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Lcy05g014860 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g014860
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr05:18335172..18335522
RNA-Seq ExpressionLcy05g014860
SyntenyLcy05g014860
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7617742.1 Ribonuclease H domain [Arabidopsis thaliana x Arabidopsis arenosa]1.1e-0833.33Show/hide
Query:  MEELDSREGTYQTPHRLALSESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRALPSATPT-V
        +EE   R        +L +++S   RW PPP +  K N DATWN D++R G+GW++R+  G   + G R +PK   +   E  ++   + +L       V
Subjt:  MEELDSREGTYQTPHRLALSESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRALPSATPT-V

Query:  VVESDALQIIKLLNGDE
        + ESD+  +I++LN DE
Subjt:  VVESDALQIIKLLNGDE

XP_013632606.1 PREDICTED: uncharacterized protein LOC106338098 [Brassica oleracea var. oleracea]2.2e-0936.08Show/hide
Query:  ESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRALPS-ATPTVVVESDALQIIKLLNGDE
        E P  +W PP     K N DA+W+++   GG+GWI+R   G  L+AG R +P    +   E  +IS  ++ L      TV++E+D+L + ++LNG+E
Subjt:  ESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRALPS-ATPTVVVESDALQIIKLLNGDE

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]9.9e-1037.5Show/hide
Query:  LSESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRAL-PSATPTVVVESDALQIIKLLN
        + ++  A+W PP +  WK+N +A W  D   GG+GWI+R   G  + A  R I     I +LE ++I EGLRA+       + +ESD+L+ I LL+
Subjt:  LSESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRAL-PSATPTVVVESDALQIIKLLN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.1e-1135.14Show/hide
Query:  EGTYQTPHRLAL---SESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRALPS--ATPTVVVE
        E +YQ+   L++   + +   +W PPP   W +N DA+W++   RGG+GWI+RSW+G  + AG R +     +  LE  +I EGLR L +      + +E
Subjt:  EGTYQTPHRLAL---SESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRALPS--ATPTVVVE

Query:  SDALQIIKLLN
        +D+ ++  LLN
Subjt:  SDALQIIKLLN

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]9.9e-1036.54Show/hide
Query:  LSESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRAL---------PSATPTVVVESDALQII
        + ++  ARW PP +  WK+N DA W  D   GG+GWI+R   G  + A  R I     I +LE ++I EGLRA+               + +ESD+L+ I
Subjt:  LSESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRAL---------PSATPTVVVESDALQII

Query:  KLLN
         LL+
Subjt:  KLLN

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134124.8e-1037.5Show/hide
Query:  LSESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRAL-PSATPTVVVESDALQIIKLLN
        + ++  A+W PP +  WK+N +A W  D   GG+GWI+R   G  + A  R I     I +LE ++I EGLRA+       + +ESD+L+ I LL+
Subjt:  LSESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRAL-PSATPTVVVESDALQIIKLLN

A0A6J1CQG0 uncharacterized protein LOC1110132161.2e-0836.56Show/hide
Query:  RWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLR--ALPSATPTVVVESDALQIIKLLNGDE
        RW  PPT  WK+N DA+W+E+ + GG+GWI+    G  + AG   I +   I  LE ++I  GL+   + S +P + +ESD++++I+L+  ++
Subjt:  RWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLR--ALPSATPTVVVESDALQIIKLLNGDE

A0A6J1DNV9 uncharacterized protein LOC1110224031.5e-1135.14Show/hide
Query:  EGTYQTPHRLAL---SESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRALPS--ATPTVVVE
        E +YQ+   L++   + +   +W PPP   W +N DA+W++   RGG+GWI+RSW+G  + AG R +     +  LE  +I EGLR L +      + +E
Subjt:  EGTYQTPHRLAL---SESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRALPS--ATPTVVVE

Query:  SDALQIIKLLN
        +D+ ++  LLN
Subjt:  SDALQIIKLLN

A0A6J1DSV1 uncharacterized protein LOC1110236084.8e-1036.54Show/hide
Query:  LSESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRAL---------PSATPTVVVESDALQII
        + ++  ARW PP +  WK+N DA W  D   GG+GWI+R   G  + A  R I     I +LE ++I EGLRA+               + +ESD+L+ I
Subjt:  LSESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRAL---------PSATPTVVVESDALQII

Query:  KLLN
         LL+
Subjt:  KLLN

Q9SZD8 Putative reverse transcriptase/RNA-dependent DNA polymerase2.6e-0835.35Show/hide
Query:  LSESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRALPSATPT-VVVESDALQIIKLLNGDE
        ++ S   RW PPP +  K N DATWN D++R G+GW++R+  G   + G R +PK   +   E  ++   + +L       V+ ESD+  +I++LN DE
Subjt:  LSESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRALPSATPT-VVVESDALQIIKLLNGDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.1e-1028.45Show/hide
Query:  ELDSREGTYQTPHRLALS-ESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRALPSAT-PTVV
        EL+ +    Q    L++  ++PP +W+       K N DATW  ++ R G+GWI+R+ +G  L+ G R +P++  +   E  ++   +  +       ++
Subjt:  ELDSREGTYQTPHRLALS-ESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRALPSAT-PTVV

Query:  VESDALQIIKLLNGDE
         ESDA  ++ LLN D+
Subjt:  VESDALQIIKLLNGDE

AT4G29090.1 Ribonuclease H-like superfamily protein5.1e-1235.35Show/hide
Query:  LSESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRALPSATPT-VVVESDALQIIKLLNGDE
        ++ S   RW PPP +  K N DATWN D++R G+GW++R+  G   + G R +PK   +   E  ++   + +L       V+ ESD+  +I++LN DE
Subjt:  LSESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRALPSATPT-VVVESDALQIIKLLNGDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGTTAGATTCAAGAGAAGGAACTTACCAGACTCCCCATCGTCTGGCGCTGAGTGAATCTCCTCCGGCAAGGTGGATTCCACCTCCGACTAGAAAGTGGAAAAT
CAACTGCGACGCGACGTGGAATGAAGATCATCAGCGTGGTGGCCTTGGTTGGATCGTAAGAAGCTGGAACGGAACTCCGCTATTTGCTGGGTTTCGGTGCATTCCCAAAT
CGTTGAGGATAGCGTGGCTGGAAACTCTCTCGATTAGTGAGGGGCTCCGTGCTCTGCCGTCGGCAACACCTACCGTGGTGGTTGAAAGCGACGCCCTCCAGATAATCAAA
CTTCTCAACGGGGATGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAGTTAGATTCAAGAGAAGGAACTTACCAGACTCCCCATCGTCTGGCGCTGAGTGAATCTCCTCCGGCAAGGTGGATTCCACCTCCGACTAGAAAGTGGAAAAT
CAACTGCGACGCGACGTGGAATGAAGATCATCAGCGTGGTGGCCTTGGTTGGATCGTAAGAAGCTGGAACGGAACTCCGCTATTTGCTGGGTTTCGGTGCATTCCCAAAT
CGTTGAGGATAGCGTGGCTGGAAACTCTCTCGATTAGTGAGGGGCTCCGTGCTCTGCCGTCGGCAACACCTACCGTGGTGGTTGAAAGCGACGCCCTCCAGATAATCAAA
CTTCTCAACGGGGATGAGTAA
Protein sequenceShow/hide protein sequence
MEELDSREGTYQTPHRLALSESPPARWIPPPTRKWKINCDATWNEDHQRGGLGWIVRSWNGTPLFAGFRCIPKSLRIAWLETLSISEGLRALPSATPTVVVESDALQIIK
LLNGDE