CuGenDBv2

Gene ID	Lcy05g013190
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ATP-dependent DNA helicase
Genome location	Chr05:15575562..15575855
RNA-Seq Expression	Lcy05g013190
Synteny	Lcy05g013190
Gene Ontology terms	GO:0000723 - telomere maintenance (biological process) GO:0006281 - DNA repair (biological process) GO:0006310 - DNA recombination (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0003678 - DNA helicase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

XP_012829391.1 PREDICTED: uncharacterized protein LOC105950571 [Erythranthe guttata]

8.6e-39

77.55

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Query:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK
        MVC++F+ N+++AEI  GQ+  K VF+PRIP+SPA +EGYPFKFKRKQFP+RLCFAMTINKAQGQTIPNVGVYLPQ+VFSHGQLYVALSRG SM+ TK
Subjt:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK

XP_012837726.1 PREDICTED: uncharacterized protein LOC105958267 [Erythranthe guttata]

3.0e-39

80.61

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Query:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK
        MVCR F+ N+I AEI  GQ++GK VF+PRIP+SPA +EGYPFKFKRKQFP+RLCFAMTINKAQGQTI NVGVYLPQ+VFSHGQLYVALSRGISM+ TK
Subjt:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK

XP_012841028.1 PREDICTED: uncharacterized protein LOC105961341 [Erythranthe guttata]

1.5e-38

79.59

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Query:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK
        MVCR F+ N+I AEI  GQ+ GK VF+PRIP+SPA +EGYPFKFKRKQFPIRLCFAMTINKAQGQTIPN+GVYLPQ VFSHGQLYVALSRG S + TK
Subjt:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK

XP_022152307.1 ATP-dependent DNA helicase PIF1-like [Momordica charantia]

2.7e-48

97.96

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Query:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK
        MVCREFRKNIIYAEIT GQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMA TK
Subjt:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK

XP_022159149.1 ATP-dependent DNA helicase PIF1-like [Momordica charantia]

3.1e-44

89.8

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Query:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK
        MVCR+F+KN+I AEIT+GQ+AGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVG+YLPQ+VFSHGQLYVALSRGIS A TK
Subjt:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK

TrEMBL top hits

e value

%identity

Alignment

A0A5B7A5M4 ATP-dependent DNA helicase (Fragment)

7.6e-41

83.67

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Query:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK
        MVCR F  N+I+AEIT GQ+AGKQV LPRIP+SPA +EGYPF+FKRKQFPIRLCFAMTINKAQGQTIP VGVYLPQ+VFSHGQLYVALSRGISM+ TK
Subjt:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK

A0A5B7A9C3 ATP-dependent DNA helicase

5.8e-41

83.67

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Query:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK
        MVCR F  N+I+AEIT GQ+AGKQV LPRIP+SPA +EGYPF+FKRKQFPIRLCFAMTINKAQGQTIP VGVYLPQ+VFSHGQLYVALSRGISM+ TK
Subjt:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK

A0A6A6KMX4 ATP-dependent DNA helicase

2.7e-38

79.59

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Query:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK
        MVC+ F  NII+AE T GQ++GK VFLPRIP+SPA +E YPF+FKRKQFPIRLCFA TINKAQGQ IPNVGVYLP++VFSHGQLYVALSRGISM+ITK
Subjt:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK

A0A6J1DFU4 ATP-dependent DNA helicase

1.3e-48

97.96

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Query:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK
        MVCREFRKNIIYAEIT GQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMA TK
Subjt:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK

A0A6J1E1J0 ATP-dependent DNA helicase

1.5e-44

89.8

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Query:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK
        MVCR+F+KN+I AEIT+GQ+AGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVG+YLPQ+VFSHGQLYVALSRGIS A TK
Subjt:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK

SwissProt top hits

e value

%identity

Alignment

A6ZM04 ATP-dependent DNA helicase PIF1

7.6e-06

47.37

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Query:  DEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGIS
        DE       R Q P+ L ++++I+K+QGQT+P V V L + VF  GQ YVALSR +S
Subjt:  DEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGIS

P07271 ATP-dependent DNA helicase PIF1

7.6e-06

47.37

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Query:  DEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGIS
        DE       R Q P+ L ++++I+K+QGQT+P V V L + VF  GQ YVALSR +S
Subjt:  DEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGIS

P38766 ATP-dependent DNA helicase RRM3

1.8e-07

40.7

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Query:  YAEITAGQNAG-KQVFLP-RIPMS-PANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISM
        Y   T G+N    ++ +P R P+  P  + G     +R Q P+ LC+A++I+KAQGQTI  + V L + +F  GQ+YVALSR ++M
Subjt:  YAEITAGQNAG-KQVFLP-RIPMS-PANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISM

Q38CE9 ATP-dependent DNA helicase PIF6

3.7e-08

42.25

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Query:  NAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSR
        + G++V +PR+ M     EG      R Q P++L +A+T+++AQG T+P V V L +  F  GQ YVALSR
Subjt:  NAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSR

Q59RQ0 ATP-dependent DNA helicase PIF1

1.7e-05

44.07

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Query:  DEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMA
        DE       R QFP+ L ++++I+K+QGQT+  V V + + +F +GQ YVALSR +S A
Subjt:  DEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMA

Arabidopsis top hits

e value

%identity

Alignment

AT3G51690.1 PIF1 helicase

1.1e-15

43.68

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Query:  IIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHG-QLYVALSRGISMA
        ++ A I AG   GK++++PRI   P  +  +P + +R Q+P++L FAMTI+++Q  T+  VG+YLP+ VFSHG Q++VA+S+  S A
Subjt:  IIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHG-QLYVALSRGISMA

AT3G51700.1 PIF1 helicase

6.8e-18

46.51

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Query:  IIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMA
        ++ A I  G N G++V +PRIP S   +  +P K +R+QFP++L FAMTI+++Q QT+  VG+YLP+ +  HGQ YVA+S+  S A
Subjt:  IIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMA

AT5G28780.1 PIF1 helicase

2.8e-19

48.89

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Query:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSR
        ++     + +I A+I  G +AGK V +PR  +SP   E +PF  +R+QFP+R+C+AMTI K QGQ++ +  +YLP  VFSH QLYVALSR
Subjt:  MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSR

Sequences

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CDS sequence

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ATGGTTTGTCGTGAATTTCGCAAAAACATCATTTATGCAGAAATCACAGCTGGACAAAATGCAGGAAAACAAGTTTTTCTTCCACGTATACCTATGAGTCCTGCAAATGA
TGAAGGATATCCATTCAAATTCAAGAGAAAACAGTTTCCAATACGACTTTGCTTTGCAATGACAATTAATAAGGCTCAAGGACAGACAATACCAAACGTTGGAGTTTATC
TTCCCCAAAATGTTTTTTCGCATGGCCAACTATATGTGGCACTTTCAAGGGGCATCTCTATGGCAATAACAAAG

mRNA sequence

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Protein sequence

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MVCREFRKNIIYAEITAGQNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGVYLPQNVFSHGQLYVALSRGISMAITK

Lcy05g013190 (gene) of Sponge gourd (P93075) v1 genome