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Lcy06g005380 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g005380
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionTransforming growth factor-beta receptor-associated protein 1 isoform X1
Genome locationChr06:4961854..4962817
RNA-Seq ExpressionLcy06g005380
SyntenyLcy06g005380
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]7.2e-0940Show/hide
Query:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY
        W P +   WK+N++A W   +N+GG+GWI+RD  G +I+A C+I+ A+  I  LE +AI +GL+ + + +
Subjt:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY
XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]7.2e-0940Show/hide
Query:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY
        W P +   WK+N+DA W   +N+ G+GWI+RD  G +I+ GC+I+ A+  I  LE +AI +GL+ + + +
Subjt:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY
XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]7.2e-0940Show/hide
Query:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY
        W P +   WK+N+DA W   +N+ G+GWI+RD  G +I+ GC+I+ A+  I  LE +AI +GL+ + + +
Subjt:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY
XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.2e-0938.78Show/hide
Query:  MSKMSYYQNQSKYQEKSSA----KNLQSHGCWNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLS
        + +++ +  +S YQ ++S     K L +   W P  +  W +N+DA+W DS++ GG+GWIIR   G ++ AG + VEA + +K LEA AIL+GL++L+
Subjt:  MSKMSYYQNQSKYQEKSSA----KNLQSHGCWNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLS
XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]5.5e-0937.21Show/hide
Query:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY-RSYSEMDKPPLVVES
        W P +   WK+N+DA W   +N+GG+GWI+RD  G +I+A C+I+  +  I  LE +AI +GL+ + + + R   +    P+ +ES
Subjt:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY-RSYSEMDKPPLVVES
TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134123.5e-0940Show/hide
Query:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY
        W P +   WK+N++A W   +N+GG+GWI+RD  G +I+A C+I+ A+  I  LE +AI +GL+ + + +
Subjt:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY
A0A6J1DL64 uncharacterized protein LOC111022134 isoform X13.5e-0940Show/hide
Query:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY
        W P +   WK+N+DA W   +N+ G+GWI+RD  G +I+ GC+I+ A+  I  LE +AI +GL+ + + +
Subjt:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY
A0A6J1DNV9 uncharacterized protein LOC1110224031.6e-0938.78Show/hide
Query:  MSKMSYYQNQSKYQEKSSA----KNLQSHGCWNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLS
        + +++ +  +S YQ ++S     K L +   W P  +  W +N+DA+W DS++ GG+GWIIR   G ++ AG + VEA + +K LEA AIL+GL++L+
Subjt:  MSKMSYYQNQSKYQEKSSA----KNLQSHGCWNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLS
A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X23.5e-0940Show/hide
Query:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY
        W P +   WK+N+DA W   +N+ G+GWI+RD  G +I+ GC+I+ A+  I  LE +AI +GL+ + + +
Subjt:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY
A0A6J1DSV1 uncharacterized protein LOC1110236082.7e-0937.21Show/hide
Query:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY-RSYSEMDKPPLVVES
        W P +   WK+N+DA W   +N+GG+GWI+RD  G +I+A C+I+  +  I  LE +AI +GL+ + + + R   +    P+ +ES
Subjt:  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESY-RSYSEMDKPPLVVES
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAAAATGAGCTACTACCAGAATCAGAGTAAGTACCAGGAGAAAAGCTCAGCGAAGAACCTCCAGAGTCATGGGTGTTGGAATCCGTCGTCCGTTGGCCAT
TGGAAGATGAACTCGGACGCAACCTGGTTCGACTCCTCAAATTCGGGGGGAGTGGGATGGATCATTCGTGACTCATCCGGTTCTTTGATCGAAGCAGGGTGCAAG
ATAGTTGAGGCGAAAGATGAAATAAAAAATTTGGAAGCCATAGCCATTTTAGATGGTCTCAAGCATTTATCAGAAAGCTACAGATCGTACTCGGAGATGGATAAG
CCTCCGTTGGTGGTGGAATCGAAGTTTTCAAGCTCCTTAACCTTGAATCTGAAGATTGCTCGGAAATCTCGCTGA
mRNA sequenceShow/hide mRNA sequence
CCGACCCCGACCGACCGATGCTCAGCCCTACTAATGTTAACTGTTATCTGTGTAGGAGAAAGGCAGAGGATGGAGTCCACTTATTTTGGCAATGCAAACTGGTAA
GGAAATTGTGGTCTAGCCTATTTCCTCCTCTAAATCAGGTTTTTGCCTCGTGTAGGGATTGGTGGAGCTTCAAGGAGTATTGGGAATTTCTGCTCAAAACTATTG
GCAGAGATGAAGCGGGGAGAGCAAGTCACCTTATTTGAGCCATTTGGCAAACGAGGAACCAGTTCAAGAAGTCGAATTCCAGGAAAGATACAAATCAATTTCACA
AAGATATTATGAGTAAAATGAGCTACTACCAGAATCAGAGTAAGTACCAGGAGAAAAGCTCAGCGAAGAACCTCCAGAGTCATGGGTGTTGGAATCCGTCGTCCG
TTGGCCATTGGAAGATGAACTCGGACGCAACCTGGTTCGACTCCTCAAATTCGGGGGGAGTGGGATGGATCATTCGTGACTCATCCGGTTCTTTGATCGAAGCAG
GGTGCAAGATAGTTGAGGCGAAAGATGAAATAAAAAATTTGGAAGCCATAGCCATTTTAGATGGTCTCAAGCATTTATCAGAAAGCTACAGATCGTACTCGGAGA
TGGATAAGCCTCCGTTGGTGGTGGAATCGAAGTTTTCAAGCTCCTTAACCTTGAATCTGAAGATTGCTCGGAAATCTCGCTGATTGTCGACGAGATTGAGGATCA
GGCAAAGCAATTGAATGTGGTTGCCTTCGTGCATTGTCCCAGAAAATGTAATTTTTTGGCGCATAGACTAGCGCACGCGTCCGTTTCTAAAGGCAATTTTGCCTT
CTGCTCTTTTGACCATTCTCATTACTTGAGAATGGATTTCGGCCAATTAGATTTTTGTTGTAAAGGCTGGTTTTTCTCCATTTTGGAGAAAGAAGTTGTTGTACC
TAACTTTTGTCCCCTTTAA
Protein sequenceShow/hide protein sequence
MSKMSYYQNQSKYQEKSSAKNLQSHGCWNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESYRSYSEMDK
PPLVVESKFSSSLTLNLKIARKSR