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Lcy05g015200 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g015200
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
Genome locationChr05:18874294..18874524
RNA-Seq ExpressionLcy05g015200
SyntenyLcy05g015200
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045008.1 retrotransposon protein [Cucumis melo var. makuwa]3.9e-1553.95Show/hide
Query:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK
        M++S+RAP H WT  E+  LVE L+ L+ +G W+SDNGTFR GY AQL  +M EKLPG  V A + I+ R++TLK+
Subjt:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK

KAA0056560.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-1555.26Show/hide
Query:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK
        M++S+RAP H WT  E+  LVE L+ L+ +G W+SDNGTFRSGY AQL  +M EKLPG  V A + I+ R++TLK+
Subjt:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK

KAA0066605.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-1659.21Show/hide
Query:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK
        M SSSRAP HTWT  E+AKLVE LV L+  G WRS+NGTFR GY AQL+ +M EKLP  ++     I+ RV++LKK
Subjt:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.8e-1556.58Show/hide
Query:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK
        M S SRAP HTWT  E+ K VE LV L+  G WRSDNGTF+ GY AQL+ +M EKLPG ++   S I+  V++LKK
Subjt:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK

XP_031742657.1 uncharacterized protein LOC116404426 [Cucumis sativus]3.0e-1557.89Show/hide
Query:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK
        MTSSSRAP H WT  E+A LVE +V L+  G W+SDNGTFR GY AQL  +M  KLPG +V A + I+ R++TLK+
Subjt:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859538.6e-1656.58Show/hide
Query:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK
        M S SRAP HTWT  E+ K VE LV L+  G WRSDNGTF+ GY AQL+ +M EKLPG ++   S I+  V++LKK
Subjt:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK

A0A5A7TQ37 Retrotransposon protein1.9e-1553.95Show/hide
Query:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK
        M++S+RAP H WT  E+  LVE L+ L+ +G W+SDNGTFR GY AQL  +M EKLPG  V A + I+ R++TLK+
Subjt:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK

A0A5A7U0H7 Retrotransposon protein8.6e-1656.58Show/hide
Query:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK
        M S SRAP HTWT  E+ K VE LV L+  G WRSDNGTF+ GY AQL+ +M EKLPG ++   S I+  V++LKK
Subjt:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK

A0A5A7UNC0 Retrotransposon protein6.5e-1655.26Show/hide
Query:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK
        M++S+RAP H WT  E+  LVE L+ L+ +G W+SDNGTFRSGY AQL  +M EKLPG  V A + I+ R++TLK+
Subjt:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK

A0A5D3CQS4 Retrotransposon protein7.7e-1759.21Show/hide
Query:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK
        M SSSRAP HTWT  E+AKLVE LV L+  G WRS+NGTFR GY AQL+ +M EKLP  ++     I+ RV++LKK
Subjt:  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCAGTTCCTCTAGAGCTCCAACACACACGTGGACGAATAACGAGGACGCGAAGCTTGTGGAGTCCCTCGTGTCGTTACTTCATGTGGGCGATTGGAGGTCCGATAA
TGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTGCCGGGACGGGACGTTCCAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCC
TGAAGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACCAGTTCCTCTAGAGCTCCAACACACACGTGGACGAATAACGAGGACGCGAAGCTTGTGGAGTCCCTCGTGTCGTTACTTCATGTGGGCGATTGGAGGTCCGATAA
TGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTGCCGGGACGGGACGTTCCAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCC
TGAAGAAATAA
Protein sequenceShow/hide protein sequence
MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK