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Lcy06g002040 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g002040
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:1965096..1971535
RNA-Seq ExpressionLcy06g002040
SyntenyLcy06g002040
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]6.4e-1933.52Show/hide
Query:  DYWNWMVINLDKEDLAKGIIIMWAIWNFRNKKATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATK-----PRSQGSQE----SWQNPPNNCWRL
        D WNW+V  L  E++A  ++I W IW  RN+         D+ + D  +     S  ++G    + + + +     PR + +       W  PP NCW+L
Subjt:  DYWNWMVINLDKEDLAKGIIIMWAIWNFRNKKATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATK-----PRSQGSQE----SWQNPPNNCWRL

Query:  NVDASWFEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVI
        N DASW E+   GG+GW++ D  G ++  G  KIR K  I ALE   I+ G++ I     Q+R  + +ESDS EVI ++
Subjt:  NVDASWFEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVI

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]3.1e-1328.64Show/hide
Query:  MDYWNWMVINLDKEDLAKGIIIMWAIWNFRNKKATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWRLNVDASWFE
        MDY++W+  + D+     G++++W+IW +RN+   S   Q    +      S               ++   PR+ G    W  P  + W+LNVDA+W +
Subjt:  MDYWNWMVINLDKEDLAKGIIIMWAIWNFRNKKATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWRLNVDASWFE

Query:  KVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILE-GIKSIRDTCAQNRVHLQVESDSTEVISVINDCSEDFSKLKNIVAAISASIH------
         + +GGLGW+VRDS G  I            +KAL     LE GIK            +++ESD  EV+++IN  S   +++  IV  I   +       
Subjt:  KVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILE-GIKSIRDTCAQNRVHLQVESDSTEVISVINDCSEDFSKLKNIVAAISASIH------

Query:  ----------VAHCVAQRAC
                  VAH +A+RAC
Subjt:  ----------VAHCVAQRAC

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]1.8e-1330.46Show/hide
Query:  DYWNWMVINLDKEDLAKGIIIMWAIWNFRNK---KATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWRLNVDASW
        +YW W++    +E+  + +II   IW  RNK   K     ++  Q   D  + + A       R   K  +  +     ++  W+ P +N W+LN DA+W
Subjt:  DYWNWMVINLDKEDLAKGIIIMWAIWNFRNK---KATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWRLNVDASW

Query:  FEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVIN
            ++ G+GW++RD  G +I  G + IR + +I  LE  AI EG+++IR    +  +HL  ESDS E I +++
Subjt:  FEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVIN

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]1.8e-1330.46Show/hide
Query:  DYWNWMVINLDKEDLAKGIIIMWAIWNFRNK---KATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWRLNVDASW
        +YW W++    +E+  + +II   IW  RNK   K     ++  Q   D  + + A       R   K  +  +     ++  W+ P +N W+LN DA+W
Subjt:  DYWNWMVINLDKEDLAKGIIIMWAIWNFRNK---KATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWRLNVDASW

Query:  FEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVIN
            ++ G+GW++RD  G +I  G + IR + +I  LE  AI EG+++IR    +  +HL  ESDS E I +++
Subjt:  FEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVIN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.1e-1430.6Show/hide
Query:  MVINLDKEDLAKGIIIMWAIWNFRNKKATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATK-PRSQGSQESWQNPPNNCWRLNVDASWFEKVSSG
        M+     EDL   +I  W IWN RN         +  T    L   +  S      SYQ   + +   ++  ++  W+ PP + W LN DASW +    G
Subjt:  MVINLDKEDLAKGIIIMWAIWNFRNKKATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATK-PRSQGSQESWQNPPNNCWRLNVDASWFEKVSSG

Query:  GLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVINDCSEDFSKLKNIVAAI
        G+GW++R  +G ++  G + +    ++K LEA AILEG++++ +      +H  +E+DS EV S++N   ED +K   +V  I
Subjt:  GLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVINDCSEDFSKLKNIVAAI

TrEMBL top hitse value%identityAlignment
A0A6J1CQG0 uncharacterized protein LOC1110132163.1e-1933.52Show/hide
Query:  DYWNWMVINLDKEDLAKGIIIMWAIWNFRNKKATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATK-----PRSQGSQE----SWQNPPNNCWRL
        D WNW+V  L  E++A  ++I W IW  RN+         D+ + D  +     S  ++G    + + + +     PR + +       W  PP NCW+L
Subjt:  DYWNWMVINLDKEDLAKGIIIMWAIWNFRNKKATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATK-----PRSQGSQE----SWQNPPNNCWRL

Query:  NVDASWFEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVI
        N DASW E+   GG+GW++ D  G ++  G  KIR K  I ALE   I+ G++ I     Q+R  + +ESDS EVI ++
Subjt:  NVDASWFEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVI

A0A6J1D4B6 uncharacterized protein LOC1110171811.5e-1328.64Show/hide
Query:  MDYWNWMVINLDKEDLAKGIIIMWAIWNFRNKKATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWRLNVDASWFE
        MDY++W+  + D+     G++++W+IW +RN+   S   Q    +      S               ++   PR+ G    W  P  + W+LNVDA+W +
Subjt:  MDYWNWMVINLDKEDLAKGIIIMWAIWNFRNKKATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWRLNVDASWFE

Query:  KVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILE-GIKSIRDTCAQNRVHLQVESDSTEVISVINDCSEDFSKLKNIVAAISASIH------
         + +GGLGW+VRDS G  I            +KAL     LE GIK            +++ESD  EV+++IN  S   +++  IV  I   +       
Subjt:  KVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILE-GIKSIRDTCAQNRVHLQVESDSTEVISVINDCSEDFSKLKNIVAAISASIH------

Query:  ----------VAHCVAQRAC
                  VAH +A+RAC
Subjt:  ----------VAHCVAQRAC

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X18.7e-1430.46Show/hide
Query:  DYWNWMVINLDKEDLAKGIIIMWAIWNFRNK---KATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWRLNVDASW
        +YW W++    +E+  + +II   IW  RNK   K     ++  Q   D  + + A       R   K  +  +     ++  W+ P +N W+LN DA+W
Subjt:  DYWNWMVINLDKEDLAKGIIIMWAIWNFRNK---KATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWRLNVDASW

Query:  FEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVIN
            ++ G+GW++RD  G +I  G + IR + +I  LE  AI EG+++IR    +  +HL  ESDS E I +++
Subjt:  FEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVIN

A0A6J1DNV9 uncharacterized protein LOC1110224031.0e-1430.6Show/hide
Query:  MVINLDKEDLAKGIIIMWAIWNFRNKKATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATK-PRSQGSQESWQNPPNNCWRLNVDASWFEKVSSG
        M+     EDL   +I  W IWN RN         +  T    L   +  S      SYQ   + +   ++  ++  W+ PP + W LN DASW +    G
Subjt:  MVINLDKEDLAKGIIIMWAIWNFRNKKATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATK-PRSQGSQESWQNPPNNCWRLNVDASWFEKVSSG

Query:  GLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVINDCSEDFSKLKNIVAAI
        G+GW++R  +G ++  G + +    ++K LEA AILEG++++ +      +H  +E+DS EV S++N   ED +K   +V  I
Subjt:  GLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVINDCSEDFSKLKNIVAAI

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X28.7e-1430.46Show/hide
Query:  DYWNWMVINLDKEDLAKGIIIMWAIWNFRNK---KATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWRLNVDASW
        +YW W++    +E+  + +II   IW  RNK   K     ++  Q   D  + + A       R   K  +  +     ++  W+ P +N W+LN DA+W
Subjt:  DYWNWMVINLDKEDLAKGIIIMWAIWNFRNK---KATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWRLNVDASW

Query:  FEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVIN
            ++ G+GW++RD  G +I  G + IR + +I  LE  AI EG+++IR    +  +HL  ESDS E I +++
Subjt:  FEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVIN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein4.7e-0431.37Show/hide
Query:  RLNVDASWFEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVINDCSEDFSKLKNIVAAISA
        + N DAS  E     GLGW++R+S G+++  GM K + + + +  E  A+   I +I+ T A     +  E D++ V  +IN  S D  +LK+ +  I +
Subjt:  RLNVDASWFEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVINDCSEDFSKLKNIVAAISA

Query:  SI
         I
Subjt:  SI

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.1e-0522.99Show/hide
Query:  YWNWMVINLDKEDLAKGII------IMWAIWNFRNK-----KATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWR
        YW   V+NL+ E    G I      ++W +W  RN+     K    P    +   D    S    L  +    Q  +N +          W+ PP    +
Subjt:  YWNWMVINLDKEDLAKGII------IMWAIWNFRNK-----KATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWR

Query:  LNVDASWFEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVINDCSEDF
         N DA+W  +    G+GW++R+ +G ++ +G + + R  ++   E +A+   + ++      N   +  ESD+  +++++N  S+DF
Subjt:  LNVDASWFEKVSSGGLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVINDCSEDF

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.6e-0625.6Show/hide
Query:  IMWAIWNFRNKKATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWRLNVDASWFEKVSSGGLGWVVRDSNGSLICV
        +MW IW   N    +      QT  +  L      L     + Q  QN  +         W  P  +  + N DAS  E+ +  GLGW++R+S G++I  
Subjt:  IMWAIWNFRNKKATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWRLNVDASWFEKVSSGGLGWVVRDSNGSLICV

Query:  GMKKIRRKWSIKALEAKAILEGIKS
        GM K + + + +  E   ++  I++
Subjt:  GMKKIRRKWSIKALEAKAILEGIKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTACTGGAATTGGATGGTCATCAACTTAGACAAAGAGGATCTAGCTAAAGGAATCATCATAATGTGGGCTATATGGAATTTCAGGAACAAAAAAGCTACT
TCTTTCCCCAGCCAAGCAGATCAGACCAGAACAGATCATCTTCTAGCTTCAATTGCAGCTAGCCTAGCGGAGAGAGGAAGATCATACCAGAAACGTCAGAATGCG
ACCAAGCCGAGGAGCCAAGGGAGTCAGGAGTCCTGGCAAAATCCGCCCAATAATTGTTGGAGATTAAATGTTGATGCTTCCTGGTTCGAAAAAGTTTCTAGTGGA
GGCCTCGGATGGGTGGTTCGTGACTCGAATGGATCCTTGATTTGTGTGGGCATGAAGAAAATCAGAAGAAAGTGGAGTATCAAAGCTCTTGAAGCAAAAGCTATC
CTCGAAGGAATTAAGAGTATTAGAGATACCTGTGCTCAAAATCGCGTGCATCTTCAGGTGGAATCAGACTCGACTGAAGTAATCAGCGTGATTAACGATTGCTCG
GAGGACTTTTCGAAATTGAAGAACATCGTCGCAGCCATCTCTGCTTCGATCCATGTAGCGCACTGTGTAGCTCAGAGAGCTTGTTTTTGGTCCGGCGAGATGAGG
GTGTCGTCGGAGCAGTCTGTTGATGCTTCTCTTTCGCGGGAAGATGAAACTTGTTTTTGGGCCCCAGAATTCCTGGGTGGTTTTATTCTGTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTACTGGAATTGGATGGTCATCAACTTAGACAAAGAGGATCTAGCTAAAGGAATCATCATAATGTGGGCTATATGGAATTTCAGGAACAAAAAAGCTACT
TCTTTCCCCAGCCAAGCAGATCAGACCAGAACAGATCATCTTCTAGCTTCAATTGCAGCTAGCCTAGCGGAGAGAGGAAGATCATACCAGAAACGTCAGAATGCG
ACCAAGCCGAGGAGCCAAGGGAGTCAGGAGTCCTGGCAAAATCCGCCCAATAATTGTTGGAGATTAAATGTTGATGCTTCCTGGTTCGAAAAAGTTTCTAGTGGA
GGCCTCGGATGGGTGGTTCGTGACTCGAATGGATCCTTGATTTGTGTGGGCATGAAGAAAATCAGAAGAAAGTGGAGTATCAAAGCTCTTGAAGCAAAAGCTATC
CTCGAAGGAATTAAGAGTATTAGAGATACCTGTGCTCAAAATCGCGTGCATCTTCAGGTGGAATCAGACTCGACTGAAGTAATCAGCGTGATTAACGATTGCTCG
GAGGACTTTTCGAAATTGAAGAACATCGTCGCAGCCATCTCTGCTTCGATCCATGTAGCGCACTGTGTAGCTCAGAGAGCTTGTTTTTGGTCCGGCGAGATGAGG
GTGTCGTCGGAGCAGTCTGTTGATGCTTCTCTTTCGCGGGAAGATGAAACTTGTTTTTGGGCCCCAGAATTCCTGGGTGGTTTTATTCTGTACTAA
Protein sequenceShow/hide protein sequence
MDYWNWMVINLDKEDLAKGIIIMWAIWNFRNKKATSFPSQADQTRTDHLLASIAASLAERGRSYQKRQNATKPRSQGSQESWQNPPNNCWRLNVDASWFEKVSSG
GLGWVVRDSNGSLICVGMKKIRRKWSIKALEAKAILEGIKSIRDTCAQNRVHLQVESDSTEVISVINDCSEDFSKLKNIVAAISASIHVAHCVAQRACFWSGEMR
VSSEQSVDASLSREDETCFWAPEFLGGFILY