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Lcy06g006190 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g006190
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase
Genome locationChr06:5817328..5817717
RNA-Seq ExpressionLcy06g006190
SyntenyLcy06g006190
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO99000.1 reverse transcriptase [Corchorus capsularis]6.9e-0430.34Show/hide
Query:  KLIIELDSIQVVHLLEGKEEDLTEISIFVEEAKRLCSVLGVKDIRHIPRGSNKMTNFLAQKAGSTKSSISWSNDFPIWFL-QLNNEDIV
        ++I+E D++ ++  +   E D + I  +VEEA+ L  +     ++HI +  N + + LAQ   S    I W  D P+W    LNN+ +V
Subjt:  KLIIELDSIQVVHLLEGKEEDLTEISIFVEEAKRLCSVLGVKDIRHIPRGSNKMTNFLAQKAGSTKSSISWSNDFPIWFL-QLNNEDIV

XP_015387358.1 uncharacterized protein LOC107177672 [Citrus sinensis]4.8e-0532.67Show/hide
Query:  MEACAVVEGLK-SVPLASPKLIIELDSIQVVHLLEGKEEDLTEISIFVEEAKRLCSVLGVKDIRHIPRGSNKMTNFLAQKAGSTKSSISWSNDFPIWFLQ
        MEA AV+ G++ +  +    +IIE DS +VV L+  ++  LTE+S  VEE K+   +     ++++PR  N + + +A+ A   ++S+ W  DFP+  + 
Subjt:  MEACAVVEGLK-SVPLASPKLIIELDSIQVVHLLEGKEEDLTEISIFVEEAKRLCSVLGVKDIRHIPRGSNKMTNFLAQKAGSTKSSISWSNDFPIWFLQ

Query:  L
        L
Subjt:  L

XP_026411123.1 uncharacterized protein LOC113306393 [Papaver somniferum]4.1e-0432.69Show/hide
Query:  EACAVVEGLK-SVPLASPKLIIELDSIQVVHLLEGKEEDLT-EISIFVEEAKRLCSVLGVKDIRHIPRGSNKMTNFLAQKAGSTKSSISWSNDFPIWFLQ
        EA A++E +K +  +    L ++ DS+ VV+ L GK   +    + F+ +   L       +I H+PR +N + + LA+ A S+ S ISW +DFP W + 
Subjt:  EACAVVEGLK-SVPLASPKLIIELDSIQVVHLLEGKEEDLT-EISIFVEEAKRLCSVLGVKDIRHIPRGSNKMTNFLAQKAGSTKSSISWSNDFPIWFLQ

Query:  LNNE
        L  E
Subjt:  LNNE

TrEMBL top hitse value%identityAlignment
A0A1R3JW24 Reverse transcriptase3.4e-0430.34Show/hide
Query:  KLIIELDSIQVVHLLEGKEEDLTEISIFVEEAKRLCSVLGVKDIRHIPRGSNKMTNFLAQKAGSTKSSISWSNDFPIWFL-QLNNEDIV
        ++I+E D++ ++  +   E D + I  +VEEA+ L  +     ++HI +  N + + LAQ   S    I W  D P+W    LNN+ +V
Subjt:  KLIIELDSIQVVHLLEGKEEDLTEISIFVEEAKRLCSVLGVKDIRHIPRGSNKMTNFLAQKAGSTKSSISWSNDFPIWFL-QLNNEDIV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCTTGTGCTGTGGTAGAAGGTTTGAAATCGGTCCCTCTTGCCTCGCCCAAGTTGATTATCGAGCTTGACTCCATTCAAGTGGTACATCTTCTTGAGGGGAAGGA
AGAGGATCTAACGGAGATCTCCATTTTTGTCGAGGAAGCCAAGCGACTTTGCTCTGTTTTGGGGGTGAAGGATATTAGGCACATTCCAAGGGGGTCTAACAAGATGACCA
ACTTTTTGGCCCAAAAAGCGGGTTCAACTAAGTCTTCTATTAGTTGGTCTAATGATTTTCCTATCTGGTTTCTCCAATTGAATAATGAGGATATTGTGAATGAGAGTAAC
TTTGGTGGGGGTGCCTGTCCCACTAATGACTGCCCAATGGGCGTTTTTGCTGGCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCTTGTGCTGTGGTAGAAGGTTTGAAATCGGTCCCTCTTGCCTCGCCCAAGTTGATTATCGAGCTTGACTCCATTCAAGTGGTACATCTTCTTGAGGGGAAGGA
AGAGGATCTAACGGAGATCTCCATTTTTGTCGAGGAAGCCAAGCGACTTTGCTCTGTTTTGGGGGTGAAGGATATTAGGCACATTCCAAGGGGGTCTAACAAGATGACCA
ACTTTTTGGCCCAAAAAGCGGGTTCAACTAAGTCTTCTATTAGTTGGTCTAATGATTTTCCTATCTGGTTTCTCCAATTGAATAATGAGGATATTGTGAATGAGAGTAAC
TTTGGTGGGGGTGCCTGTCCCACTAATGACTGCCCAATGGGCGTTTTTGCTGGCTTTTAA
Protein sequenceShow/hide protein sequence
MEACAVVEGLKSVPLASPKLIIELDSIQVVHLLEGKEEDLTEISIFVEEAKRLCSVLGVKDIRHIPRGSNKMTNFLAQKAGSTKSSISWSNDFPIWFLQLNNEDIVNESN
FGGGACPTNDCPMGVFAGF