES-----------------------------------------------

Query:  ----------ENDEDAVMKLLNIVYPDLQQNATSTEYI
                  E  ED+V+KLLNIVYPDL QNA S EYI
Subjt:  ----------ENDEDAVMKLLNIVYPDLQQNATSTEYI

A0A6J1DWM7 ATP-dependent DNA helicase6.0e-1676.47Show/hide
Query:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTV
        MAK+ TIE++DR+FRDIMDC QPFGGK+++FGGDFRQVLPV+P+ TRQQTV
Subjt:  MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAAAAATGCACAATAGAAGCAGTTGATAGAACCTTCAGAGATATAATGGATTGTACTCAACCATTTGGTGGAAAAGTTGTTGTATTTGGAGGAGATTTTCGACA
AGTGTTGCCTGTAGTTCCACGAGCAACAAGACAACAGACTGTTAATGAAAGTGAAAATGATGAAGATGCAGTAATGAAGTTACTAAATATTGTATATCCTGATCTCCAGC
AAAATGCAACTTCAACAGAATACATTGAACAGGGCAATTTTATCAACTACAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAAAAATGCACAATAGAAGCAGTTGATAGAACCTTCAGAGATATAATGGATTGTACTCAACCATTTGGTGGAAAAGTTGTTGTATTTGGAGGAGATTTTCGACA
AGTGTTGCCTGTAGTTCCACGAGCAACAAGACAACAGACTGTTAATGAAAGTGAAAATGATGAAGATGCAGTAATGAAGTTACTAAATATTGTATATCCTGATCTCCAGC
AAAATGCAACTTCAACAGAATACATTGAACAGGGCAATTTTATCAACTACAAATGA
Protein sequenceShow/hide protein sequence
MAKKCTIEAVDRTFRDIMDCTQPFGGKVVVFGGDFRQVLPVVPRATRQQTVNESENDEDAVMKLLNIVYPDLQQNATSTEYIEQGNFINYK