CuGenDBv2

Gene ID	Lcy05g013360
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	Chr05:15893622..15894236
RNA-Seq Expression	Lcy05g013360
Synteny	Lcy05g013360
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.6e-31

39.11

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Query:  PSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHHVEYLCF
        P+NF    +   LWK + PKKCK FIW++IH  +NT DRLQK+     L+P+ C +C  ++E ++HL +HC ++ +  S+  +A+   +S P  V+ L  
Subjt:  PSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHHVEYLCF

Query:  EAFATSSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL
           + + R+QK ++  N     LW +W ERNNR+F+ + +    LWED+L+    W  KSK + NYD  SIALN  AF+
Subjt:  EAFATSSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.9e-33

39.06

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Query:  SPTNSARYCLRDHPSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGI
        SPTN        HPS      +   LWK D PKKCK FIW++IH  +NT DRLQK+     L+P+ C +C  ++E ++HL +HC ++ +  S+  QA+  
Subjt:  SPTNSARYCLRDHPSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGI

Query:  QSSAPHHVEYLCFEAFATSSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL
         +S P+ V+ L     + + ++QK ++  N     LW +W ERNNR+F+ + +    LWED L+    W  KSK + NYD  SIALN  AF+
Subjt:  QSSAPHHVEYLCFEAFATSSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.9e-33

39.06

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Query:  SPTNSARYCLRDHPSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGI
        SPTN        HPS      +   LWK D PKKCK FIW++IH  +NT DRLQK+     L+P+ C +C  ++E ++HL +HC ++ +  S+  QA+  
Subjt:  SPTNSARYCLRDHPSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGI

Query:  QSSAPHHVEYLCFEAFATSSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL
         +S P+ V+ L     + + ++QK ++  N     LW +W ERNNR+F+ + +    LWED L+    W  KSK + NYD  SIALN  AF+
Subjt:  QSSAPHHVEYLCFEAFATSSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL

KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

6.2e-31

39.29

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Query:  LLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHHVEYLCFEAFATSSRS
        L +LW+S +P+KCK FIW+++H++LNTMD++QK+   M LNPS C  C+ + E ++HL + C +A    +      G    A  +V+ LC +    S R+
Subjt:  LLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHHVEYLCFEAFATSSRS

Query:  QKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKA
         K+++  N  + TLW +W  RNN +F +K  + +  WED  +L   W +KSK   NY  A+IALN KA
Subjt:  QKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKA

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

5.2e-30

38.01

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Query:  LLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAP---HHVEYLCFEAFATS
        L +LW+S +P+KCK FIW+++H++LNTMD +QK+   M LNPS C  C+ + E ++HL + C     F   L+     ++  P    +V+ LC +    +
Subjt:  LLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAP---HHVEYLCFEAFATS

Query:  SRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKA
         R+ K+++  N  + TLW +W  RNN +F +K  + +  WED  +L   W +KSK   NY  A+IALN KA
Subjt:  SRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein

7.9e-32

39.11

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Query:  PSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHHVEYLCF
        P+NF    +   LWK + PKKCK FIW++IH  +NT DRLQK+     L+P+ C +C  ++E ++HL +HC ++ +  S+  +A+   +S P  V+ L  
Subjt:  PSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHHVEYLCF

Query:  EAFATSSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL
           + + R+QK ++  N     LW +W ERNNR+F+ + +    LWED+L+    W  KSK + NYD  SIALN  AF+
Subjt:  EAFATSSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein

1.9e-33

39.06

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Query:  SPTNSARYCLRDHPSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGI
        SPTN        HPS      +   LWK D PKKCK FIW++IH  +NT DRLQK+     L+P+ C +C  ++E ++HL +HC ++ +  S+  QA+  
Subjt:  SPTNSARYCLRDHPSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGI

Query:  QSSAPHHVEYLCFEAFATSSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL
         +S P+ V+ L     + + ++QK ++  N     LW +W ERNNR+F+ + +    LWED L+    W  KSK + NYD  SIALN  AF+
Subjt:  QSSAPHHVEYLCFEAFATSSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein

1.9e-33

39.06

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Query:  SPTNSARYCLRDHPSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGI
        SPTN        HPS      +   LWK D PKKCK FIW++IH  +NT DRLQK+     L+P+ C +C  ++E ++HL +HC ++ +  S+  QA+  
Subjt:  SPTNSARYCLRDHPSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGI

Query:  QSSAPHHVEYLCFEAFATSSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL
         +S P+ V+ L     + + ++QK ++  N     LW +W ERNNR+F+ + +    LWED L+    W  KSK + NYD  SIALN  AF+
Subjt:  QSSAPHHVEYLCFEAFATSSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein

2.5e-30

38.01

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Query:  LLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAP---HHVEYLCFEAFATS
        L +LW+S +P+KCK FIW+++H++LNTMD +QK+   M LNPS C  C+ + E ++HL + C     F   L+     ++  P    +V+ LC +    +
Subjt:  LLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAP---HHVEYLCFEAFATS

Query:  SRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKA
         R+ K+++  N  + TLW +W  RNN +F +K  + +  WED  +L   W +KSK   NY  A+IALN KA
Subjt:  SRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKA

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein

3.0e-31

39.29

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Query:  LLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHHVEYLCFEAFATSSRS
        L +LW+S +P+KCK FIW+++H++LNTMD++QK+   M LNPS C  C+ + E ++HL + C +A    +      G    A  +V+ LC +    S R+
Subjt:  LLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHHVEYLCFEAFATSSRS

Query:  QKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKA
         K+++  N  + TLW +W  RNN +F +K  + +  WED  +L   W +KSK   NY  A+IALN KA
Subjt:  QKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G25270.1 Ribonuclease H-like superfamily protein

2.4e-09

29.22

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Query:  LWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHH-------VEYLCFEAFAT
        +WK     K K F+W ++   L T D L+++    + N   C  C   +E+  HL   C +A     ++++A GI    PH              E   +
Subjt:  LWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHH-------VEYLCFEAFAT

Query:  SSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKS----------RNLVQLWEDS
        S  + +     N+ +  LW LWK RN  VFQ KS          RN VQ WED+
Subjt:  SSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKS----------RNLVQLWEDS

AT3G25720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

8.9e-04

26.09

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Query:  SNFW------LGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSA-PHH
        + FW       GP+L+++  +  P + +I I        +  D  Q    G+ ++P +CCLC    E+ DHLL+ C+++    S +   + + S    + 
Subjt:  SNFW------LGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSA-PHH

Query:  VEYLCFEAFATSSRSQKDVLRINIFVPTLWNLWKERNN
         E L +     SS S    LR  +    ++  WK+RNN
Subjt:  VEYLCFEAFATSSRSQKDVLRINIFVPTLWNLWKERNN

Sequences

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CDS sequence

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ATGCTTTGCGTTGGATCCCCTCTTCAGATGGCGTTTTCTCCCACCAATTCTGCCCGCTACTGCTTGAGAGATCATCCCTCTAATTTTTGGTTAGGACCTATGCTCTTAAA
TTTATGGAAATCTGATTTGCCAAAGAAGTGCAAAATTTTCATTTGGTCAGTCATCCACAGAAGGCTAAATACAATGGACAGATTACAAAAGAAATTCCAAGGGATGATGC
TCAACCCATCCATCTGCTGCCTATGCAAAGGTAACGAGGAATCTTTAGACCACCTTTTAGTTCATTGTAACTGGGCATATGAATTTCGCTCTCGCCTTTACCAAGCTATT
GGAATTCAATCGTCGGCCCCTCACCATGTCGAATATCTTTGCTTCGAAGCTTTTGCCACTTCGTCTCGCTCTCAAAAGGACGTGCTTAGAATCAACATTTTTGTACCGAC
CCTCTGGAACCTGTGGAAAGAGCGAAACAATCGGGTTTTTCAGAACAAGTCCCGTAACCTTGTGCAACTCTGGGAAGATTCTCTATCGCTTGCGGCTTTTTGGCCTACCA
AGTCTAAATTTTACATGAATTATGATTCGGCATCCATTGCTCTTAATTGGAAGGCTTTTTTGTAA

mRNA sequence

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Protein sequence

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MLCVGSPLQMAFSPTNSARYCLRDHPSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAI
GIQSSAPHHVEYLCFEAFATSSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL

Lcy05g013360 (gene) of Sponge gourd (P93075) v1 genome