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Lcy05g015050 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g015050
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr05:18590522..18591351
RNA-Seq ExpressionLcy05g015050
SyntenyLcy05g015050
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4376064.1 hypothetical protein F8388_022585 [Cannabis sativa]4.0e-0824.07Show/hide
Query:  MDVNPLCLLCRSKPETITHLMWECKQTR---------------GANGRRQIIANIHGKAERSMRIQPTPSNAKRRAREALGDCRALGQW--------KLN
        MDVNP C LC ++ ET+TH +W C   +                      I+  +  + ++S   +      + +A+      + L QW         +N
Subjt:  MDVNPLCLLCRSKPETITHLMWECKQTR---------------GANGRRQIIANIHGKAERSMRIQPTPSNAKRRAREALGDCRALGQW--------KLN

Query:  TDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHDSS-PVIVELDSIQVANLMEGKGDDLTELSLFIDEAKRVMETLQ
         D + N G    GIG++ R W G  + AG         +   ET A  E L+  PH ++ P+ ++ D   + + ++ +  +L+ +S  + + K  ME+  
Subjt:  TDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHDSS-PVIVELDSIQVANLMEGKGDDLTELSLFIDEAKRVMETLQ

Query:  IHAICHVSRRLNHLAH
         +   HV R  N  AH
Subjt:  IHAICHVSRRLNHLAH

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.4e-0843.68Show/hide
Query:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHDS-SPVIVELDSIQVANLMEGKGDDLT
        WKLNTDASW+E    GGIGW+L    G  + AG   +R +  I  LE +    GL+ I   S SP+ +E DS++V  LM+ +  DLT
Subjt:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHDS-SPVIVELDSIQVANLMEGKGDDLT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.2e-1538.33Show/hide
Query:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHD-SSPVIVELDSIQVANLMEGKGDDLTELSLFIDEAKRVM
        WKLNT+A+W   T TGGIGW+LR   G  I A  +++R    I +LE +A  EGLR+I  +   P+ +E DS++  +L+  +  D TE+   ++E  ++M
Subjt:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHD-SSPVIVELDSIQVANLMEGKGDDLTELSLFIDEAKRVM

Query:  ETLQIHAICHVSRRLNHLAH
        + ++I ++ H+SR  N +AH
Subjt:  ETLQIHAICHVSRRLNHLAH

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.9e-1337.19Show/hide
Query:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHDS--SPVIVELDSIQVANLMEGKGDDLTELSLFIDEAKRV
        W LN DASW++ T  GGIGW++RSW+G  + AG + V     +  LE  A  EGLR++ +     P+ +E DS +V +L+  K +DLT+    ++E   +
Subjt:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHDS--SPVIVELDSIQVANLMEGKGDDLTELSLFIDEAKRV

Query:  METLQIHAICHVSRRLNHLAH
         ++ +I A   V R  N  AH
Subjt:  METLQIHAICHVSRRLNHLAH

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.5e-1537.5Show/hide
Query:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHD---------SSPVIVELDSIQVANLMEGKGDDLTELSLF
        WKLNTDA+W   T TGGIGW+LR   G  I A  +++R    I +LE +A  EGLR+I  +           P+ +E DS++  +L+  +  D TE+   
Subjt:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHD---------SSPVIVELDSIQVANLMEGKGDDLTELSLF

Query:  IDEAKRVMETLQIHAICHVSRRLNHLAH
        ++E  ++ME ++I ++ H+SR  N +AH
Subjt:  IDEAKRVMETLQIHAICHVSRRLNHLAH

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134125.7e-1638.33Show/hide
Query:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHD-SSPVIVELDSIQVANLMEGKGDDLTELSLFIDEAKRVM
        WKLNT+A+W   T TGGIGW+LR   G  I A  +++R    I +LE +A  EGLR+I  +   P+ +E DS++  +L+  +  D TE+   ++E  ++M
Subjt:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHD-SSPVIVELDSIQVANLMEGKGDDLTELSLFIDEAKRVM

Query:  ETLQIHAICHVSRRLNHLAH
        + ++I ++ H+SR  N +AH
Subjt:  ETLQIHAICHVSRRLNHLAH

A0A6J1CQG0 uncharacterized protein LOC1110132161.1e-0843.68Show/hide
Query:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHDS-SPVIVELDSIQVANLMEGKGDDLT
        WKLNTDASW+E    GGIGW+L    G  + AG   +R +  I  LE +    GL+ I   S SP+ +E DS++V  LM+ +  DLT
Subjt:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHDS-SPVIVELDSIQVANLMEGKGDDLT

A0A6J1DNV9 uncharacterized protein LOC1110224039.1e-1437.19Show/hide
Query:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHDS--SPVIVELDSIQVANLMEGKGDDLTELSLFIDEAKRV
        W LN DASW++ T  GGIGW++RSW+G  + AG + V     +  LE  A  EGLR++ +     P+ +E DS +V +L+  K +DLT+    ++E   +
Subjt:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHDS--SPVIVELDSIQVANLMEGKGDDLTELSLFIDEAKRV

Query:  METLQIHAICHVSRRLNHLAH
         ++ +I A   V R  N  AH
Subjt:  METLQIHAICHVSRRLNHLAH

A0A6J1DSV1 uncharacterized protein LOC1110236087.4e-1637.5Show/hide
Query:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHD---------SSPVIVELDSIQVANLMEGKGDDLTELSLF
        WKLNTDA+W   T TGGIGW+LR   G  I A  +++R    I +LE +A  EGLR+I  +           P+ +E DS++  +L+  +  D TE+   
Subjt:  WKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHD---------SSPVIVELDSIQVANLMEGKGDDLTELSLF

Query:  IDEAKRVMETLQIHAICHVSRRLNHLAH
        ++E  ++ME ++I ++ H+SR  N +AH
Subjt:  IDEAKRVMETLQIHAICHVSRRLNHLAH

A0A7J6FZ95 Uncharacterized protein2.0e-0824.07Show/hide
Query:  MDVNPLCLLCRSKPETITHLMWECKQTR---------------GANGRRQIIANIHGKAERSMRIQPTPSNAKRRAREALGDCRALGQW--------KLN
        MDVNP C LC ++ ET+TH +W C   +                      I+  +  + ++S   +      + +A+      + L QW         +N
Subjt:  MDVNPLCLLCRSKPETITHLMWECKQTR---------------GANGRRQIIANIHGKAERSMRIQPTPSNAKRRAREALGDCRALGQW--------KLN

Query:  TDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHDSS-PVIVELDSIQVANLMEGKGDDLTELSLFIDEAKRVMETLQ
         D + N G    GIG++ R W G  + AG         +   ET A  E L+  PH ++ P+ ++ D   + + ++ +  +L+ +S  + + K  ME+  
Subjt:  TDASWNEGTMTGGIGWVLRSWNGTPISAGYQVVRRRWPIAWLETLAATEGLRSIPHDSS-PVIVELDSIQVANLMEGKGDDLTELSLFIDEAKRVMETLQ

Query:  IHAICHVSRRLNHLAH
         +   HV R  N  AH
Subjt:  IHAICHVSRRLNHLAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTCAACCCTTTATGTCTTCTGTGCAGATCAAAACCGGAAACCATCACTCATCTCATGTGGGAGTGTAAGCAGACCAGAGGGGCGAATGGACGGCGGCAGATTAT
TGCGAATATACATGGAAAGGCAGAAAGGAGCATGAGGATTCAACCCACGCCGTCGAATGCCAAGAGGAGAGCCCGTGAAGCACTTGGAGACTGCCGCGCGCTTGGACAAT
GGAAGCTTAATACTGATGCTTCCTGGAATGAAGGAACGATGACAGGAGGAATTGGTTGGGTGCTGAGAAGCTGGAATGGAACGCCTATTTCCGCCGGATATCAAGTTGTT
CGTCGAAGATGGCCGATCGCTTGGCTTGAGACCCTTGCGGCAACAGAAGGTTTGAGATCGATCCCTCATGATTCCTCTCCGGTGATTGTCGAGCTTGACTCTATTCAGGT
GGCAAATCTGATGGAGGGGAAGGGAGATGATCTTACCGAACTGTCCTTGTTCATTGATGAAGCTAAAAGGGTTATGGAGACTCTTCAAATCCACGCAATCTGCCATGTTT
CTAGGAGGCTAAATCATTTGGCCCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGTCAACCCTTTATGTCTTCTGTGCAGATCAAAACCGGAAACCATCACTCATCTCATGTGGGAGTGTAAGCAGACCAGAGGGGCGAATGGACGGCGGCAGATTAT
TGCGAATATACATGGAAAGGCAGAAAGGAGCATGAGGATTCAACCCACGCCGTCGAATGCCAAGAGGAGAGCCCGTGAAGCACTTGGAGACTGCCGCGCGCTTGGACAAT
GGAAGCTTAATACTGATGCTTCCTGGAATGAAGGAACGATGACAGGAGGAATTGGTTGGGTGCTGAGAAGCTGGAATGGAACGCCTATTTCCGCCGGATATCAAGTTGTT
CGTCGAAGATGGCCGATCGCTTGGCTTGAGACCCTTGCGGCAACAGAAGGTTTGAGATCGATCCCTCATGATTCCTCTCCGGTGATTGTCGAGCTTGACTCTATTCAGGT
GGCAAATCTGATGGAGGGGAAGGGAGATGATCTTACCGAACTGTCCTTGTTCATTGATGAAGCTAAAAGGGTTATGGAGACTCTTCAAATCCACGCAATCTGCCATGTTT
CTAGGAGGCTAAATCATTTGGCCCATTAG
Protein sequenceShow/hide protein sequence
MDVNPLCLLCRSKPETITHLMWECKQTRGANGRRQIIANIHGKAERSMRIQPTPSNAKRRAREALGDCRALGQWKLNTDASWNEGTMTGGIGWVLRSWNGTPISAGYQVV
RRRWPIAWLETLAATEGLRSIPHDSSPVIVELDSIQVANLMEGKGDDLTELSLFIDEAKRVMETLQIHAICHVSRRLNHLAH