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Lcy05g016000 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g016000
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description4-hydroxy-tetrahydrodipicolinate synthase
Genome locationChr05:21077504..21083593
RNA-Seq ExpressionLcy05g016000
SyntenyLcy05g016000
Gene Ontology termsGO:0009089 - lysine biosynthetic process via diaminopimelate (biological process)
GO:0019877 - diaminopimelate biosynthetic process (biological process)
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase (molecular function)
InterPro domainsIPR002220 - DapA-like
IPR013785 - Aldolase-type TIM barrel
IPR020624 - Schiff base-forming aldolase, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582569.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2985.19Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TSA+DIKSLRL  VTAIKTPYLPDGRFD+EAYDA+VN QIENGA+ VIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

OIV98729.1 hypothetical protein TanjilG_24900 [Lupinus angustifolius]5.3e-3072.16Show/hide
Query:  DLHRFVRKSPI----WTSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        D + F+   P+    WTS  DIKSLRL  +TAIKTPYLPDGRFD+EAYD ++N QIENGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  DLHRFVRKSPI----WTSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

XP_022147065.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Momordica charantia]4.1e-3086.42Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TSA+DIKSLRL  VTAIKTPYLPDGRFD+EAYDA+VN QIENGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

XP_023528690.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Cucurbita pepo subsp. pepo]1.2e-2985.19Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TSA+DIKSLRL  VTAIKTPYLPDGRFD+EAYDA+VN QIENGA+ VIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

XP_038898920.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Benincasa hispida]4.1e-3086.42Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TSA+DIKSLRL  VTAIKTPYLPDGRFD+EAYDA+VN QIENGA GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

TrEMBL top hitse value%identityAlignment
A0A4P1R054 4-hydroxy-tetrahydrodipicolinate synthase2.6e-3072.16Show/hide
Query:  DLHRFVRKSPI----WTSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        D + F+   P+    WTS  DIKSLRL  +TAIKTPYLPDGRFD+EAYD ++N QIENGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  DLHRFVRKSPI----WTSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

A0A6J1CZ39 4-hydroxy-tetrahydrodipicolinate synthase2.0e-3086.42Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TSA+DIKSLRL  VTAIKTPYLPDGRFD+EAYDA+VN QIENGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

A0A6J1E8W7 4-hydroxy-tetrahydrodipicolinate synthase5.8e-3085.19Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TSA+DIKSLRL  VTAIKTPYLPDGRFD+EAYDA+VN QIENGA+ VIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

A0A6J1IVZ1 4-hydroxy-tetrahydrodipicolinate synthase5.8e-3085.19Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TSA+DIKSLRL  VTAIKTPYLPDGRFD+EAYDA+VN QIENGA+ VIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

A0A7J9FLL0 4-hydroxy-tetrahydrodipicolinate synthase7.5e-3085.19Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TSA DIK+LRL  +TAIKTPYLPDGRFD+EAYD +VN QIENGAKGVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG VK+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

SwissProt top hitse value%identityAlignment
P26259 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic1.0e-2874.07Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TS +DI  LRL  +TA+KTPYLPDGRFD+EAYD+++N QIE GA+GVIVGGTTGEG LMSWDE IMLIGHTVNCFG  +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

Q39535 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic2.8e-2975.31Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TS +DI SLRL  +TA+KTPYLPDGRFD+EAYD+++N QIE GA+GVIVGGTTGEG LMSWDE IMLIGHTVNCFG  +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

Q42948 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic2.3e-3181.48Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        T A+DIK+LRL  +TAIKTPYLPDGRFD+EAYD +VN QIENGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

Q9FVC8 4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic2.5e-3077.78Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        T+ +DIK+LR+  +TAIKTPYLPDGRFD+EAYD +VN QI+NGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

Q9LZX6 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic1.5e-3077.78Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        T+ +DI+SLR+  +TAIKTPYLPDGRFD++AYD +VN QIENGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

Arabidopsis top hitse value%identityAlignment
AT2G45440.1 dihydrodipicolinate synthase1.8e-3177.78Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        T+ +DIK+LR+  +TAIKTPYLPDGRFD+EAYD +VN QI+NGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

AT3G60880.1 dihydrodipicolinate synthase 11.0e-3177.78Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        T+ +DI+SLR+  +TAIKTPYLPDGRFD++AYD +VN QIENGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

AT3G60880.2 dihydrodipicolinate synthase 11.0e-3177.78Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        T+ +DI+SLR+  +TAIKTPYLPDGRFD++AYD +VN QIENGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCCGCAAGAGGAGATTAAAGGTAGCGGAGCAAAAGAAGTTAAAGCTGAAGAATTGTGCCTGCATCTGGACCTGAGGATGTGGGATATGCAATCAAAATGCGCCCG
CAAGCCATATAAGGAAAGTAGCCCCATGCTGAAGACAGACTCGTCAAAGCTGTGTAGAGGAAAAATTGCGTTGGAGATGCGGTCGCAACTGGGCTTTCCGATAAAATACC
GAGATTCGCGGGATCTTCACAGATTCGTCCGAAAATCCCCAATCTGGACATCAGCAAATGATATCAAGTCTCTTAGACTTGTAACTGTAACTGCCATTAAAACACCATAT
CTTCCCGATGGTAGATTTGATATAGAAGCTTATGATGCCATGGTGAATGGTCAGATTGAAAATGGAGCTAAAGGTGTGATTGTGGGTGGCACAACTGGTGAAGGTCAGTT
GATGAGCTGGGATGAACTCATAATGCTTATTGGTCACACTGTCAACTGTTTTGGTGGATTAGTCAAGCTTGGATGCATGAATGGTTTCGACAAGGCTCCCCCTTTTTTGT
ATGGAAATGTGAAGAACGTAGTGCATGTCTATGTCAGCAACATAGATAGTGTTTCTCAACCGACTGCATTGCCTGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCACCCGCAAGAGGAGATTAAAGGTAGCGGAGCAAAAGAAGTTAAAGCTGAAGAATTGTGCCTGCATCTGGACCTGAGGATGTGGGATATGCAATCAAAATGCGCCCG
CAAGCCATATAAGGAAAGTAGCCCCATGCTGAAGACAGACTCGTCAAAGCTGTGTAGAGGAAAAATTGCGTTGGAGATGCGGTCGCAACTGGGCTTTCCGATAAAATACC
GAGATTCGCGGGATCTTCACAGATTCGTCCGAAAATCCCCAATCTGGACATCAGCAAATGATATCAAGTCTCTTAGACTTGTAACTGTAACTGCCATTAAAACACCATAT
CTTCCCGATGGTAGATTTGATATAGAAGCTTATGATGCCATGGTGAATGGTCAGATTGAAAATGGAGCTAAAGGTGTGATTGTGGGTGGCACAACTGGTGAAGGTCAGTT
GATGAGCTGGGATGAACTCATAATGCTTATTGGTCACACTGTCAACTGTTTTGGTGGATTAGTCAAGCTTGGATGCATGAATGGTTTCGACAAGGCTCCCCCTTTTTTGT
ATGGAAATGTGAAGAACGTAGTGCATGTCTATGTCAGCAACATAGATAGTGTTTCTCAACCGACTGCATTGCCTGGGTGA
Protein sequenceShow/hide protein sequence
MHPQEEIKGSGAKEVKAEELCLHLDLRMWDMQSKCARKPYKESSPMLKTDSSKLCRGKIALEMRSQLGFPIKYRDSRDLHRFVRKSPIWTSANDIKSLRLVTVTAIKTPY
LPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKLGCMNGFDKAPPFLYGNVKNVVHVYVSNIDSVSQPTALPG