CuGenDBv2

Gene ID	Lcy05g015920
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNA-directed DNA polymerase (reverse transcriptase)-related family protein
Genome location	Chr05:20714996..20715894
RNA-Seq Expression	Lcy05g015920
Synteny	Lcy05g015920
Gene Ontology terms	GO:0110165 - cellular anatomical structure (cellular component) GO:0003824 - catalytic activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022145148.1 uncharacterized protein LOC111014662 [Momordica charantia]

1.4e-27

54.08

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Query:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLI
        +C SK +GG+GF+DL  FNQAML K SW+I K+P+SL+ ++LRG+YF+ G+F+ A++G+N S  WRSILWG++LF+KG+RW+IG+   +II  D W++
Subjt:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLI

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]

3.1e-27

60.82

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Query:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWL
        +C  K  GGMGFRD+  FNQAML K SWRI + PDSL+AK LRG+YF+ G FL+AK+G   S  WRSILWGRDLF KG RWK+G+   I +  D WL
Subjt:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWL

XP_030477903.1 uncharacterized protein LOC115694940 [Cannabis sativa]

3.3e-29

44.96

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Query:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG
        +C+ K +GG+GFRDL DFNQA+L K  W++   PD L+A++++  YF +G+F +AK+G+  S  W+SILWGR++ IKG RW IG    I I+ED W+  G
Subjt:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG

Query:  CPKVSLTVKDDFKGKRINAIMNEDGGWNV
         P    +     +G  IN ++NEDG W +
Subjt:  CPKVSLTVKDDFKGKRINAIMNEDGGWNV

XP_030478314.1 uncharacterized protein LOC115695388 [Cannabis sativa]

1.6e-28

47.24

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Query:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG
        MC+ K +GGMGFR+L  FNQA+L K  W+I  +PD LMAK+L+  YF   +FL+AK+G+  S  WR I+WGR+L +KG RW IG+   I I+ED WL  G
Subjt:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG

Query:  CPKVSLTVKDDFKGKRINAIMNEDGGW
         P    +  +  +G  I+ ++N DG W
Subjt:  CPKVSLTVKDDFKGKRINAIMNEDGGW

XP_030502370.1 uncharacterized protein LOC115717524 [Cannabis sativa]

5.6e-29

46.51

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Query:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG
        +CR K +GG+GFRDL DFNQAML K  W++   PD LMA++++  YF  G+FL+A IG+  S+ WRSILWGR++  KG RW +G  + I I+ED WL  G
Subjt:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG

Query:  CPKVSLTVKDDFKGKRINAIMNEDGGWNV
         P    +     +G  +N ++NE G W +
Subjt:  CPKVSLTVKDDFKGKRINAIMNEDGGWNV

TrEMBL top hits

e value

%identity

Alignment

A0A803P3X8 Uncharacterized protein

1.2e-29

46.92

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Query:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG
        +C  K  GGMGFRDL DFNQA+L K  W++   PDSL+A+ L+  Y+ + DFL+AK G   S  WR ILWGRDL +KG+RW++   +K+ I+ED WL  G
Subjt:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG

Query:  CPKVSLTVKDDFKGKRINAIMNEDGGWNVE
         P +  T+        +N +MN +G WN E
Subjt:  CPKVSLTVKDDFKGKRINAIMNEDGGWNVE

A0A803P8L6 Uncharacterized protein

3.6e-29

46.15

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Query:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG
        MC+ K +GGMGFR+L  FNQA+L K  W+I  +PD LMAK+L+  YF + +FL+AK+G+  S  WR I+WGR+L +KG RW IG+   I I+ED WL  G
Subjt:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG

Query:  CPKVSLTVKDDFKGKRINAIMNEDGGWNVE
         P    +  +  +G  I+ ++N DG W  +
Subjt:  CPKVSLTVKDDFKGKRINAIMNEDGGWNVE

A0A803PAJ6 Uncharacterized protein

1.6e-29

44.96

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Query:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG
        +C+ K +GG+GFRDL DFNQA+L K  W++   PD L+A++++  YF +G+F +AK+G+  S  W+SILWGR++ IKG RW IG    I I+ED W+  G
Subjt:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG

Query:  CPKVSLTVKDDFKGKRINAIMNEDGGWNV
         P    +     +G  IN+++NEDG W +
Subjt:  CPKVSLTVKDDFKGKRINAIMNEDGGWNV

A0A803Q7N5 Uncharacterized protein

3.0e-28

44.78

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Query:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG
        +CR K +GGMGFRDL DFN+AML K  W++   P+SLMA++L+  YF  G+F+ A IG+  S  WRSILWGR++ ++G RW +G+   I I+ED WL  G
Subjt:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG

Query:  CPKVSLTVKDDFKGKRINAIMNEDGGWNVELGYS
         P    T     +G  ++ ++N  G W +   YS
Subjt:  CPKVSLTVKDDFKGKRINAIMNEDGGWNVELGYS

A0A803QB70 Uncharacterized protein

1.6e-29

44.96

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Query:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG
        +C+ K +GG+GFRDL DFNQA+L K  W++   PD L+A++++  YF +G+F +AK+G+  S  W+SILWGR++ IKG RW IG    I I+ED W+  G
Subjt:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEG

Query:  CPKVSLTVKDDFKGKRINAIMNEDGGWNV
         P    +     +G  IN ++NEDG W +
Subjt:  CPKVSLTVKDDFKGKRINAIMNEDGGWNV

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

5.1e-09

33.33

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Query:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRY----FQDGDFLKAKIGNNSSLTWRSILWG-RDLFIKGMRWKIGSSNKIIIDEDL
        +C  K +GG+G R     N+A+++KV WR+ +  +SL   +L+ +Y     +D  +L  K   + S TWRSI  G RD+   G+ W  G   +I    D 
Subjt:  MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRY----FQDGDFLKAKIGNNSSLTWRSILWG-RDLFIKGMRWKIGSSNKIIIDEDL

Query:  WLIEGCPKVSL
        W + G P + L
Subjt:  WLIEGCPKVSL

P93295 Uncharacterized mitochondrial protein AtMg00310

3.9e-17

39.81

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Query:  MCRSK-GKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIE
        +C+SK   GG+GFRDL  FNQA+L K S+RI   P +L++++LR RYF     ++  +G   S  WRSI+ GR+L  +G+   IG      +  D W+++
Subjt:  MCRSK-GKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIE

Query:  GCP
          P
Subjt:  GCP

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

4.0e-17

40.86

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Query:  KGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWL
        K +GG+GF+D+  FN A+L K  WR+   P+SLMAK+ + RYF   D L A +G+  S  W+SI   +++  +G R  +G+   III    WL
Subjt:  KGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWL

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

2.8e-18

39.81

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Query:  MCRSK-GKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIE
        +C+SK   GG+GFRDL  FNQA+L K S+RI   P +L++++LR RYF     ++  +G   S  WRSI+ GR+L  +G+   IG      +  D W+++
Subjt:  MCRSK-GKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIE

Query:  GCP
          P
Subjt:  GCP

Sequences

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CDS sequence

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ATGTGTCGGAGCAAAGGCAAAGGCGGAATGGGATTCAGAGATCTCCACGATTTTAACCAAGCTATGCTAACAAAAGTGAGTTGGAGAATTACTAAAAGTCCAGACAGCTT
GATGGCCAAAATCTTGAGAGGGAGGTACTTCCAAGATGGGGATTTTCTTAAAGCAAAGATAGGAAATAACTCATCCCTCACTTGGCGTAGCATTTTATGGGGTAGAGATC
TTTTCATCAAAGGGATGAGGTGGAAGATAGGTTCCAGCAACAAGATAATCATCGATGAAGACCTGTGGCTCATTGAGGGATGTCCTAAAGTCTCGTTGACTGTCAAGGAT
GATTTCAAAGGAAAAAGAATCAATGCCATCATGAACGAAGATGGGGGTTGGAATGTTGAGCTGGGATATTCGGGAGCCGATGGATTTTTGGGAAGGGATGGTTCAAAACC
TAAGCAAACCCTGAGCTAA

mRNA sequence

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Protein sequence

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MCRSKGKGGMGFRDLHDFNQAMLTKVSWRITKSPDSLMAKILRGRYFQDGDFLKAKIGNNSSLTWRSILWGRDLFIKGMRWKIGSSNKIIIDEDLWLIEGCPKVSLTVKD
DFKGKRINAIMNEDGGWNVELGYSGADGFLGRDGSKPKQTLS

Lcy05g015920 (gene) of Sponge gourd (P93075) v1 genome