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Lcy06g006130 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g006130
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
Genome locationChr06:5763199..5763627
RNA-Seq ExpressionLcy06g006130
SyntenyLcy06g006130
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7814608.1 putative ZmL1 non-LTR retrotransposon protein [Senna tora]1.6e-0635.83Show/hide
Query:  GLSFIKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDLSSRFQDVSFRHCGRNSNTVAHCGAKFGCNFVFDVVD
        G+  I+YLEA AILEG+K   +    N   +E+E D  +V  +L  +  DLS  + I + ILD  S+F  +SF+   R++N VAH   K   NF      
Subjt:  GLSFIKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDLSSRFQDVSFRHCGRNSNTVAHCGAKFGCNFVFDVVD

Query:  SQAASHSWEKGQLFWAPDLP
        S   S+S     + W  D P
Subjt:  SQAASHSWEKGQLFWAPDLP

KAF7821986.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora]1.4e-0533.86Show/hide
Query:  NKLTKNGLSFIKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDLSSRFQDVSFRHCGRNSNTVAHCGAKFGCNF
        +K  K G + I+Y+EA A+LEG+K     C    I   IESDA  VV +L+    D+S    + + IL+L S F  +SF    R +N VAH  A    NF
Subjt:  NKLTKNGLSFIKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDLSSRFQDVSFRHCGRNSNTVAHCGAKFGCNF

Query:  VFDVVDSQAASHSWEKGQLFWAPDLPP
         ++               + W  D PP
Subjt:  VFDVVDSQAASHSWEKGQLFWAPDLPP

KAF7822031.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora]2.0e-0433.33Show/hide
Query:  IKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDLSSRFQDVSFRHCGRNSNTVAHCGAKFGCNFVFDVVDSQAA
        I+Y+EA A+LEG+K     C    I   IESDA  VV +L+    D+S    + + IL+L S F  + F    R +N VAH  A    NF  +       
Subjt:  IKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDLSSRFQDVSFRHCGRNSNTVAHCGAKFGCNFVFDVVDSQAA

Query:  SHSWEKGQLFWAPDLPP
                + W  D PP
Subjt:  SHSWEKGQLFWAPDLPP

XP_021753633.1 uncharacterized protein LOC110719026 [Chenopodium quinoa]4.8e-0635.34Show/hide
Query:  IKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDLSSRFQDVSFRHCGRNSNTVAHCGAKFGCNFVFDVVDSQAA
        ++  EAKAI  GL++ +   +R+   L +ESD ++V+Q L     DLSE   I D IL L S F +V + +  R  N VAH  A F              
Subjt:  IKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDLSSRFQDVSFRHCGRNSNTVAHCGAKFGCNFVFDVVDSQAA

Query:  SHSWEKGQLFWAPDLP
         H WE GQ  W   +P
Subjt:  SHSWEKGQLFWAPDLP

XP_021763631.1 uncharacterized protein LOC110728264 [Chenopodium quinoa]4.5e-0437.21Show/hide
Query:  NGLSFIKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDLSSRFQDVSFRHCGRNSNTVAH
        NG   I  +EA A+L G++ V D   R    LE+ SD ++V+++L+G+  + S T+ I   IL  +  F  V F  C R  N VAH
Subjt:  NGLSFIKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDLSSRFQDVSFRHCGRNSNTVAH

TrEMBL top hitse value%identityAlignment
A0A803L9N8 Uncharacterized protein2.2e-0437.21Show/hide
Query:  NGLSFIKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDLSSRFQDVSFRHCGRNSNTVAH
        NG   I  +EA A+L G++ V D   R    LE+ SD ++V+++L+G+  + S T+ I   IL  +  F  V F  C R  N VAH
Subjt:  NGLSFIKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDLSSRFQDVSFRHCGRNSNTVAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCGAATGGTTCCACGATCTGCATCGGATTTCAACAAATTAACCAAAAATGGCCTATCATTTATCAAGTACCTAGAAGCTAAAGCCATCTTGGAAGGCTTGAAGAT
GGTGAGTGATACCTGTCTTCGGAACAACATCCCTTTGGAAATCGAGTCTGACGCCATAGAAGTCGTCCAAATTCTTTCAGGGACGGCGAAGGATTTATCGGAGACGAAGA
CGATTACGGACGCCATTCTCGATCTCTCATCTCGATTTCAAGATGTCTCATTTAGACATTGTGGTAGAAATTCCAATACAGTAGCCCACTGTGGGGCAAAGTTTGGTTGT
AATTTTGTTTTTGATGTTGTAGACTCTCAGGCAGCCTCCCATTCGTGGGAAAAAGGGCAGTTGTTTTGGGCTCCTGATCTTCCTCCTTGGTTCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTCGAATGGTTCCACGATCTGCATCGGATTTCAACAAATTAACCAAAAATGGCCTATCATTTATCAAGTACCTAGAAGCTAAAGCCATCTTGGAAGGCTTGAAGAT
GGTGAGTGATACCTGTCTTCGGAACAACATCCCTTTGGAAATCGAGTCTGACGCCATAGAAGTCGTCCAAATTCTTTCAGGGACGGCGAAGGATTTATCGGAGACGAAGA
CGATTACGGACGCCATTCTCGATCTCTCATCTCGATTTCAAGATGTCTCATTTAGACATTGTGGTAGAAATTCCAATACAGTAGCCCACTGTGGGGCAAAGTTTGGTTGT
AATTTTGTTTTTGATGTTGTAGACTCTCAGGCAGCCTCCCATTCGTGGGAAAAAGGGCAGTTGTTTTGGGCTCCTGATCTTCCTCCTTGGTTCTTTTAG
Protein sequenceShow/hide protein sequence
MTRMVPRSASDFNKLTKNGLSFIKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDLSSRFQDVSFRHCGRNSNTVAHCGAKFGC
NFVFDVVDSQAASHSWEKGQLFWAPDLPPWFF