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Lcy05g015190 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g015190
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
Genome locationChr05:18873535..18874275
RNA-Seq ExpressionLcy05g015190
SyntenyLcy05g015190
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]5.3e-2434.84Show/hide
Query:  MMGPGCSGFGWNEEFKCIEAEKETFDLW---------------------------VKGGVSEVMAEMRSNVPD--DAVNLSGSSDNDILIPPFTMPNVNM
        M GP CSGFGWN+E KCI AEKE FD W                             GG +E  A++ SN P   DAV      D D   PP   P +NM
Subjt:  MMGPGCSGFGWNEEFKCIEAEKETFDLW---------------------------VKGGVSEVMAEMRSNVPD--DAVNLSGSSDNDILIPPFTMPNVNM

Query:  SEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATE
        S D+   T  ++     N S GSKRKR G      ++V   +    EQL  I +WP  +R   T+   +IV HL  +P+L    R +LM IL  N+   +
Subjt:  SEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATE

Query:  SFFSIPAPLKLEYCEYLLDKH
        +F  +P  +K  YC  +L ++
Subjt:  SFFSIPAPLKLEYCEYLLDKH

KAA0048362.1 retrotransposon protein [Cucumis melo var. makuwa]5.3e-2434.84Show/hide
Query:  MMGPGCSGFGWNEEFKCIEAEKETFDLW---------------------------VKGGVSEVMAEMRSNVPD--DAVNLSGSSDNDILIPPFTMPNVNM
        M GP CSGFGWN+E KCI AEKE FD W                             GG +E  A++ SN P   DAV      D D   PP   P +NM
Subjt:  MMGPGCSGFGWNEEFKCIEAEKETFDLW---------------------------VKGGVSEVMAEMRSNVPD--DAVNLSGSSDNDILIPPFTMPNVNM

Query:  SEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATE
        S D+   T  ++     N S GSKRKR G      ++V   +    EQL  I +WP  +R   T+   +IV HL  +P+L    R +LM IL  N+   +
Subjt:  SEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATE

Query:  SFFSIPAPLKLEYCEYLLDKH
        +F  +P  +K  YC  +L ++
Subjt:  SFFSIPAPLKLEYCEYLLDKH

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-2436.16Show/hide
Query:  MMGPGCSGFGWNEEFKCIEAEKETFDLWVK-----------------------------GGVSEVMAEMRSNVP---DDAVNLSGSSDNDILIPPFTMPN
        M GP CSGFGWNEEF+CI AE++ FD WVK                             G  SE   ++ SNVP   +D + L  S D D  IP      
Subjt:  MMGPGCSGFGWNEEFKCIEAEKETFDLWVK-----------------------------GGVSEVMAEMRSNVP---DDAVNLSGSSDNDILIPPFTMPN

Query:  VNMSEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMK
        V++S DE         + I                  AEV+   M    EQLK+I DW  +KRA E E   ++V  L ++P+L ++ R KLM ILF +++
Subjt:  VNMSEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMK

Query:  ATESFFSIPAPLKLEYCEYLLDKH
        A   F SIP  LKLEYC  LL  +
Subjt:  ATESFFSIPAPLKLEYCEYLLDKH

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]6.4e-3039.82Show/hide
Query:  MMGPGCSGFGWNEEFKCIEAEKETFDLWVK-----------------------------GGVSEVMAEMRSNVP---DDAVNLSGSSDNDILIPPFTMPN
        M GP CSGFGWNEEF+CI AE++ FD W+K                             G  SE    + SNV    +D + L  S D D  IP      
Subjt:  MMGPGCSGFGWNEEFKCIEAEKETFDLWVK-----------------------------GGVSEVMAEMRSNVP---DDAVNLSGSSDNDILIPPFTMPN

Query:  VNMSEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMK
        V+MS DE       Q     N S  SKRKR        EV+   M    EQLK+I DWP +KRA E E   ++V  L ++P L ++ R KLM ILF +++
Subjt:  VNMSEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMK

Query:  ATESFFSIPAPLKLEYCEYLL
        A E F SIP  LKLEYC  LL
Subjt:  ATESFFSIPAPLKLEYCEYLL

XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]9.9e-3139.37Show/hide
Query:  MMGPGCSGFGWNEEFKCIEAEKETFDLWVK-----------------------------GGVSEVMAEMRSNVPDDAVNLSGSSDNDILIPPFTMPNVNM
        M G  CSGFGWNEEF+CI AEKETFD WVK                             G  +E+  +M S+VP       G+S +D           ++
Subjt:  MMGPGCSGFGWNEEFKCIEAEKETFDLWVK-----------------------------GGVSEVMAEMRSNVPDDAVNLSGSSDNDILIPPFTMPNVNM

Query:  SEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATE
        S+DE   TP    +   NS RGSKRK  G +  + +V    M    +QLKSI +W  K+ ATE E   K+V+ L ++P L  ++++K M+I+F N+  TE
Subjt:  SEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATE

Query:  SFFSIPAPLKLEYCEYLLDKH
        SF SIPA +KLEYCE LL  H
Subjt:  SFFSIPAPLKLEYCEYLLDKH

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859533.1e-3039.82Show/hide
Query:  MMGPGCSGFGWNEEFKCIEAEKETFDLWVK-----------------------------GGVSEVMAEMRSNVP---DDAVNLSGSSDNDILIPPFTMPN
        M GP CSGFGWNEEF+CI AE++ FD W+K                             G  SE    + SNV    +D + L  S D D  IP      
Subjt:  MMGPGCSGFGWNEEFKCIEAEKETFDLWVK-----------------------------GGVSEVMAEMRSNVP---DDAVNLSGSSDNDILIPPFTMPN

Query:  VNMSEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMK
        V+MS DE       Q     N S  SKRKR        EV+   M    EQLK+I DWP +KRA E E   ++V  L ++P L ++ R KLM ILF +++
Subjt:  VNMSEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMK

Query:  ATESFFSIPAPLKLEYCEYLL
        A E F SIP  LKLEYC  LL
Subjt:  ATESFFSIPAPLKLEYCEYLL

A0A5A7TI07 Retrotransposon protein5.9e-2131.96Show/hide
Query:  MMGPGCSGFGWNEEFKCIEAEKETFDLW---------------------------VKGGVSEVMAEMRSNVPDDAVNLSGSSDNDILIPPFTMPNVNMSE
        M GP CSGFGWN+E KCI AEKE FD W                             GG +E  A++ SN P      +  +  D    P   P +NMS 
Subjt:  MMGPGCSGFGWNEEFKCIEAEKETFDLW---------------------------VKGGVSEVMAEMRSNVPDDAVNLSGSSDNDILIPPFTMPNVNMSE

Query:  DEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESF
        D+      ++     N SRGSKRKR+G      ++V   +    EQL  I +W   +R   T+   +IV  L  +P+L    R +LM IL  N+   ++F
Subjt:  DEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESF

Query:  FSIPAPLKLEYCEYLLDKH
          +P  +K  YC  +L ++
Subjt:  FSIPAPLKLEYCEYLLDKH

A0A5A7U0H7 Retrotransposon protein3.1e-3039.82Show/hide
Query:  MMGPGCSGFGWNEEFKCIEAEKETFDLWVK-----------------------------GGVSEVMAEMRSNVP---DDAVNLSGSSDNDILIPPFTMPN
        M GP CSGFGWNEEF+CI AE++ FD W+K                             G  SE    + SNV    +D + L  S D D  IP      
Subjt:  MMGPGCSGFGWNEEFKCIEAEKETFDLWVK-----------------------------GGVSEVMAEMRSNVP---DDAVNLSGSSDNDILIPPFTMPN

Query:  VNMSEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMK
        V+MS DE       Q     N S  SKRKR        EV+   M    EQLK+I DWP +KRA E E   ++V  L ++P L ++ R KLM ILF +++
Subjt:  VNMSEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMK

Query:  ATESFFSIPAPLKLEYCEYLL
        A E F SIP  LKLEYC  LL
Subjt:  ATESFFSIPAPLKLEYCEYLL

A0A5D3BZU3 Retrotransposon protein7.7e-2141.82Show/hide
Query:  GGVSEVMAEMRSNVP---DDAVNLSGSSDNDILIPPFTMPNVNMSEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWP
        G  SE  A+  SNV    +D V L  S + DIL        V+MS DE       Q     N S GSKRKR   +  + EV++       +QLK+ITDWP
Subjt:  GGVSEVMAEMRSNVP---DDAVNLSGSSDNDILIPPFTMPNVNMSEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWP

Query:  DKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLLDKH
         +KRATE E   ++V  L ++P L ++ R KLM ILF +++A E F SIP  LKLEYC  LL+ +
Subjt:  DKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLLDKH

A0A5D3DG22 Retrotransposon protein1.1e-2436.16Show/hide
Query:  MMGPGCSGFGWNEEFKCIEAEKETFDLWVK-----------------------------GGVSEVMAEMRSNVP---DDAVNLSGSSDNDILIPPFTMPN
        M GP CSGFGWNEEF+CI AE++ FD WVK                             G  SE   ++ SNVP   +D + L  S D D  IP      
Subjt:  MMGPGCSGFGWNEEFKCIEAEKETFDLWVK-----------------------------GGVSEVMAEMRSNVP---DDAVNLSGSSDNDILIPPFTMPN

Query:  VNMSEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMK
        V++S DE         + I                  AEV+   M    EQLK+I DW  +KRA E E   ++V  L ++P+L ++ R KLM ILF +++
Subjt:  VNMSEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVNRGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMK

Query:  ATESFFSIPAPLKLEYCEYLLDKH
        A   F SIP  LKLEYC  LL  +
Subjt:  ATESFFSIPAPLKLEYCEYLLDKH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGGCCCTGGATGTAGTGGCTTTGGCTGGAACGAGGAATTTAAGTGCATCGAGGCGGAGAAAGAAACATTCGACCTGTGGGTGAAGGGGGGGGTGTCAGAGGTGAT
GGCAGAGATGAGGTCTAACGTACCAGATGATGCAGTAAACCTTAGTGGATCCTCGGACAACGACATCCTCATCCCGCCGTTCACCATGCCTAATGTGAACATGTCAGAGG
ATGAGCCTCAGGTGACGCCGAACAGTCAAACTTACGCAATTGGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGTTGTGAAT
CGAGGAATGGTCACGTTCACAGAACAACTTAAGTCCATTACTGACTGGCCAGACAAAAAACGTGCCACAGAGACAGAGTTTTGGGATAAAATTGTCTCCCACTTGATGGA
GGTACCCGACCTGGACAACCGAAAAAGGGTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCTGCTCCTCTGAAGTTGGAGT
ATTGTGAATACCTCTTGGACAAACACAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGGCCCTGGATGTAGTGGCTTTGGCTGGAACGAGGAATTTAAGTGCATCGAGGCGGAGAAAGAAACATTCGACCTGTGGGTGAAGGGGGGGGTGTCAGAGGTGAT
GGCAGAGATGAGGTCTAACGTACCAGATGATGCAGTAAACCTTAGTGGATCCTCGGACAACGACATCCTCATCCCGCCGTTCACCATGCCTAATGTGAACATGTCAGAGG
ATGAGCCTCAGGTGACGCCGAACAGTCAAACTTACGCAATTGGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGTTGTGAAT
CGAGGAATGGTCACGTTCACAGAACAACTTAAGTCCATTACTGACTGGCCAGACAAAAAACGTGCCACAGAGACAGAGTTTTGGGATAAAATTGTCTCCCACTTGATGGA
GGTACCCGACCTGGACAACCGAAAAAGGGTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCTGCTCCTCTGAAGTTGGAGT
ATTGTGAATACCTCTTGGACAAACACAGTTGA
Protein sequenceShow/hide protein sequence
MMGPGCSGFGWNEEFKCIEAEKETFDLWVKGGVSEVMAEMRSNVPDDAVNLSGSSDNDILIPPFTMPNVNMSEDEPQVTPNSQTYAIGNSSRGSKRKRSGPNMHIAEVVN
RGMVTFTEQLKSITDWPDKKRATETEFWDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLLDKHS