; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy05g016420 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g016420
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like
Genome locationChr05:22777631..22778622
RNA-Seq ExpressionLcy05g016420
SyntenyLcy05g016420
Gene Ontology termsGO:0009299 - mRNA transcription (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR006936 - ALOG domain
IPR040222 - ALOG family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581495.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2286.36Show/hide
Query:  STTTTTSSTSDS--HHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        ST+TTT+STSD+  HHHHHLQYPLL P PPSPPP ALSRYESQKRRDWNTFGQ LKNHRPPLTLSR
Subjt:  STTTTTSSTSDS--HHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

XP_022925731.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata]7.5e-2287.5Show/hide
Query:  STTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        ST+TTT+STSD +HHHHLQYPLL P PPSPPP ALSRYESQKRRDWNTFGQ LKNHRPPLTLSR
Subjt:  STTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

XP_022978370.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima]6.8e-2378.67Show/hide
Query:  MEAAFALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        ME+A A+NSY+S +TTT+STSD+HHH    YPLL P PPSPPP ALSRYESQKRRDWNTFGQ LKNHRPPLTLSR
Subjt:  MEAAFALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

XP_023544575.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo]1.8e-2380Show/hide
Query:  MEAAFALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        ME+A A+NSY S +TTT+STSD+HHH H  YPLL P PPSPPP ALSRYESQKRRDWNTFGQ LKNHRPPLTLSR
Subjt:  MEAAFALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

XP_038881876.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida]1.2e-2278.67Show/hide
Query:  MEAAFALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        M+AA A+NSY S +TT   TS+S +HHH QYPLLVP PPSPPP ALSRYESQKRRDWNTFGQ LKNHRPPLTLSR
Subjt:  MEAAFALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

TrEMBL top hitse value%identityAlignment
A0A0A0KPA1 ALOG domain-containing protein1.8e-1675Show/hide
Query:  STTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        +T T+ S+TSD+H H    YPLL+P PPSPP  ALSRYESQKRRDWNTFGQ LKNHRPPLTLSR
Subjt:  STTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

A0A1S3AZK8 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like1.8e-1668.42Show/hide
Query:  MEAA-FALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        MEAA  A+ SY S +TT+         +HL YPLL+P PPSPP  ALSRYESQKRRDWNTFGQ LKNHRPPLTLSR
Subjt:  MEAA-FALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

A0A5A7UB86 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like1.8e-1668.42Show/hide
Query:  MEAA-FALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        MEAA  A+ SY S +TT+         +HL YPLL+P PPSPP  ALSRYESQKRRDWNTFGQ LKNHRPPLTLSR
Subjt:  MEAA-FALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

A0A6J1ED05 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like3.7e-2287.5Show/hide
Query:  STTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        ST+TTT+STSD +HHHHLQYPLL P PPSPPP ALSRYESQKRRDWNTFGQ LKNHRPPLTLSR
Subjt:  STTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

A0A6J1IPW9 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like3.3e-2378.67Show/hide
Query:  MEAAFALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        ME+A A+NSY+S +TTT+STSD+HHH    YPLL P PPSPPP ALSRYESQKRRDWNTFGQ LKNHRPPLTLSR
Subjt:  MEAAFALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

SwissProt top hitse value%identityAlignment
A2XAV5 Protein G1-like64.0e-1076.92Show/hide
Query:  PPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        P PS    +LSRYESQKRRDWNTFGQ L+NHRPPL+LSR
Subjt:  PPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

A2XED8 Protein G1-like76.9e-1085.29Show/hide
Query:  PPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        PPA LSRYESQKRRDWNTF Q L+NHRPPLTL+R
Subjt:  PPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

Q6ATW6 Protein G1-like89.0e-1070.45Show/hide
Query:  PLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        P+   PP   P   LSRYESQKRRDWNTF Q LKNHRPPLTL+R
Subjt:  PLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

Q6K5X1 Protein G1-like64.0e-1076.92Show/hide
Query:  PPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        P PS    +LSRYESQKRRDWNTFGQ L+NHRPPL+LSR
Subjt:  PPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

Q941W1 Protein G1-like76.9e-1085.29Show/hide
Query:  PPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        PPA LSRYESQKRRDWNTF Q L+NHRPPLTL+R
Subjt:  PPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

Arabidopsis top hitse value%identityAlignment
AT1G07090.1 Protein of unknown function (DUF640)2.4e-1080.56Show/hide
Query:  SPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        S PPA  SRYESQKRRDWNTF Q LKNH+PPL LSR
Subjt:  SPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

AT2G31160.1 Protein of unknown function (DUF640)3.2e-1077.78Show/hide
Query:  SPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        S P A  SRYE+QKRRDWNTFGQ L+NHRPPL+LSR
Subjt:  SPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR

AT2G42610.1 Protein of unknown function (DUF640)2.7e-0974.29Show/hide
Query:  SPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLS
        S PP   SRYESQKRRDWNTFGQ LKN RPP+ +S
Subjt:  SPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLS

AT2G42610.2 Protein of unknown function (DUF640)2.7e-0974.29Show/hide
Query:  SPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLS
        S PP   SRYESQKRRDWNTFGQ LKN RPP+ +S
Subjt:  SPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLS

AT3G23290.2 Protein of unknown function (DUF640)1.6e-0954.69Show/hide
Query:  STTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR
        +TTTTTSS+S S                      LSRYE+QKRRDWNTFGQ L+NHRPPL+LSR
Subjt:  STTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCTGCCTTCGCCCTCAACAGTTACAACTCCACCACCACCACCACCAGCTCCACCTCCGACAGCCACCACCACCACCACCTCCAGTACCCTCTCTTGGTTCCCCC
GCCACCATCACCACCGCCAGCTGCACTCAGCAGGTACGAGTCACAGAAGCGGCGAGACTGGAACACGTTCGGGCAGTGCCTAAAGAACCACCGCCCTCCACTAACACTGT
CCCGACAAAGGTCCACACCTCCTGCTGCCCGTCCTTCGGCCACCCACACCCCCTGCCCCCTGCCCCTGCCCGCTCTGGCAGGCCTGGGGCAGCCTCGATGCCCTCATCGA
CCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCCTTCAAATTCGAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCTGCCTTCGCCCTCAACAGTTACAACTCCACCACCACCACCACCAGCTCCACCTCCGACAGCCACCACCACCACCACCTCCAGTACCCTCTCTTGGTTCCCCC
GCCACCATCACCACCGCCAGCTGCACTCAGCAGGTACGAGTCACAGAAGCGGCGAGACTGGAACACGTTCGGGCAGTGCCTAAAGAACCACCGCCCTCCACTAACACTGT
CCCGACAAAGGTCCACACCTCCTGCTGCCCGTCCTTCGGCCACCCACACCCCCTGCCCCCTGCCCCTGCCCGCTCTGGCAGGCCTGGGGCAGCCTCGATGCCCTCATCGA
CCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCCTTCAAATTCGAAACTGA
Protein sequenceShow/hide protein sequence
MEAAFALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSRQRSTPPAARPSATHTPCPLPLPALAGLGQPRCPHR
PPPRRLRGERRPPRDQPLQIRN