; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy06g003040 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g003040
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionBHLH domain-containing protein
Genome locationChr06:2882429..2882892
RNA-Seq ExpressionLcy06g003040
SyntenyLcy06g003040
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573012.1 putative serine/threonine-protein kinase PBL3, partial [Cucurbita argyrosperma subsp. sororia]3.2e-3594.57Show/hide
Query:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+ VRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_004152438.1 transcription factor PRE3 [Cucumis sativus]3.2e-3594.57Show/hide
Query:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+ VRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_016899225.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]6.4e-3695.65Show/hide
Query:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+GVRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_022955105.1 transcription factor PRE3-like [Cucurbita moschata]3.2e-3594.57Show/hide
Query:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+ VRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_023542851.1 transcription factor PRE3-like [Cucurbita pepo subsp. pepo]4.1e-3593.48Show/hide
Query:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+ +RISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

TrEMBL top hitse value%identityAlignment
A0A0A0LQQ1 BHLH domain-containing protein1.5e-3594.57Show/hide
Query:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+ VRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A1S4DU40 transcription factor PRE3-like3.1e-3695.65Show/hide
Query:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+GVRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A5D3BJ22 Transcription factor PRE3-like4.9e-3495.45Show/hide
Query:  SRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        SRSRQS+GVRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  SRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A6J1GU92 transcription factor PRE3-like1.5e-3594.57Show/hide
Query:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+ VRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A6J1K5U5 transcription factor PRE3-like1.3e-3493.48Show/hide
Query:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG SRSRQS+ VRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI79.9e-2469.57Show/hide
Query:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS RSRSR S+  RI+DEQI DLV KLQ LLPE R   R +D+V +++VLQETC+YIRSLHREVDDLSERL+ELLA +D  TAQAA+IR LL
Subjt:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

B8APB5 Transcription factor ILI61.4e-2575.82Show/hide
Query:  SGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        S RSRSRQS   RI+DEQI+DLV KLQ LLPE R   R +D+V +S+VLQETCNYIRSLH+EVDDLSERLSELLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q0DUR2 Transcription factor ILI61.4e-2575.82Show/hide
Query:  SGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        S RSRSRQS   RI+DEQI+DLV KLQ LLPE R   R +D+V +S+VLQETCNYIRSLH+EVDDLSERLSELLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q8GW32 Transcription factor PRE61.6e-2675.53Show/hide
Query:  MSGR--SRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS R  SRSRQS   RISD+QI+DLV KLQ L+PE+RR  R SDKVSASKVLQETCNYIR+LHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSGR--SRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q9CA64 Transcription factor PRE32.1e-2978.72Show/hide
Query:  MSG-RSRSRQSAGV-RISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG RSRSRQS+G  RIS++QI DL+ KLQQLLPE+ R++R SDKVSA++VLQ+TCNYIR+LHREVDDLSERLSELLA SDTAQAA+IRSLLTQ
Subjt:  MSG-RSRSRQSAGV-RISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.2e-2775.53Show/hide
Query:  MSGR--SRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS R  SRSRQS   RISD+QI+DLV KLQ L+PE+RR  R SDKVSASKVLQETCNYIR+LHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSGR--SRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.5e-3078.72Show/hide
Query:  MSG-RSRSRQSAGV-RISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG RSRSRQS+G  RIS++QI DL+ KLQQLLPE+ R++R SDKVSA++VLQ+TCNYIR+LHREVDDLSERLSELLA SDTAQAA+IRSLLTQ
Subjt:  MSG-RSRSRQSAGV-RISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein7.3e-2264.13Show/hide
Query:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELL--ATSDTAQAAIIRSLL
        MS R   + S   RISD+Q+ DLV KL+Q LPEI    R SDKVSASKVLQETCNYIR LHREVD+LS+RLS+LL     D+ +AA+IRSLL
Subjt:  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELL--ATSDTAQAAIIRSLL

AT3G47710.1 BANQUO 32.1e-2467.03Show/hide
Query:  SGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        S +SRSRQ+    I+DEQI DLV +L +LLPE+  NNR S KVSAS+VLQETC+YIR+L +EVDDLSERLS+LL ++D+AQAA+IRSLL Q
Subjt:  SGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

AT5G15160.1 BANQUO 27.3e-2263.44Show/hide
Query:  MSGRSRSRQ-SAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS   RSRQ S+  RISD+QITDL+ KL+Q +PEIR+ NR S+ VSASKVLQETCNYIR+L++E DDLS+RL++LL + D  + QAA+IRSL+
Subjt:  MSGRSRSRQ-SAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGCAGATCTCGTTCGAGGCAATCAGCTGGTGTAAGAATCAGCGACGAGCAGATCACGGACCTCGTTCACAAGTTGCAACAGCTGTTGCCCGAGATTCGT
CGCAACAACAGGCACTCTGACAAGGTTTCAGCATCGAAGGTGTTGCAAGAGACATGCAACTACATTCGAAGTCTACATAGAGAAGTGGATGATCTGAGTGAGAGA
CTGTCGGAGTTGTTGGCCACATCGGACACAGCCCAAGCGGCCATTATAAGAAGCTTGCTCACGCAGTGA
mRNA sequenceShow/hide mRNA sequence
CCAAATTCCAACAACCCTATAGCCTCTAAAGCTAGCTGCTTTTTTTCTCATTATATAAGAACAAGGTCACCATGTCTGGCAGATCTCGTTCGAGGCAATCAGCTG
GTGTAAGAATCAGCGACGAGCAGATCACGGACCTCGTTCACAAGTTGCAACAGCTGTTGCCCGAGATTCGTCGCAACAACAGGCACTCTGACAAGGTTTCAGCAT
CGAAGGTGTTGCAAGAGACATGCAACTACATTCGAAGTCTACATAGAGAAGTGGATGATCTGAGTGAGAGACTGTCGGAGTTGTTGGCCACATCGGACACAGCCC
AAGCGGCCATTATAAGAAGCTTGCTCACGCAGTGAAACTCTTTAATTTAATTAATTATGAGATGG
Protein sequenceShow/hide protein sequence
MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ