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Lcy05g015420 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g015420
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr05:19385452..19387726
RNA-Seq ExpressionLcy05g015420
SyntenyLcy05g015420
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021753633.1 uncharacterized protein LOC110719026 [Chenopodium quinoa]3.9e-0532.11Show/hide
Query:  GLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYRDKCRSNLPIIVEADASEAIRALNHECIDLSECKLVLCDIELQASSCGAIAFVKCPRD
        GLG +  D  G  +  G +QI   W +   E  AI+ G+         +L  +VE+D  + I+AL ++  DLSE  L++ DI L  SS   + +    R 
Subjt:  GLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYRDKCRSNLPIIVEADASEAIRALNHECIDLSECKLVLCDIELQASSCGAIAFVKCPRD

Query:  GNRIVHHLA
        GN++ H  A
Subjt:  GNRIVHHLA

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.0e-0831.03Show/hide
Query:  WRPRGSLRWQEGWPLEVTKSQKVECQESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYR-DKCRSNLPIIVEADASEAIRALNHE
        W+P  S      W L    + +    ++  GG+GWI  D  G  ++   + I    +I +LE+MAI EG+ A R + CR   PI +E+D+ EAI  L+ +
Subjt:  WRPRGSLRWQEGWPLEVTKSQKVECQESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYR-DKCRSNLPIIVEADASEAIRALNHE

Query:  CIDLSECKLVLCDIELQASSCGAIAFVKCPRDGNRIVHHLARVAV
        C D +E   +L +I         ++     R+ N++ H LAR A+
Subjt:  CIDLSECKLVLCDIELQASSCGAIAFVKCPRDGNRIVHHLARVAV

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.1e-0730Show/hide
Query:  WRPRGSLRWQEGWPLEVTKSQKVECQESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYR-DKCR-----SNLPIIVEADASEAIR
        W+P  S      W L    + +    ++  GG+GWI  D  G  ++   + I    +I +LE+MAI EG+ A R + CR        PI +E+D+ EAI 
Subjt:  WRPRGSLRWQEGWPLEVTKSQKVECQESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYR-DKCR-----SNLPIIVEADASEAIR

Query:  ALNHECIDLSECKLVLCDIELQASSCGAIAFVKCPRDGNRIVHHLARVAV
         L+ +C D +E   +L +I         ++     R+ N++ H LAR A+
Subjt:  ALNHECIDLSECKLVLCDIELQASSCGAIAFVKCPRDGNRIVHHLARVAV

XP_030934661.1 uncharacterized protein LOC115960098 [Quercus lobata]8.7e-0530Show/hide
Query:  ESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYRDKCRSNLPIIVEADASEAIRALNHECIDLSECKLVLCDIELQASSCGAIAFV
        +S+  GLG I  +  G  +    + I  P S+  +E++A +  +   +D   +   ++VE D+   I+AL+   +  S    +L DI+  +SS G + F 
Subjt:  ESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYRDKCRSNLPIIVEADASEAIRALNHECIDLSECKLVLCDIELQASSCGAIAFV

Query:  KCPRDGNRIVHHLARVAVGF
           R GNR+ H LAR+A  F
Subjt:  KCPRDGNRIVHHLARVAVGF

XP_030940160.1 uncharacterized protein LOC115965104 [Quercus lobata]6.7e-0531.67Show/hide
Query:  ESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYRDKCRSNLPIIVEADASEAIRALNHECIDLSECKLVLCDIELQASSCGAIAFV
        ES+  GLG I  +  G  +    + I  P S+  +E++A +  +   +D   +   +IVE D+   I+AL+   +  S    +L DI+  +SS G++ F 
Subjt:  ESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYRDKCRSNLPIIVEADASEAIRALNHECIDLSECKLVLCDIELQASSCGAIAFV

Query:  KCPRDGNRIVHHLARVAVGF
           R GNR+ H LAR+A  F
Subjt:  KCPRDGNRIVHHLARVAVGF

TrEMBL top hitse value%identityAlignment
A0A2N9EVK9 Reverse transcriptase domain-containing protein2.7e-0427.97Show/hide
Query:  WRPRGSLRWQEGWPLEVTKSQKVECQESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYRDKCRSNLPIIVEADASEAIRALNHEC
        W+P  +LR++  +   V K       E+   G+G I  DS G  +    +++  P S+  +E  A+K  I    +   +      E D+   + ALN   
Subjt:  WRPRGSLRWQEGWPLEVTKSQKVECQESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYRDKCRSNLPIIVEADASEAIRALNHEC

Query:  IDLSECKLVLCDIELQASSCGAIAFVKCPRDGNRIVHHLARVA
          L+   L++ D ++ AS   + +F    RDGNR+ H LAR A
Subjt:  IDLSECKLVLCDIELQASSCGAIAFVKCPRDGNRIVHHLARVA

A0A2N9HEC7 Reverse transcriptase domain-containing protein4.7e-0428.99Show/hide
Query:  QESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYRDKCRSNLPIIVEADASEAIRALNHECIDLSECKLVLCDIELQASSCGAIAF
        +E+   G+G I  DSSG  +    +++  P S+  +E  A+K  I    +   ++     E D+   + ALN     L+   L++ D ++ AS   + +F
Subjt:  QESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYRDKCRSNLPIIVEADASEAIRALNHECIDLSECKLVLCDIELQASSCGAIAF

Query:  VKCPRDGNRIVHHLARVAVGF-TLVSSLSSVVVDENFF
            R GN++ H LAR A+   +L   + SV  D NFF
Subjt:  VKCPRDGNRIVHHLARVAVGF-TLVSSLSSVVVDENFF

A0A6D2I187 RNase H domain-containing protein1.2e-0430.25Show/hide
Query:  CQESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYRDKCRSNLPIIVEADASEAIRALNHECIDLSECKLVLCDIELQASSCGAIA
        C+++  GG+GWI LD +GS +  G+    +  S    E +AI+  +    +   ++L I   +DA + IR ++ +   L E   +L DI   AS   +I+
Subjt:  CQESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYRDKCRSNLPIIVEADASEAIRALNHECIDLSECKLVLCDIELQASSCGAIA

Query:  FVKCPRDGNRIVHHLARVA
        F   PR  N+I   +A+ A
Subjt:  FVKCPRDGNRIVHHLARVA

A0A6J1CP26 uncharacterized protein LOC1110134124.8e-0931.03Show/hide
Query:  WRPRGSLRWQEGWPLEVTKSQKVECQESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYR-DKCRSNLPIIVEADASEAIRALNHE
        W+P  S      W L    + +    ++  GG+GWI  D  G  ++   + I    +I +LE+MAI EG+ A R + CR   PI +E+D+ EAI  L+ +
Subjt:  WRPRGSLRWQEGWPLEVTKSQKVECQESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYR-DKCRSNLPIIVEADASEAIRALNHE

Query:  CIDLSECKLVLCDIELQASSCGAIAFVKCPRDGNRIVHHLARVAV
        C D +E   +L +I         ++     R+ N++ H LAR A+
Subjt:  CIDLSECKLVLCDIELQASSCGAIAFVKCPRDGNRIVHHLARVAV

A0A6J1DSV1 uncharacterized protein LOC1110236085.3e-0830Show/hide
Query:  WRPRGSLRWQEGWPLEVTKSQKVECQESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYR-DKCR-----SNLPIIVEADASEAIR
        W+P  S      W L    + +    ++  GG+GWI  D  G  ++   + I    +I +LE+MAI EG+ A R + CR        PI +E+D+ EAI 
Subjt:  WRPRGSLRWQEGWPLEVTKSQKVECQESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYR-DKCR-----SNLPIIVEADASEAIR

Query:  ALNHECIDLSECKLVLCDIELQASSCGAIAFVKCPRDGNRIVHHLARVAV
         L+ +C D +E   +L +I         ++     R+ N++ H LAR A+
Subjt:  ALNHECIDLSECKLVLCDIELQASSCGAIAFVKCPRDGNRIVHHLARVAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGGAGAATGACTTGGCGACCACGTGGAAGTCTGAGGTGGCAGGAAGGATGGCCTTTGGAAGTAACGAAGAGCCAGAAAGTAGAATGTCAGGAAAGCACGAGGGG
CGGGTTAGGCTGGATCGCTCTTGATTCTTCAGGATCTCCATTAAGATTTGGCTACAAACAAATCAACAAACCTTGGTCGATCAATTTCCTCGAATTGATGGCGATTAAAG
AAGGGATTACTGCTTACAGGGACAAATGCCGGAGTAATCTCCCAATTATTGTTGAGGCGGACGCATCTGAGGCCATTAGAGCTCTGAATCACGAATGCATCGACCTGTCT
GAATGTAAATTGGTGCTGTGCGACATCGAGCTTCAAGCCTCCTCCTGCGGCGCCATCGCTTTCGTCAAATGCCCGAGGGATGGGAACAGGATAGTGCACCACCTTGCGCG
AGTGGCGGTGGGTTTTACGCTGGTGAGCAGCCTGTCGTCCGTTGTTGTCGACGAGAATTTTTTTTGGGTCTCTTCCACGCTGGAAGACGACGGTTTTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGGAGAATGACTTGGCGACCACGTGGAAGTCTGAGGTGGCAGGAAGGATGGCCTTTGGAAGTAACGAAGAGCCAGAAAGTAGAATGTCAGGAAAGCACGAGGGG
CGGGTTAGGCTGGATCGCTCTTGATTCTTCAGGATCTCCATTAAGATTTGGCTACAAACAAATCAACAAACCTTGGTCGATCAATTTCCTCGAATTGATGGCGATTAAAG
AAGGGATTACTGCTTACAGGGACAAATGCCGGAGTAATCTCCCAATTATTGTTGAGGCGGACGCATCTGAGGCCATTAGAGCTCTGAATCACGAATGCATCGACCTGTCT
GAATGTAAATTGGTGCTGTGCGACATCGAGCTTCAAGCCTCCTCCTGCGGCGCCATCGCTTTCGTCAAATGCCCGAGGGATGGGAACAGGATAGTGCACCACCTTGCGCG
AGTGGCGGTGGGTTTTACGCTGGTGAGCAGCCTGTCGTCCGTTGTTGTCGACGAGAATTTTTTTTGGGTCTCTTCCACGCTGGAAGACGACGGTTTTGGTTGA
Protein sequenceShow/hide protein sequence
MGRRMTWRPRGSLRWQEGWPLEVTKSQKVECQESTRGGLGWIALDSSGSPLRFGYKQINKPWSINFLELMAIKEGITAYRDKCRSNLPIIVEADASEAIRALNHECIDLS
ECKLVLCDIELQASSCGAIAFVKCPRDGNRIVHHLARVAVGFTLVSSLSSVVVDENFFWVSSTLEDDGFG