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Lcy06g004610 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g004610
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:4291025..4291939
RNA-Seq ExpressionLcy06g004610
SyntenyLcy06g004610
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OIT01587.1 hypothetical protein A4A49_56826, partial [Nicotiana attenuata]1.7e-0434.21Show/hide
Query:  RSNNRKAPPQNHF-KLNADATVVNREMGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLLHDRDHNFN
        + N +  PP++HF KLN D        G G +IRNSN E +     F     +   + AE +ALL G++LA    + P+  E+DS+ +  LLH  D +F+
Subjt:  RSNNRKAPPQNHF-KLNADATVVNREMGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLLHDRDHNFN

Query:  ENYSSNLSTQAVFF
             NL+T   +F
Subjt:  ENYSSNLSTQAVFF

XP_006487889.1 uncharacterized protein LOC102617714 [Citrus sinensis]1.7e-0437.76Show/hide
Query:  DSRSNNRK----APPQNHFKLNADATVVNREM--GTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNL
        + +  NRK     PP   FK+N DA V  ++   G G+IIRNSNGE +A A    R+   +     EA+A++ G++ A  +G SP+  E DS+ V +L
Subjt:  DSRSNNRK----APPQNHFKLNADATVVNREM--GTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNL

XP_015382596.1 uncharacterized protein LOC107175573 [Citrus sinensis]2.2e-0438.24Show/hide
Query:  SDADSRSNNR-KAPPQNHFKLNADATV--VNREMGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLLH
        SD D  S+   K PP   FK+N DA +   N+ +G GI+IRNS G+ +  A   ++    V++AEAEA     G+ +A  +G  P+  E DSK V +L+ 
Subjt:  SDADSRSNNR-KAPPQNHFKLNADATV--VNREMGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLLH

Query:  DR
         R
Subjt:  DR

XP_024042628.1 uncharacterized protein LOC112099434 [Citrus clementina]1.3e-0434.55Show/hide
Query:  ADSRSNNRKA---PPQNHFKLNADATVVNRE--MGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLLH
        AD      KA   PP + FK+N DA +   +   G G +IR++ G  +A A   TR   +V +AEAE  A+  G+++A+++G++ +  E DS++V +L++
Subjt:  ADSRSNNRKA---PPQNHFKLNADATVVNRE--MGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLLH

Query:  DRDHNFNENY
        +R  + NE Y
Subjt:  DRDHNFNENY

XP_024042921.1 uncharacterized protein LOC112099707 [Citrus clementina]4.5e-0536.26Show/hide
Query:  KAPPQNHFKLNADATVVN--REMGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLLHDR
        K PP+N +K+N DA + N  + +G G+++RN NG+ +A A   +  +  V +AEAE  A+  G+++A  +GI+ V  E D +V  +L ++R
Subjt:  KAPPQNHFKLNADATVVN--REMGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLLHDR

TrEMBL top hitse value%identityAlignment
A0A1J6IRY3 RNase H domain-containing protein (Fragment)8.2e-0534.21Show/hide
Query:  RSNNRKAPPQNHF-KLNADATVVNREMGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLLHDRDHNFN
        + N +  PP++HF KLN D        G G +IRNSN E +     F     +   + AE +ALL G++LA    + P+  E+DS+ +  LLH  D +F+
Subjt:  RSNNRKAPPQNHF-KLNADATVVNREMGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLLHDRDHNFN

Query:  ENYSSNLSTQAVFF
             NL+T   +F
Subjt:  ENYSSNLSTQAVFF

A0A1S8ACU2 Ribonuclease H-like superfamily protein1.4e-0437.78Show/hide
Query:  PPQNHFKLNADATV--VNREMGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSK-VVWNLLHDR
        PPQ HFK N DA V     ++G G++IR+ +G  +  A N T+    V  A+AEA A+  G+++ +E+ +SP+  E D + VV  +LH++
Subjt:  PPQNHFKLNADATV--VNREMGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSK-VVWNLLHDR

A0A2P6QCS7 Putative ubiquitinyl hydrolase 12.4e-0443.02Show/hide
Query:  PPQNHFKLNADATVVNRE--MGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLL
        PPQ  +KLN D +  N+   +G G +IRN NGE +A    F     + +  EAE +ALL G+ LA  SG S +  E DSK+  NLL
Subjt:  PPQNHFKLNADATVVNRE--MGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLL

A0A5C7H0P0 Uncharacterized protein2.4e-0438.46Show/hide
Query:  KAPPQNHFKLNADATVVNR--EMGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLLHDR
        K P +  FK+N DA+   R  + G G+IIR+  G  +A   +      SVE    EAQA L+G+ LA++ G+S V  E D+  V  LL D+
Subjt:  KAPPQNHFKLNADATVVNR--EMGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLLHDR

A0A6P4NYV4 uncharacterized protein LOC1084684962.4e-0436.14Show/hide
Query:  PQNHFKLNADATVVNREMGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLL
        P++  K+N DATV+NR +G G I+R++NG  +A    F   +  V WAE +A  L  G++LAL   I+ +  E ++  + N +
Subjt:  PQNHFKLNADATVVNREMGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGTGATGCAGACTCCAGATCCAACAACCGGAAGGCACCGCCTCAAAACCACTTCAAGCTTAACGCTGATGCAACAGTGGTAAACAGAGAGATGGGAACT
GGAATTATCATCCGAAATTCAAATGGTGAACCGATGGCTGTTGCTGAAAACTTCACAAGAACAAGTTGTTCAGTGGAATGGGCAGAAGCAGAAGCCCAGGCGCTA
CTAGATGGAGTACGATTAGCGTTGGAATCAGGAATATCCCCAGTTTGGACAGAGATGGATTCAAAAGTAGTTTGGAATCTACTTCATGACCGTGACCATAATTTC
AACGAAAATTACTCCTCTAATTTATCAACTCAAGCAGTTTTCTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGTGATGCAGACTCCAGATCCAACAACCGGAAGGCACCGCCTCAAAACCACTTCAAGCTTAACGCTGATGCAACAGTGGTAAACAGAGAGATGGGAACT
GGAATTATCATCCGAAATTCAAATGGTGAACCGATGGCTGTTGCTGAAAACTTCACAAGAACAAGTTGTTCAGTGGAATGGGCAGAAGCAGAAGCCCAGGCGCTA
CTAGATGGAGTACGATTAGCGTTGGAATCAGGAATATCCCCAGTTTGGACAGAGATGGATTCAAAAGTAGTTTGGAATCTACTTCATGACCGTGACCATAATTTC
AACGAAAATTACTCCTCTAATTTATCAACTCAAGCAGTTTTCTTCTAG
Protein sequenceShow/hide protein sequence
MGSDADSRSNNRKAPPQNHFKLNADATVVNREMGTGIIIRNSNGEPMAVAENFTRTSCSVEWAEAEAQALLDGVRLALESGISPVWTEMDSKVVWNLLHDRDHNF
NENYSSNLSTQAVFF