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Lcy05g013530 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g013530
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein RADIALIS-like 3
Genome locationChr05:16207603..16209704
RNA-Seq ExpressionLcy05g013530
SyntenyLcy05g013530
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572047.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]1.6e-4293.75Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MA+SSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHYEILLEDLRRIESG VPIPNYRG  NGDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

XP_022952671.1 protein RADIALIS-like 3 [Cucurbita moschata]1.3e-4294.79Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHYEILLEDL RIESGRVPIPNYRG  NGDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

XP_022975322.1 protein RADIALIS-like 3 [Cucurbita maxima]9.6e-4394.79Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERW NIA AVGGKSADEVKRHYEILLEDL+RIESGRVPIPNYRGA NGDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

XP_023554816.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]6.7e-4496.88Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGA NGDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

XP_038888995.1 protein RADIALIS-like 3 isoform X1 [Benincasa hispida]2.1e-4292.71Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERW NIA AVGGKS DEVKRHYE+LLEDLRRIESGRVPIPNYRG GN DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

TrEMBL top hitse value%identityAlignment
A0A0A0K2A2 SANT domain-containing protein7.4e-4190.62Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERWQNIA AVGGKSADEV+RHYEILLEDLRRIESGRVPIPNYR   N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

A0A1S3BHB0 protein RADIALIS-like 32.6e-4190.62Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERWQNIA AVGGKSADEV+RHYEILLEDLR+IESGRVPIPNYRG  N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

A0A6J1C2H2 protein RADIALIS-like 36.7e-4291Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR----GAGNGDEELRLLKYLKLQ
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIA AVGGKSADEVKRHY+ILLEDLRRIESGRVPIPNYR     AGN DEELRLLKYLKL+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR----GAGNGDEELRLLKYLKLQ

A0A6J1GKW1 protein RADIALIS-like 36.1e-4394.79Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHYEILLEDL RIESGRVPIPNYRG  NGDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

A0A6J1ICR6 protein RADIALIS-like 34.7e-4394.79Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERW NIA AVGGKSADEVKRHYEILLEDL+RIESGRVPIPNYRGA NGDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 15.5e-2555.45Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG---NG--DEELRLLKYLKL
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+AK VGGK+ +EVKRHYE+L++D+  IE+G VP PNYR +G   NG   +E + ++ ++L
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG---NG--DEELRLLKYLKL

Query:  Q
        Q
Subjt:  Q

Q1A173 Protein RADIALIS-like 61.0e-2355Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR-----GAGNGDEELRLLKYLKL
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+AKAVGGK+ +EVKRHY+IL+EDL  IE+GRVP+PNY+          D + R +K LK+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR-----GAGNGDEELRLLKYLKL

Q58FS3 Transcription factor RADIALIS7.4e-2264.18Show/hide
Query:  WTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG
        W+AK+NK FE+ALA+YDK+TP+RW N+A+AV G++ +EVK+HYEIL+ED++ IESG+VP PNYR  G
Subjt:  WTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG

Q6NNN0 Protein RADIALIS-like 33.6e-2462.2Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGN
        MAS+S+      A+WT K+NKLFE+ALA YD++TP+RW N+A+AVGGKSA+EV+RHYE+L+ D+  IESGR P PNYR  GN
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGN

Q8GW75 Protein RADIALIS-like 51.9e-2555.34Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNY-------RGAGNGDEELRLLKYL
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+AKAVG KSA+EVKRHY+IL+EDL  IE   VP+P Y       +  G  D +LRL+K +
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNY-------RGAGNGDEELRLLKYL

Query:  KLQ
        ++Q
Subjt:  KLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.3e-2655.34Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNY-------RGAGNGDEELRLLKYL
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+AKAVG KSA+EVKRHY+IL+EDL  IE   VP+P Y       +  G  D +LRL+K +
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNY-------RGAGNGDEELRLLKYL

Query:  KLQ
        ++Q
Subjt:  KLQ

AT1G75250.1 RAD-like 62.8e-2464.1Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+AKAVGGK+ +EVKRHY+IL+EDL  IE+GRVP+PNY+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR

AT1G75250.2 RAD-like 67.4e-2555Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR-----GAGNGDEELRLLKYLKL
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+AKAVGGK+ +EVKRHY+IL+EDL  IE+GRVP+PNY+          D + R +K LK+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR-----GAGNGDEELRLLKYLKL

AT2G18328.1 RAD-like 41.0e-2161.54Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR
        MASSS+      ++WTA+++K FE ALA +DK+TP+RWQ IA+AVGGKS +EVKRHYE+LL D+  IESGR P P YR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR

AT4G39250.1 RAD-like 13.9e-2655.45Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG---NG--DEELRLLKYLKL
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+AK VGGK+ +EVKRHYE+L++D+  IE+G VP PNYR +G   NG   +E + ++ ++L
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG---NG--DEELRLLKYLKL

Query:  Q
        Q
Subjt:  Q


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCAGCTCTTTGAAGCAGCAGCGGCCGGAGGCGACGTGGACGGCGAAGCAGAACAAGCTGTTCGAGAAGGCATTGGCTTTGTACGACAAAGAGACACCTGAGCG
ATGGCAGAATATCGCCAAGGCCGTCGGCGGGAAGTCGGCCGACGAAGTCAAAAGACACTATGAGATACTCTTGGAAGATCTCCGGCGGATCGAGTCCGGCCGTGTTCCTA
TTCCCAATTACAGAGGCGCCGGCAATGGAGATGAAGAGTTGAGGCTGCTCAAGTATCTTAAGCTCCAATGA
mRNA sequenceShow/hide mRNA sequence
GGGAAACCAGTCACACTCATCCTCCTCTCTCTTTCTCCTTTCGCCGACACTCAGATTCTTCCAACTTGCTTCAAATATATACACATATATATATATATAAATCTCTTTCA
TTTCTCCATTGATCACCACCAAAAACAAAAAACCAAAACCCCATCTCCAAAAATTTCTCCTTTTTTTCTTTCGCAATGGCTTCCAGCTCTTTGAAGCAGCAGCGGCCGGA
GGCGACGTGGACGGCGAAGCAGAACAAGCTGTTCGAGAAGGCATTGGCTTTGTACGACAAAGAGACACCTGAGCGATGGCAGAATATCGCCAAGGCCGTCGGCGGGAAGT
CGGCCGACGAAGTCAAAAGACACTATGAGATACTCTTGGAAGATCTCCGGCGGATCGAGTCCGGCCGTGTTCCTATTCCCAATTACAGAGGCGCCGGCAATGGAGATGAA
GAGTTGAGGCTGCTCAAGTATCTTAAGCTCCAATGAAGTTGCCTACCACTGCCATTGCCCTCTTTCAAGCTCTCATCAAATTGCAAAGTAAATTGTTGAACACAAATGGC
TCACTTGGCTAGGTGGATTTATACATATTTTACTGTACAAGTTTATCTTCTAAATCATTCCTGCAATAAAAGTGTACAATTAACGATCCTCGTTTGATTACCATTTTATT
GTTTTTATATTCTTTTTTAGTATAAATTTGTCGATCTACCCACGATTTGTTAATTTTGTAACCTACTTTATGAAAAATTAGAAGGAACTTTTGTTCCCAAAAAGTTTGTG
TTTGTTTGTTTAA
Protein sequenceShow/hide protein sequence
MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ