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Lcy05g015450 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g015450
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr05:19446257..19446817
RNA-Seq ExpressionLcy05g015450
SyntenyLcy05g015450
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4279811.1 unnamed protein product [Prunus armeniaca]9.3e-1033.06Show/hide
Query:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL
        +N DA+W    ++GGV W++RD+ G +V AGCK      S   +E  AI+E L+A + S   G   + VE+D++++I++L  E +     +  V +I+ L
Subjt:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL

Query:  AAKVGVASFVKCPRQGNRVAH
          +     F+  PR  N+ AH
Subjt:  AAKVGVASFVKCPRQGNRVAH

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.3e-1133.86Show/hide
Query:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL
        +N++A+W  D   GG+ WI+RD  G ++ A C+ I    ++  LE+ AI EGL A    + R    + +E+D++E I LL+ +C D +E    +  I  +
Subjt:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL

Query:  AAKVGVASFVKCPRQGNRVAHFLARAA
           + + S     R+ N+VAH LAR A
Subjt:  AAKVGVASFVKCPRQGNRVAHFLARAA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]6.5e-1139.06Show/hide
Query:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL
        +N+DASW+D    GG+ WIIR   G +VLAG + +    +VKLLE +AI EGL   L++    RP + +E D+ EV  LLN + +D+++    V  I +L
Subjt:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL

Query:  AAKVGVASFVKCPRQGNRVAHFLARAAA
             + +F K  R+ N  AH LA+ A+
Subjt:  AAKVGVASFVKCPRQGNRVAHFLARAAA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.7e-1134.59Show/hide
Query:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRG------RPTVIVEADAMEVIKLLNSECDDISEAKAFV
        +N+DA+W  D   GG+ WI+RD  G ++ A C+ I    ++  LE+ AI EGL A    + R       RP + +E+D++E I LL+ +C D +E    +
Subjt:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRG------RPTVIVEADAMEVIKLLNSECDDISEAKAFV

Query:  LNIEDLAAKVGVASFVKCPRQGNRVAHFLARAA
          I  +   + + S     R+ N+VAH LAR A
Subjt:  LNIEDLAAKVGVASFVKCPRQGNRVAHFLARAA

XP_030967655.1 uncharacterized protein LOC115988151 [Quercus lobata]9.3e-1037.5Show/hide
Query:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL
        +N D +  DD     +  +IRD LGSL+ A  K +   +S +  E  A++EG+   L +++ G   V+VE+DA+ VI+ ++S CD  SE    + NI+D+
Subjt:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL

Query:  AAKVGVASFVKCPRQGNRVAHFLARAAA
        ++     SF    R GNR AH LARAA+
Subjt:  AAKVGVASFVKCPRQGNRVAHFLARAAA

TrEMBL top hitse value%identityAlignment
A0A2P5D390 Ribonuclease H-like domain containing protein5.0e-0936.92Show/hide
Query:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL
        +NSD    D     G   IIRD+ G ++L+   +I  N+SV L E+ A++EGL   L    +G    I+E DA EVI L  S CD  S   + + +I  +
Subjt:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL

Query:  AAKVGVASFVKCPRQGNRVAHFLARAAAGF
         +   ++S     R GN VAHFLA +A  F
Subjt:  AAKVGVASFVKCPRQGNRVAHFLARAAAGF

A0A6J1CP26 uncharacterized protein LOC1110134126.3e-1233.86Show/hide
Query:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL
        +N++A+W  D   GG+ WI+RD  G ++ A C+ I    ++  LE+ AI EGL A    + R    + +E+D++E I LL+ +C D +E    +  I  +
Subjt:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL

Query:  AAKVGVASFVKCPRQGNRVAHFLARAA
           + + S     R+ N+VAH LAR A
Subjt:  AAKVGVASFVKCPRQGNRVAHFLARAA

A0A6J1DNV9 uncharacterized protein LOC1110224033.1e-1139.06Show/hide
Query:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL
        +N+DASW+D    GG+ WIIR   G +VLAG + +    +VKLLE +AI EGL   L++    RP + +E D+ EV  LLN + +D+++    V  I +L
Subjt:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL

Query:  AAKVGVASFVKCPRQGNRVAHFLARAAA
             + +F K  R+ N  AH LA+ A+
Subjt:  AAKVGVASFVKCPRQGNRVAHFLARAAA

A0A6J1DSV1 uncharacterized protein LOC1110236088.2e-1234.59Show/hide
Query:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRG------RPTVIVEADAMEVIKLLNSECDDISEAKAFV
        +N+DA+W  D   GG+ WI+RD  G ++ A C+ I    ++  LE+ AI EGL A    + R       RP + +E+D++E I LL+ +C D +E    +
Subjt:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRG------RPTVIVEADAMEVIKLLNSECDDISEAKAFV

Query:  LNIEDLAAKVGVASFVKCPRQGNRVAHFLARAA
          I  +   + + S     R+ N+VAH LAR A
Subjt:  LNIEDLAAKVGVASFVKCPRQGNRVAHFLARAA

A0A6J5UV01 Reverse transcriptase domain-containing protein4.5e-1033.06Show/hide
Query:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL
        +N DA+W    ++GGV W++RD+ G +V AGCK      S   +E  AI+E L+A + S   G   + VE+D++++I++L  E +     +  V +I+ L
Subjt:  MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDL

Query:  AAKVGVASFVKCPRQGNRVAH
          +     F+  PR  N+ AH
Subjt:  AAKVGVASFVKCPRQGNRVAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein1.4e-0829.79Show/hide
Query:  NSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDI-SEAKAFVLNIEDL
        N+DA+WN D E  G+ W++R+  G +   G + +    SV   E+ A++    A LS +      VI E+D+  +I++LN+  D+I    K  + +++ L
Subjt:  NSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDI-SEAKAFVLNIEDL

Query:  AAKVGVASFVKCPRQGNRVAHFLARAAAGFPPVPPPSSGVV
         ++     FV  PR+GN +A  +AR +  F    P    +V
Subjt:  AAKVGVASFVKCPRQGNRVAHFLARAAAGFPPVPPPSSGVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCGGATGCCTCTTGGAACGATGACGTTGAGGTTGGGGGCGTCAGCTGGATCATCCGTGATACATTAGGATCTTTGGTCCTCGCTGGGTGTAAAAGAATTTCTTG
TAATTGGAGTGTGAAATTATTGGAGATGGCGGCGATTAAAGAAGGGCTGATGGCGTACCTTTCCTCTAATTCTCGTGGGCGTCCGACAGTGATCGTCGAAGCGGATGCCA
TGGAGGTGATCAAATTGCTGAATTCTGAGTGCGATGACATTTCTGAAGCCAAGGCGTTTGTGCTTAACATTGAAGATTTGGCGGCTAAAGTGGGAGTTGCTTCCTTCGTG
AAATGCCCAAGACAAGGTAATCGTGTGGCGCATTTTTTGGCACGAGCAGCGGCAGGCTTTCCTCCGGTGCCCCCTCCGTCATCCGGTGTCGTCGATGGAATTTCTGTTTC
TGATTTGCTTTCCCCTTCCATGTTGGAAGGAACTATTTTTTGTAGGGATACTTCTATCCCCTCTTGGCTATCCTCTTTAATGGTAGAGGATGTTAGTTGTACCGAACTTT
TGAGCTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTCGGATGCCTCTTGGAACGATGACGTTGAGGTTGGGGGCGTCAGCTGGATCATCCGTGATACATTAGGATCTTTGGTCCTCGCTGGGTGTAAAAGAATTTCTTG
TAATTGGAGTGTGAAATTATTGGAGATGGCGGCGATTAAAGAAGGGCTGATGGCGTACCTTTCCTCTAATTCTCGTGGGCGTCCGACAGTGATCGTCGAAGCGGATGCCA
TGGAGGTGATCAAATTGCTGAATTCTGAGTGCGATGACATTTCTGAAGCCAAGGCGTTTGTGCTTAACATTGAAGATTTGGCGGCTAAAGTGGGAGTTGCTTCCTTCGTG
AAATGCCCAAGACAAGGTAATCGTGTGGCGCATTTTTTGGCACGAGCAGCGGCAGGCTTTCCTCCGGTGCCCCCTCCGTCATCCGGTGTCGTCGATGGAATTTCTGTTTC
TGATTTGCTTTCCCCTTCCATGTTGGAAGGAACTATTTTTTGTAGGGATACTTCTATCCCCTCTTGGCTATCCTCTTTAATGGTAGAGGATGTTAGTTGTACCGAACTTT
TGAGCTCTTAA
Protein sequenceShow/hide protein sequence
MNSDASWNDDVEVGGVSWIIRDTLGSLVLAGCKRISCNWSVKLLEMAAIKEGLMAYLSSNSRGRPTVIVEADAMEVIKLLNSECDDISEAKAFVLNIEDLAAKVGVASFV
KCPRQGNRVAHFLARAAAGFPPVPPPSSGVVDGISVSDLLSPSMLEGTIFCRDTSIPSWLSSLMVEDVSCTELLSS