; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy06g004830 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g004830
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein ROOT INITIATION DEFECTIVE 3-like
Genome locationChr06:4507117..4508602
RNA-Seq ExpressionLcy06g004830
SyntenyLcy06g004830
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0030174 - regulation of DNA-dependent DNA replication initiation (biological process)
GO:0005656 - nuclear pre-replicative complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0097344 - Rix1 complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR019775 - WD40 repeat, conserved site
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573122.1 Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. sororia]8.6e-13787.27Show/hide
Query:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV
        MSN GE MALAVCSDKNMGSGITI D KTGETLLHIPTCASP YGLI LRNEFLVASQTRKEGSVGGGS+F+WSL+KPQ PLRSYPLEPIGPLASTKD V
Subjt:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV

Query:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS
        YLAGGAHSGNIHLWEVGSGKLLKLW+GHHKPIKFILFSWDDSFLITGSADGMICVWSMI LLDVELVGS+QPILYCLMEHKSSLTGL+TMSG SMS+IIS
Subjt:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS

Query:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK
         SLDGSLKFWDLMSGM+RGTQ H+EGIT IVLHPTEQ LF G++DG+IFA RLEFGLDN I IKE+QL    GHK
Subjt:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK

KGN64400.1 hypothetical protein Csa_013691 [Cucumis sativus]6.0e-13886.18Show/hide
Query:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV
        M NGGE MALAVCSD+NMG GITI DVKTG+TLLHIPTCASPPYG ICLRNEF VASQTRKEGSVGGGSIFIWSLNKP PP+ SY LE IGPLASTKD V
Subjt:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV

Query:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS
        YLAGG HSGNIHLWEVGSG+LLKLW+GHHKP+K +LFSWDDSFLITGS+DGMICVWSMI LLDVELVG+SQPI+YCLMEH SSLTGLLTMSGCSMSIIIS
Subjt:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS

Query:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK
         SLDGSLKFWDLMSGM+RGTQAHIEGITAIVLHPTEQ+LF G++DGQIFA RLEFG DN I I+ENQ+L PKGHK
Subjt:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK

XP_031738866.1 protein ROOT INITIATION DEFECTIVE 3 [Cucumis sativus]6.0e-13886.18Show/hide
Query:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV
        M NGGE MALAVCSD+NMG GITI DVKTG+TLLHIPTCASPPYG ICLRNEF VASQTRKEGSVGGGSIFIWSLNKP PP+ SY LE IGPLASTKD V
Subjt:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV

Query:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS
        YLAGG HSGNIHLWEVGSG+LLKLW+GHHKP+K +LFSWDDSFLITGS+DGMICVWSMI LLDVELVG+SQPI+YCLMEH SSLTGLLTMSGCSMSIIIS
Subjt:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS

Query:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK
         SLDGSLKFWDLMSGM+RGTQAHIEGITAIVLHPTEQ+LF G++DGQIFA RLEFG DN I I+ENQ+L PKGHK
Subjt:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK

XP_038894085.1 protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Benincasa hispida]2.3e-13787.27Show/hide
Query:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV
        M   GE+M LA+CSD+NMGSGITI DVKTG+TLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPP+ SY LEPIGPLASTKDSV
Subjt:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV

Query:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS
        YLAGG HSGNIHLWEVGSGKLLK+W+G  KPIK +LFSWDDSFLITGSADGMICVWSMI LLDVELVG+SQPILYCLMEH SSLTGLLTMSGCSMSIIIS
Subjt:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS

Query:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK
         SL+GSLKFWDLMSGM+RGTQAH EGITAIVLHPTEQLLF G+ DG+IFA RL FGLDN I IKENQLL PKGHK
Subjt:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK

XP_038894087.1 protein ROOT INITIATION DEFECTIVE 3-like isoform X3 [Benincasa hispida]2.3e-13787.27Show/hide
Query:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV
        M   GE+M LA+CSD+NMGSGITI DVKTG+TLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPP+ SY LEPIGPLASTKDSV
Subjt:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV

Query:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS
        YLAGG HSGNIHLWEVGSGKLLK+W+G  KPIK +LFSWDDSFLITGSADGMICVWSMI LLDVELVG+SQPILYCLMEH SSLTGLLTMSGCSMSIIIS
Subjt:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS

Query:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK
         SL+GSLKFWDLMSGM+RGTQAH EGITAIVLHPTEQLLF G+ DG+IFA RL FGLDN I IKENQLL PKGHK
Subjt:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK

TrEMBL top hitse value%identityAlignment
A0A0A0LR59 WD_REPEATS_REGION domain-containing protein2.9e-13886.18Show/hide
Query:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV
        M NGGE MALAVCSD+NMG GITI DVKTG+TLLHIPTCASPPYG ICLRNEF VASQTRKEGSVGGGSIFIWSLNKP PP+ SY LE IGPLASTKD V
Subjt:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV

Query:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS
        YLAGG HSGNIHLWEVGSG+LLKLW+GHHKP+K +LFSWDDSFLITGS+DGMICVWSMI LLDVELVG+SQPI+YCLMEH SSLTGLLTMSGCSMSIIIS
Subjt:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS

Query:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK
         SLDGSLKFWDLMSGM+RGTQAHIEGITAIVLHPTEQ+LF G++DGQIFA RLEFG DN I I+ENQ+L PKGHK
Subjt:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK

A0A1S4DUX3 protein ROOT INITIATION DEFECTIVE 3-like isoform X11.6e-13684.73Show/hide
Query:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV
        M NGGE MALAVCSD+NMG GITI DVKTG+TLLHIP+CASPPYG ICLRNEF VASQTRKEGSVGGG+IFIWSLNKPQPP+ SY LE IGPLASTKDSV
Subjt:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV

Query:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS
        YLAGG HSGNIHLWEVGSGKLLKLW+GHHKP+K +LFSWDDSFLITGS+DGMICVWSMI LLDVELV +SQP++YCLM+HKSSLTGLLTMSGCSMSIIIS
Subjt:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS

Query:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK
         SLDGSLKFWDLMSGM++GTQAHIEGITAIVLHPTEQ+LF G++DGQI A RLE G DN I +KENQ+L PKGHK
Subjt:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK

A0A5A7UJJ9 Protein ROOT INITIATION DEFECTIVE 3-like isoform X21.6e-13684.73Show/hide
Query:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV
        M NGGE MALAVCSD+NMG GITI DVKTG+TLLHIP+CASPPYG ICLRNEF VASQTRKEGSVGGG+IFIWSLNKPQPP+ SY LE IGPLASTKDSV
Subjt:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV

Query:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS
        YLAGG HSGNIHLWEVGSGKLLKLW+GHHKP+K +LFSWDDSFLITGS+DGMICVWSMI LLDVELV +SQP++YCLM+HKSSLTGLLTMSGCSMSIIIS
Subjt:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS

Query:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK
         SLDGSLKFWDLMSGM++GTQAHIEGITAIVLHPTEQ+LF G++DGQI A RLE G DN I +KENQ+L PKGHK
Subjt:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK

A0A5D3BJZ3 Protein ROOT INITIATION DEFECTIVE 3-like isoform X21.6e-13684.73Show/hide
Query:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV
        M NGGE MALAVCSD+NMG GITI DVKTG+TLLHIP+CASPPYG ICLRNEF VASQTRKEGSVGGG+IFIWSLNKPQPP+ SY LE IGPLASTKDSV
Subjt:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV

Query:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS
        YLAGG HSGNIHLWEVGSGKLLKLW+GHHKP+K +LFSWDDSFLITGS+DGMICVWSMI LLDVELV +SQP++YCLM+HKSSLTGLLTMSGCSMSIIIS
Subjt:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS

Query:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK
         SLDGSLKFWDLMSGM++GTQAHIEGITAIVLHPTEQ+LF G++DGQI A RLE G DN I +KENQ+L PKGHK
Subjt:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK

A0A6J1GSK9 protein ROOT INITIATION DEFECTIVE 3-like1.2e-13686.91Show/hide
Query:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV
        MSN GE MALAVCSDKNMGSGITI D KTGETLLHIPTCASP YGLI LRNEFLVASQTRKEGSVGGGS+F+WSL+KPQ PLRSYPLEPIGPLASTKD  
Subjt:  MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSV

Query:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS
        YLAGGAHSGNIHLWEVGSGKLLKLW+GHHKPIKFILFSWDDSFLITGSADGMICVWSMI LLDVELVGS+QPILYCLMEHKSSLTGL+TMSG SMS+IIS
Subjt:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS

Query:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK
         SLDGSLKFWDLMSGM+RGTQ H+EGIT IVLHPTEQ LF G++DG+IFA RLEFGLDN I IKE+QL    GHK
Subjt:  CSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK

SwissProt top hitse value%identityAlignment
A0A1L8HX76 WD repeat-containing protein 186.9e-2028.07Show/hide
Query:  TISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSL-NKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGKL
        T+ +  TG  LL      +   GL  L  ++L+       G +G   I +W L  + Q   +     P+  L+++ + +YL  G  + +I+LWEV +G L
Subjt:  TISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSL-NKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGKL

Query:  LKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQ
        L + N H++ +  + F+ D S +I+G+ D ++ VW +  +L VE     +P  Y    H   +T +    G   + + + SLD ++K WD+ SG +  + 
Subjt:  LKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQ

Query:  AHIEGITAIVLHPTEQLLFFGSIDGQIF
             IT++   P E  LF G  DG I+
Subjt:  AHIEGITAIVLHPTEQLLFFGSIDGQIF

Q3SZD4 WD repeat-containing protein 181.5e-1927.87Show/hide
Query:  MALAVCSDKNMGS-GITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSL-NKPQPPLRSYPLEPIGPLASTKDSVYLAGG
        M +AVC+D         + ++ +G  LL      + P GL  L  E+L+A+Q      +G   I  W L  K Q   +     P+  L ++ + +Y+  G
Subjt:  MALAVCSDKNMGS-GITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSL-NKPQPPLRSYPLEPIGPLASTKDSVYLAGG

Query:  AHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIISCSLDG
          S NI+LWEV +G LL + + H++ +  + F+ D S  I+G  D ++  WS+  +L  +   +  P  +    H   +T L    G  ++ + + SLD 
Subjt:  AHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIISCSLDG

Query:  SLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIF
        ++K W++ SG +  +     GI A+ +   E  +F G  DG IF
Subjt:  SLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIF

Q4PHV3 Pre-rRNA-processing protein IPI39.6e-1431.65Show/hide
Query:  LASTKDSVYLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSS-------QPILYC-LMEHKSSL
        +A + +   +AGG+  G I LW++ +G LL  ++ H++ +  + ++ D + L+TGS D  I VWS+  LL      SS        P  YC L +H  ++
Subjt:  LASTKDSVYLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSS-------QPILYC-LMEHKSSL

Query:  TGLLTMSG--CSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLF
        T L   SG     ++++S S D S+K WDL +  +  T    + I  +VL  TE+  F
Subjt:  TGLLTMSG--CSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLF

Q9BV38 WD repeat-containing protein 183.8e-1828.16Show/hide
Query:  MALAVCSDK--NMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSL-NKPQPPLRSYPLEPIGPLASTKDSVYLAG
        M +AVC+D    M S I + ++ +G  LL      + P GL  L  E+L+A+Q      +G   I  W L  K Q   +     P+  L ++ + +Y+  
Subjt:  MALAVCSDK--NMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSL-NKPQPPLRSYPLEPIGPLASTKDSVYLAG

Query:  GAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIISCSLD
        G  + +IHLWEV +G LL + + H++ +  + F+ D S  I+G  D ++ VWS+  +L  +      P  +    H   +T L    G  ++ + + SLD
Subjt:  GAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIISCSLD

Query:  GSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIF
         ++K W++ SG +  +      I A+ +   E  +F G  +G IF
Subjt:  GSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIF

Q9M3B4 Protein ROOT INITIATION DEFECTIVE 32.9e-4239.34Show/hide
Query:  MALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAH
        M + V +  ++  GI   D+KTG   L    CASP +GL  +  +FL +SQ     +   GSIF WS  KPQ  ++SYP+EPI  LA+  +  YL GG  
Subjt:  MALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAH

Query:  SGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILY--CLMEHKSSLTGLLTMSGCSMSIIISCSLDG
        SG+I+LWEV +GKLLK W+GH++ +  ++FS DDS L++GS DG I VWS+IRL D +        LY     EH  S+T ++   G   ++IIS S D 
Subjt:  SGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILY--CLMEHKSSLTGLLTMSGCSMSIIISCSLDG

Query:  SLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIF
        + K W L  G +         I A+ L P   + + G+ D +I+
Subjt:  SLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIF

Arabidopsis top hitse value%identityAlignment
AT1G11160.1 Transducin/WD40 repeat-like superfamily protein5.6e-0925.85Show/hide
Query:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS
        +LA G+   N+ +W+      ++ + GH + I  I FS D  ++++G  D ++ VW +          ++  +L+    H+  +  L         ++ +
Subjt:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS

Query:  CSLDGSLKFWDLMS-GMVRGTQAHIEGITAIVLHPTEQLLFFGSIDG
         S D ++KFWDL +  ++  T+    G+ AI  HP  Q LF G  DG
Subjt:  CSLDGSLKFWDLMS-GMVRGTQAHIEGITAIVLHPTEQLLFFGSIDG

AT1G61210.1 Transducin/WD40 repeat-like superfamily protein4.7e-0823.29Show/hide
Query:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS
        +LA G+   N+ +W++     ++ + GH + I  I F+ D  ++++G  D ++ VW +          ++  +L+    H+  +  L         ++ +
Subjt:  YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIIS

Query:  CSLDGSLKFWDLMS-GMVRGTQAHIEGITAIVLHPTEQLLFFGSID
         S D ++KFWDL +  ++  T+    G+ +I  HP  + LF G  D
Subjt:  CSLDGSLKFWDLMS-GMVRGTQAHIEGITAIVLHPTEQLLFFGSID

AT3G49180.1 Transducin/WD40 repeat-like superfamily protein2.0e-4339.34Show/hide
Query:  MALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAH
        M + V +  ++  GI   D+KTG   L    CASP +GL  +  +FL +SQ     +   GSIF WS  KPQ  ++SYP+EPI  LA+  +  YL GG  
Subjt:  MALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAH

Query:  SGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILY--CLMEHKSSLTGLLTMSGCSMSIIISCSLDG
        SG+I+LWEV +GKLLK W+GH++ +  ++FS DDS L++GS DG I VWS+IRL D +        LY     EH  S+T ++   G   ++IIS S D 
Subjt:  SGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILY--CLMEHKSSLTGLLTMSGCSMSIIISCSLDG

Query:  SLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIF
        + K W L  G +         I A+ L P   + + G+ D +I+
Subjt:  SLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIF

AT3G49660.1 Transducin/WD40 repeat-like superfamily protein1.0e-1023.12Show/hide
Query:  EPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGKLLK-LWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTG
        +P+  +   +D   +   ++ G   +W+ G+G  +K L +  + P+ F+ FS +  F++ G+ D  + +W++     ++         YC+    S   G
Subjt:  EPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGKLLK-LWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTG

Query:  LLTMSGCSMSIIISCSLDGSLKFWDLMS-GMVRGTQAHIEGITAIVLHPTEQLLFFGSID
           +SG         S D  +  W+L S  +++  + H E +  +  HPTE L+  GS+D
Subjt:  LLTMSGCSMSIIISCSLDGSLKFWDLMS-GMVRGTQAHIEGITAIVLHPTEQLLFFGSID

AT5G25150.1 TBP-associated factor 53.6e-0826.39Show/hide
Query:  IWSLNKPQP-PLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSS
        IWS+++ QP  + +  L  +  +    +  Y+A G+    + LW+V +G+ ++++ GH   +  +  S D  ++ +G  DG I +W +          S+
Subjt:  IWSLNKPQP-PLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSS

Query:  QPILYCLMEHKSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMS
           +  LM H S +   L+ SG   S++ S S D ++K WD+ S
Subjt:  QPILYCLMEHKSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAATGGAGGCGAAAGAATGGCGTTGGCTGTGTGCAGCGACAAGAACATGGGATCGGGGATTACGATTTCGGATGTGAAAACAGGCGAAACTCTCCTTCACATTCC
GACCTGCGCTTCGCCTCCGTACGGTTTGATTTGCTTGAGAAATGAGTTCCTCGTTGCTTCTCAGACTCGTAAGGAAGGGTCAGTCGGTGGTGGATCCATCTTCATTTGGT
CCCTGAACAAGCCTCAACCCCCTCTTAGGAGCTATCCATTGGAGCCCATTGGACCACTTGCCTCAACAAAGGATAGTGTATATCTTGCAGGCGGAGCTCATTCTGGAAAT
ATTCATCTTTGGGAGGTTGGTAGTGGTAAATTGCTCAAGCTTTGGAATGGTCACCATAAACCCATAAAATTCATCCTGTTTTCTTGGGACGATTCGTTTCTCATTACTGG
TTCAGCCGATGGAATGATTTGTGTCTGGTCCATGATTCGTTTGCTGGATGTGGAACTTGTGGGAAGCTCACAGCCAATACTGTATTGTCTAATGGAACATAAGTCATCTT
TAACTGGTCTACTCACTATGTCTGGCTGCTCGATGTCAATAATCATTTCATGCTCCCTCGATGGCAGTTTAAAGTTTTGGGATTTAATGTCAGGAATGGTCAGGGGAACT
CAAGCTCATATAGAAGGGATCACTGCAATTGTTCTTCACCCAACCGAGCAACTCTTGTTCTTTGGGAGCATTGACGGGCAAATTTTTGCTTGCAGGCTTGAATTTGGATT
GGATAACTTTATTGCCATTAAAGAAAACCAGTTACTTACACCAAAAGGACACAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAATGGAGGCGAAAGAATGGCGTTGGCTGTGTGCAGCGACAAGAACATGGGATCGGGGATTACGATTTCGGATGTGAAAACAGGCGAAACTCTCCTTCACATTCC
GACCTGCGCTTCGCCTCCGTACGGTTTGATTTGCTTGAGAAATGAGTTCCTCGTTGCTTCTCAGACTCGTAAGGAAGGGTCAGTCGGTGGTGGATCCATCTTCATTTGGT
CCCTGAACAAGCCTCAACCCCCTCTTAGGAGCTATCCATTGGAGCCCATTGGACCACTTGCCTCAACAAAGGATAGTGTATATCTTGCAGGCGGAGCTCATTCTGGAAAT
ATTCATCTTTGGGAGGTTGGTAGTGGTAAATTGCTCAAGCTTTGGAATGGTCACCATAAACCCATAAAATTCATCCTGTTTTCTTGGGACGATTCGTTTCTCATTACTGG
TTCAGCCGATGGAATGATTTGTGTCTGGTCCATGATTCGTTTGCTGGATGTGGAACTTGTGGGAAGCTCACAGCCAATACTGTATTGTCTAATGGAACATAAGTCATCTT
TAACTGGTCTACTCACTATGTCTGGCTGCTCGATGTCAATAATCATTTCATGCTCCCTCGATGGCAGTTTAAAGTTTTGGGATTTAATGTCAGGAATGGTCAGGGGAACT
CAAGCTCATATAGAAGGGATCACTGCAATTGTTCTTCACCCAACCGAGCAACTCTTGTTCTTTGGGAGCATTGACGGGCAAATTTTTGCTTGCAGGCTTGAATTTGGATT
GGATAACTTTATTGCCATTAAAGAAAACCAGTTACTTACACCAAAAGGACACAAGTAA
Protein sequenceShow/hide protein sequence
MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGN
IHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGT
QAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK