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Lcy05g013450 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g013450
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein RADIALIS-like 1
Genome locationChr05:16102189..16102434
RNA-Seq ExpressionLcy05g013450
SyntenyLcy05g013450
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645640.1 hypothetical protein Csa_020521 [Cucumis sativus]4.0e-2675.61Show/hide
Query:  MASMSAHG-SSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSCH
        MASM+AHG S++WT  +NKAFEKALAV+D+DTPERW NVAKAIGGKT +EVK+HY+ LVEDVKHIESG+IPFPY  S RS H
Subjt:  MASMSAHG-SSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSCH

XP_008447026.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]4.8e-2775.95Show/hide
Query:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRS
        MASMSAHGS+ WTA+ENKAFEKALA++D+DTPERW NVAKAIGGKT ++VK HY+ L+EDV HIE+GQIPFPY  S RS
Subjt:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRS

XP_022136064.1 protein RADIALIS-like 1 [Momordica charantia]6.2e-2776.54Show/hide
Query:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSCH
        MASMS+HGSS+WTA +NKAFEKALAV+D+DTPERW NVAKA+GGKTA+EVK HYE LVEDVK IESGQ+ FPY TS    H
Subjt:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSCH

XP_022952660.1 protein RADIALIS-like 1 [Cucurbita moschata]1.6e-2780Show/hide
Query:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSC
        MASMSAHGSS+WTA ENKAFEKALAVFD+DTPERW NVAKAIGGKT  EVK HY+ LV+DVKHIESG+I FPY +S R C
Subjt:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSC

XP_022972544.1 protein RADIALIS-like 1 [Cucurbita maxima]4.8e-2778.75Show/hide
Query:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSC
        MASMSAHGSS+WTA ENKAFEKALAVFD+DTP+RW NVAKAIGGKT  EVK HY+ LV DVKHIESG+I FPY +S R C
Subjt:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSC

TrEMBL top hitse value%identityAlignment
A0A0A0K3K0 SANT domain-containing protein2.1e-2879.75Show/hide
Query:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRS
        MASMSAHGSS+WTA+ENKAFEKALA++D+DTPERW NVAKAIGGKT +EVK HY+ L+EDV HIESGQIPFPY  S RS
Subjt:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRS

A0A1S3BGF0 protein RADIALIS-like 12.3e-2775.95Show/hide
Query:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRS
        MASMSAHGS+ WTA+ENKAFEKALA++D+DTPERW NVAKAIGGKT ++VK HY+ L+EDV HIE+GQIPFPY  S RS
Subjt:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRS

A0A6J1C385 protein RADIALIS-like 13.0e-2776.54Show/hide
Query:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSCH
        MASMS+HGSS+WTA +NKAFEKALAV+D+DTPERW NVAKA+GGKTA+EVK HYE LVEDVK IESGQ+ FPY TS    H
Subjt:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSCH

A0A6J1GKV1 protein RADIALIS-like 17.9e-2880Show/hide
Query:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSC
        MASMSAHGSS+WTA ENKAFEKALAVFD+DTPERW NVAKAIGGKT  EVK HY+ LV+DVKHIESG+I FPY +S R C
Subjt:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSC

A0A6J1I8Y0 protein RADIALIS-like 12.3e-2778.75Show/hide
Query:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSC
        MASMSAHGSS+WTA ENKAFEKALAVFD+DTP+RW NVAKAIGGKT  EVK HY+ LV DVKHIESG+I FPY +S R C
Subjt:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSC

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 19.7e-2359.49Show/hide
Query:  ASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSC
        +SMS+  S SWTA +NKAFE+ALA +D+DTP RWQNVAK +GGKT +EVK HYE LV+D+  IE+G +PFP   ++  C
Subjt:  ASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSC

Q58FS3 Transcription factor RADIALIS4.5e-2063.89Show/hide
Query:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFP
        MAS    G   W+A ENKAFE+ALAV+D+DTP+RW NVA+A+ G+T +EVK HYE LVED+K+IESG++PFP
Subjt:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFP

Q6NNN0 Protein RADIALIS-like 39.1e-2158.02Show/hide
Query:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSCH
        MAS S   S+SWT  ENK FE+ALA +D+DTP+RW NVA+A+GGK+A+EV+ HYE L+ DV  IESG+ P P   SN + H
Subjt:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSCH

Q8GW75 Protein RADIALIS-like 54.5e-2062.5Show/hide
Query:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFP
        MAS S   SSSWT+ +NK FE+ALAV+D+DTP+RWQNVAKA+G K+A+EVK HY+ LVED+ +IE   +P P
Subjt:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFP

Q9SIJ5 Protein RADIALIS-like 25.3e-2161.43Show/hide
Query:  SMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFP
        SMS++GS SWT  +NKAFE+ALAV+D+DTP+RW NVA+A+GGKT +E K  Y+ LV D++ IE+G +PFP
Subjt:  SMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFP

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.2e-2162.5Show/hide
Query:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFP
        MAS S   SSSWT+ +NK FE+ALAV+D+DTP+RWQNVAKA+G K+A+EVK HY+ LVED+ +IE   +P P
Subjt:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFP

AT1G75250.1 RAD-like 61.2e-2061.11Show/hide
Query:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFP
        MAS S    S WT  +NK FE+ALAV+D+DTP+RW NVAKA+GGKT +EVK HY+ LVED+ +IE+G++P P
Subjt:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFP

AT1G75250.2 RAD-like 61.2e-2061.11Show/hide
Query:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFP
        MAS S    S WT  +NK FE+ALAV+D+DTP+RW NVAKA+GGKT +EVK HY+ LVED+ +IE+G++P P
Subjt:  MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFP

AT2G21650.1 Homeodomain-like superfamily protein3.8e-2261.43Show/hide
Query:  SMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFP
        SMS++GS SWT  +NKAFE+ALAV+D+DTP+RW NVA+A+GGKT +E K  Y+ LV D++ IE+G +PFP
Subjt:  SMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFP

AT4G39250.1 RAD-like 16.9e-2459.49Show/hide
Query:  ASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSC
        +SMS+  S SWTA +NKAFE+ALA +D+DTP RWQNVAK +GGKT +EVK HYE LV+D+  IE+G +PFP   ++  C
Subjt:  ASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCAGCTCATGGGTCTAGTTCTTGGACTGCGGTGGAAAACAAAGCGTTTGAGAAAGCTTTAGCAGTGTTTGATGAAGACACACCTGAGCGATGGCAGAA
TGTTGCGAAGGCCATTGGTGGCAAAACCGCACAAGAAGTGAAGACACATTATGAACGTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTCAAATTCCATTCCCATACC
CAACCTCCAACAGATCATGTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCAGCTCATGGGTCTAGTTCTTGGACTGCGGTGGAAAACAAAGCGTTTGAGAAAGCTTTAGCAGTGTTTGATGAAGACACACCTGAGCGATGGCAGAA
TGTTGCGAAGGCCATTGGTGGCAAAACCGCACAAGAAGTGAAGACACATTATGAACGTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTCAAATTCCATTCCCATACC
CAACCTCCAACAGATCATGTCATTGA
Protein sequenceShow/hide protein sequence
MASMSAHGSSSWTAVENKAFEKALAVFDEDTPERWQNVAKAIGGKTAQEVKTHYERLVEDVKHIESGQIPFPYPTSNRSCH