; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy05g016220 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g016220
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
Genome locationChr05:22088570..22089256
RNA-Seq ExpressionLcy05g016220
SyntenyLcy05g016220
Gene Ontology termsNA
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031555.1 retrotransposon protein [Cucumis melo var. makuwa]9.0e-4345.67Show/hide
Query:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC
        M++S+RAPRH WT+ E+  LVE L+ LV +GGW+ DNGTF+ GY AQL  +M EKLPG  V A + I+ R++T K+ +QAIAEM GP CSGFGWN+E KC
Subjt:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC

Query:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVPDDAVNLSGSLDNDIHIPPFTMPNVNMSEDEPRVT-----SD
        I AEKE FD  ++S  A    L    P++++L YVFG+D+AT  G  +E  A++G N P    +     D +   PP     V++S+D+ R +     SD
Subjt:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVPDDAVNLSGSLDNDIHIPPFTMPNVNMSEDEPRVT-----SD

Query:  SQTYATGN
         +T ++G+
Subjt:  SQTYATGN

TYJ96194.1 retrotransposon protein [Cucumis melo var. makuwa]9.0e-4345.67Show/hide
Query:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC
        M++S+RAPRH WT+ E+  LVE L+ LV +GGW+ DNGTF+ GY AQL  +M EKLPG  V A + I+ R++T K+ +QAIAEM GP CSGFGWN+E KC
Subjt:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC

Query:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVPDDAVNLSGSLDNDIHIPPFTMPNVNMSEDEPRVT-----SD
        I AEKE FD  ++S  A    L    P++++L YVFG+D+AT  G  +E  A++G N P    +     D +   PP     V++S+D+ R +     SD
Subjt:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVPDDAVNLSGSLDNDIHIPPFTMPNVNMSEDEPRVT-----SD

Query:  SQTYATGN
         +T ++G+
Subjt:  SQTYATGN

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]6.3e-4452.6Show/hide
Query:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC
        M S SRAP+HTWTK E+ K VE LV LV  GGWR DNGTF+ GY AQL+ +M EKLPG ++   S I+  V++ KK Y AIAEM GP CSGFGWNEEF+C
Subjt:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC

Query:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVP---DDAVNLSGSLDNDIHIPPFTMPNVNMSEDE
        I AE++ FD  I+S  A    L    P+++DL+YVFGKD+ATG    SE    +G NV    +D + L  S D D  IP      V+MS DE
Subjt:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVP---DDAVNLSGSLDNDIHIPPFTMPNVNMSEDE

XP_031739703.1 uncharacterized protein LOC116403241 [Cucumis sativus]1.1e-4348.54Show/hide
Query:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC
        MTSSSR P++ WTK E+A LVES+V LV  GGW+ DN TF+ GY AQL  +M  KL G +V A + I+ R++T K+ YQAIAEM GP CSGFGWN++ KC
Subjt:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC

Query:  IEAEKETFDLLIQSQMACLTSLSPHF---EDLAYVFGKDKATGGGGVSEVMAEMGFNVPDDAVNLSGSLDNDIHIPPFTMPNVNMSEDE---PRVTSDSQ
        I AEKE FD  ++S  A    L+ HF   ++LAY+FGKD+ATG    +E  A++G NVP           ND+ IP  +    NMS+D+   P   +DS+
Subjt:  IEAEKETFDLLIQSQMACLTSLSPHF---EDLAYVFGKDKATGGGGVSEVMAEMGFNVPDDAVNLSGSLDNDIHIPPFTMPNVNMSEDE---PRVTSDSQ

Query:  TYATGN
        T ++G+
Subjt:  TYATGN

XP_031742657.1 uncharacterized protein LOC116404426 [Cucumis sativus]5.3e-4348.54Show/hide
Query:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC
        MTSSSRAP+H WTK E+A LVE +V LV  G W+ DNGTF+ GY AQL  +M  KLPG +V A + I+ R++T K+ YQAIAEM GP CSGFGWN++ KC
Subjt:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC

Query:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVPDDAVNLSGSLDNDIHIPPFTMPNVNMSEDE---PRVTSDSQ
        I AEKE FD  ++S  A    L    P+++  AYVFGKD+A G     E  A++G NVP           ND+ IP  +    NMS+D+   P    DS+
Subjt:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVPDDAVNLSGSLDNDIHIPPFTMPNVNMSEDE---PRVTSDSQ

Query:  TYATGN
        T ++G+
Subjt:  TYATGN

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859533.0e-4452.6Show/hide
Query:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC
        M S SRAP+HTWTK E+ K VE LV LV  GGWR DNGTF+ GY AQL+ +M EKLPG ++   S I+  V++ KK Y AIAEM GP CSGFGWNEEF+C
Subjt:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC

Query:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVP---DDAVNLSGSLDNDIHIPPFTMPNVNMSEDE
        I AE++ FD  I+S  A    L    P+++DL+YVFGKD+ATG    SE    +G NV    +D + L  S D D  IP      V+MS DE
Subjt:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVP---DDAVNLSGSLDNDIHIPPFTMPNVNMSEDE

A0A5A7T9G6 Retrotransposon protein4.4e-4345.67Show/hide
Query:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC
        M++S+RAPRH WT+ E+  LVE L+ LV +GGW+ DNGTF+ GY AQL  +M EKLPG  V A + I+ R++T K+ +QAIAEM GP CSGFGWN+E KC
Subjt:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC

Query:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVPDDAVNLSGSLDNDIHIPPFTMPNVNMSEDEPRVT-----SD
        I AEKE FD  ++S  A    L    P++++L YVFG+D+AT  G  +E  A++G N P    +     D +   PP     V++S+D+ R +     SD
Subjt:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVPDDAVNLSGSLDNDIHIPPFTMPNVNMSEDEPRVT-----SD

Query:  SQTYATGN
         +T ++G+
Subjt:  SQTYATGN

A0A5A7U0H7 Retrotransposon protein3.0e-4452.6Show/hide
Query:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC
        M S SRAP+HTWTK E+ K VE LV LV  GGWR DNGTF+ GY AQL+ +M EKLPG ++   S I+  V++ KK Y AIAEM GP CSGFGWNEEF+C
Subjt:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC

Query:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVP---DDAVNLSGSLDNDIHIPPFTMPNVNMSEDE
        I AE++ FD  I+S  A    L    P+++DL+YVFGKD+ATG    SE    +G NV    +D + L  S D D  IP      V+MS DE
Subjt:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVP---DDAVNLSGSLDNDIHIPPFTMPNVNMSEDE

A0A5D3BCN9 Retrotransposon protein4.4e-4345.67Show/hide
Query:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC
        M++S+RAPRH WT+ E+  LVE L+ LV +GGW+ DNGTF+ GY AQL  +M EKLPG  V A + I+ R++T K+ +QAIAEM GP CSGFGWN+E KC
Subjt:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC

Query:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVPDDAVNLSGSLDNDIHIPPFTMPNVNMSEDEPRVT-----SD
        I AEKE FD  ++S  A    L    P++++L YVFG+D+AT  G  +E  A++G N P    +     D +   PP     V++S+D+ R +     SD
Subjt:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVPDDAVNLSGSLDNDIHIPPFTMPNVNMSEDEPRVT-----SD

Query:  SQTYATGN
         +T ++G+
Subjt:  SQTYATGN

A0A5D3CWL2 Retrotransposon protein4.4e-4345.67Show/hide
Query:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC
        M++S+RAPRH WT+ E+  LVE L+ LV +GGW+ DNGTF+ GY AQL  +M EKLPG  V A + I+ R++T K+ +QAIAEM GP CSGFGWN+E KC
Subjt:  MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKC

Query:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVPDDAVNLSGSLDNDIHIPPFTMPNVNMSEDEPRVT-----SD
        I AEKE FD  ++S  A    L    P++++L YVFG+D+AT  G  +E  A++G N P    +     D +   PP     V++S+D+ R +     SD
Subjt:  IEAEKETFDLLIQSQMAC---LTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVPDDAVNLSGSLDNDIHIPPFTMPNVNMSEDEPRVT-----SD

Query:  SQTYATGN
         +T ++G+
Subjt:  SQTYATGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCAGTTCGTCTAGAGCTCCGAGACACACGTGGACGAAGAACGAGGACGCGAAGCTTGTTGAGTCCCTCGTGTCCTTAGTTCATGTTGGCGGTTGGAGGTTCGATAA
TGGGACGTTCAAATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTTCCTGGACGGGACGTTTCAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCC
GGAAGAAACAATACCAGGCTATTGCAGAGATGATAGGCCCTGGATGCAGTGGCTTCGGCTGGAACGAGGAATTTAAGTGCATCGAGGCGGAGAAAGAAACATTCGACCTA
CTCATCCAATCGCAAATGGCATGCTTAACAAGCCTTTCCCCCCATTTTGAGGACCTAGCATATGTATTTGGGAAGGATAAAGCCACGGGGGGGGGGGGGGTGTCAGAGGT
GATGGCAGAGATGGGGTTTAACGTACCAGATGACGCAGTAAACCTAAGTGGATCCCTGGACAACGACATCCACATCCCGCCGTTCACCATGCCTAATGTGAACATGTCAG
AGGATGAGCCTCGGGTGACGTCGGACAGTCAAACTTACGCAACTGGAAATTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCAGTTCGTCTAGAGCTCCGAGACACACGTGGACGAAGAACGAGGACGCGAAGCTTGTTGAGTCCCTCGTGTCCTTAGTTCATGTTGGCGGTTGGAGGTTCGATAA
TGGGACGTTCAAATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTTCCTGGACGGGACGTTTCAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCC
GGAAGAAACAATACCAGGCTATTGCAGAGATGATAGGCCCTGGATGCAGTGGCTTCGGCTGGAACGAGGAATTTAAGTGCATCGAGGCGGAGAAAGAAACATTCGACCTA
CTCATCCAATCGCAAATGGCATGCTTAACAAGCCTTTCCCCCCATTTTGAGGACCTAGCATATGTATTTGGGAAGGATAAAGCCACGGGGGGGGGGGGGGTGTCAGAGGT
GATGGCAGAGATGGGGTTTAACGTACCAGATGACGCAGTAAACCTAAGTGGATCCCTGGACAACGACATCCACATCCCGCCGTTCACCATGCCTAATGTGAACATGTCAG
AGGATGAGCCTCGGGTGACGTCGGACAGTCAAACTTACGCAACTGGAAATTCGTAA
Protein sequenceShow/hide protein sequence
MTSSSRAPRHTWTKNEDAKLVESLVSLVHVGGWRFDNGTFKSGYQAQLEHLMREKLPGRDVSAQSCIESRVRTRKKQYQAIAEMIGPGCSGFGWNEEFKCIEAEKETFDL
LIQSQMACLTSLSPHFEDLAYVFGKDKATGGGGVSEVMAEMGFNVPDDAVNLSGSLDNDIHIPPFTMPNVNMSEDEPRVTSDSQTYATGNS