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Lcy06g004340 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g004340
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr06:3969674..3971655
RNA-Seq ExpressionLcy06g004340
SyntenyLcy06g004340
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0046483 - heterocycle metabolic process (biological process)
GO:1901360 - organic cyclic compound metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039966.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.7e-1041.58Show/hide
Query:  WQMLYRAVGINFPLHFQANGLCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEA
        W +LY +V     L  +   LC      K  +++ ++    +A+ALW IW E NARIFN    + A I E I A A  W+S S LF NY  SSIALN  A
Subjt:  WQMLYRAVGINFPLHFQANGLCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEA

Query:  F
        F
Subjt:  F

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.7e-0846.91Show/hide
Query:  LCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEAF
        LC    S K  +++ ++    +A+ALW IW E NARIFN    + A I E I A A  W+S S LF+NY  SSIALN  AF
Subjt:  LCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEAF

TYK02997.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.6e-0846.32Show/hide
Query:  HFQANGLC----EEAFSLKGSSQR----IILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEAF
        H  +N  C    E  FS+   +Q+    +ILF   +A+ALW IW E NARIFN    + A I E I A A  W+S S LF+NY  SSIALN  AF
Subjt:  HFQANGLC----EEAFSLKGSSQR----IILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEAF

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.6e-0846.91Show/hide
Query:  LCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEAF
        LC    S K  +++ ++    +A+ALW IW E NARIFN    + A I E I A A  W+S S LF+NY  SSIALN  AF
Subjt:  LCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEAF

TYK24536.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.7e-1041.58Show/hide
Query:  WQMLYRAVGINFPLHFQANGLCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEA
        W +LY +V     L  +   LC      K  +++ ++    +A+ALW IW E NARIFN    + A I E I A A  W+S S LF NY  SSIALN  A
Subjt:  WQMLYRAVGINFPLHFQANGLCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEA

Query:  F
        F
Subjt:  F

TrEMBL top hitse value%identityAlignment
A0A5A7TCY9 LINE-1 retrotransposable element ORF2 protein1.8e-1041.58Show/hide
Query:  WQMLYRAVGINFPLHFQANGLCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEA
        W +LY +V     L  +   LC      K  +++ ++    +A+ALW IW E NARIFN    + A I E I A A  W+S S LF NY  SSIALN  A
Subjt:  WQMLYRAVGINFPLHFQANGLCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEA

Query:  F
        F
Subjt:  F

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein1.3e-0846.91Show/hide
Query:  LCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEAF
        LC    S K  +++ ++    +A+ALW IW E NARIFN    + A I E I A A  W+S S LF+NY  SSIALN  AF
Subjt:  LCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEAF

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein2.2e-0846.91Show/hide
Query:  LCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEAF
        LC    S K  +++ ++    +A+ALW IW E NARIFN    + A I E I A A  W+S S LF+NY  SSIALN  AF
Subjt:  LCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEAF

A0A5D3DLM2 LINE-1 retrotransposable element ORF2 protein1.8e-1041.58Show/hide
Query:  WQMLYRAVGINFPLHFQANGLCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEA
        W +LY +V     L  +   LC      K  +++ ++    +A+ALW IW E NARIFN    + A I E I A A  W+S S LF NY  SSIALN  A
Subjt:  WQMLYRAVGINFPLHFQANGLCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEA

Query:  F
        F
Subjt:  F

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein2.2e-0846.91Show/hide
Query:  LCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEAF
        LC    S K  +++ ++    +A+ALW IW E NARIFN    + A I E I A A  W+S S LF+NY  SSIALN  AF
Subjt:  LCEEAFSLKGSSQRIILFQAIFAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACTCCATATCGAACTCGTGGATGCTGCCAGAGTTGTTGGAAATTTGAGGTTGGATCCATTTCTTTTTCGCTTTGGTATTGTTGCAACCCCGTCTCCGCT
GTATTTATAGAGAATTTTGGACAACTTATTCAATATGGCTGCGAAAAATTATTAGGCGTTCCTGGTGTAATGAGGCAAGTAGCTTTCTGGCAAATGCTCTATAGA
GCAGTGGGAATAAATTTTCCGCTGCATTTTCAGGCTAATGGTCTCTGCGAAGAAGCTTTCTCTCTTAAGGGCTCTTCTCAAAGAATTATTCTCTTCCAAGCCATC
TTTGCAGCCGCTTTGTGGTTCATTTGGCAAGAGTGCAATGCTCGGATTTTTAACAACTCCTACAGTTCGAATGCCCATATTTGTGAACAAATCATTGCCTCTGCC
TCTTTCTGGTCTTCCACTTCAAAGCTCTTTGCTAATTATGATGTATCTTCCATAGCTTTGAATTGTGAAGCTTTTATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTACTCCATATCGAACTCGTGGATGCTGCCAGAGTTGTTGGAAATTTGAGGTTGGATCCATTTCTTTTTCGCTTTGGTATTGTTGCAACCCCGTCTCCGCT
GTATTTATAGAGAATTTTGGACAACTTATTCAATATGGCTGCGAAAAATTATTAGGCGTTCCTGGTGTAATGAGGCAAGTAGCTTTCTGGCAAATGCTCTATAGA
GCAGTGGGAATAAATTTTCCGCTGCATTTTCAGGCTAATGGTCTCTGCGAAGAAGCTTTCTCTCTTAAGGGCTCTTCTCAAAGAATTATTCTCTTCCAAGCCATC
TTTGCAGCCGCTTTGTGGTTCATTTGGCAAGAGTGCAATGCTCGGATTTTTAACAACTCCTACAGTTCGAATGCCCATATTTGTGAACAAATCATTGCCTCTGCC
TCTTTCTGGTCTTCCACTTCAAAGCTCTTTGCTAATTATGATGTATCTTCCATAGCTTTGAATTGTGAAGCTTTTATGTAG
Protein sequenceShow/hide protein sequence
MATPYRTRGCCQSCWKFEVGSISFSLWYCCNPVSAVFIENFGQLIQYGCEKLLGVPGVMRQVAFWQMLYRAVGINFPLHFQANGLCEEAFSLKGSSQRIILFQAI
FAAALWFIWQECNARIFNNSYSSNAHICEQIIASASFWSSTSKLFANYDVSSIALNCEAFM