; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy06g006290 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g006290
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReplication protein A subunit
Genome locationChr06:5903781..5904200
RNA-Seq ExpressionLcy06g006290
SyntenyLcy06g006290
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0034645 - cellular macromolecule biosynthetic process (biological process)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONK55571.1 uncharacterized protein A4U43_UnF1510 [Asparagus officinalis]1.1e-1038.68Show/hide
Query:  MTIAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQ
        + I ELK +Q+ WS  + V+R  +   FK+ +G   N QK ++ID+EG  +Q  L N+LIEKF+D L +G+TY I +G +KP + +Y  +N   E++L+ 
Subjt:  MTIAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQ

Query:  SSEVEE
         + + E
Subjt:  SSEVEE

ONK81712.1 uncharacterized protein A4U43_C01F32110, partial [Asparagus officinalis]8.7e-1138.68Show/hide
Query:  MTIAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQ
        + I ELK +Q+ WS  + V+R  +   FK+ +G   N QK ++ID+EG  +Q  LFN+LIEKF+  L +G+TY I +G +KP + +Y  +N   E++L+ 
Subjt:  MTIAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQ

Query:  SSEVEE
         + + E
Subjt:  SSEVEE

XP_022155232.1 replication protein A 70 kDa DNA-binding subunit E-like [Momordica charantia]2.9e-3061.82Show/hide
Query:  MTIAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQ
        M I +L+ FQ+GW+ T+T+VRKF  Q   +RKGEPL I KF+V+D +G  +Q+ LFN+LIEKF D LE+GKTY I DG+IKPID RY NV+ +IEISLSQ
Subjt:  MTIAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQ

Query:  SSEVEEIEGE
        +S+V+EIEGE
Subjt:  SSEVEEIEGE

XP_042508246.1 replication protein A 70 kDa DNA-binding subunit D-like [Macadamia integrifolia]4.3e-1033.02Show/hide
Query:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS
        I +L S++  W   + V+ K   + +K+ KG P   QK  ++D EG  +Q   FN++++   D L  GKTY I D  +K ++  ++N+N   E++L+ +S
Subjt:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS

Query:  EVEEIE
        ++EE+E
Subjt:  EVEEIE

XP_042511724.1 replication protein A 70 kDa DNA-binding subunit D-like [Macadamia integrifolia]1.9e-1033.96Show/hide
Query:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS
        I +L S++  W   + V+ K   +++K+ KG P   QK  ++D EG  +Q   FN++++   D L  GKTY I D  +K ++  ++NVN   E++L+ +S
Subjt:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS

Query:  EVEEIE
        ++EE+E
Subjt:  EVEEIE

TrEMBL top hitse value%identityAlignment
A0A1R3L7I6 DUF223 domain-containing protein5.5e-1138.68Show/hide
Query:  MTIAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQ
        + I ELK +Q+ WS  + V+R  +   FK+ +G   N QK ++ID+EG  +Q  L N+LIEKF+D L +G+TY I +G +KP + +Y  +N   E++L+ 
Subjt:  MTIAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQ

Query:  SSEVEE
         + + E
Subjt:  SSEVEE

A0A5P1FUD9 DUF223 domain-containing protein (Fragment)4.2e-1138.68Show/hide
Query:  MTIAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQ
        + I ELK +Q+ WS  + V+R  +   FK+ +G   N QK ++ID+EG  +Q  LFN+LIEKF+  L +G+TY I +G +KP + +Y  +N   E++L+ 
Subjt:  MTIAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQ

Query:  SSEVEE
         + + E
Subjt:  SSEVEE

A0A6J1DNS8 replication protein A 70 kDa DNA-binding subunit E-like1.4e-3061.82Show/hide
Query:  MTIAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQ
        M I +L+ FQ+GW+ T+T+VRKF  Q   +RKGEPL I KF+V+D +G  +Q+ LFN+LIEKF D LE+GKTY I DG+IKPID RY NV+ +IEISLSQ
Subjt:  MTIAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQ

Query:  SSEVEEIEGE
        +S+V+EIEGE
Subjt:  SSEVEEIEGE

A0A7J6GQF2 Replication protein A subunit8.8e-0933.33Show/hide
Query:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS
        +  L  +Q  W+  + V  K   + +K+ +GE   +    + D+EG  +Q T+FNE   KF DK E GK Y I  G++K  + +++ V +  E++L+++S
Subjt:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS

Query:  EVEEIEGE
        EVEE+  E
Subjt:  EVEEIEGE

A0A803P4W3 Uncharacterized protein1.2e-0833.33Show/hide
Query:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS
        +  L  +Q  W+  + V  K   + +K+ +GE   +    + D+EG  +Q T+FNE   KF DK E GK Y I  G++K  + +++ V +  E++L+++S
Subjt:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS

Query:  EVEEIEGE
        EVEE+  E
Subjt:  EVEEIEGE

SwissProt top hitse value%identityAlignment
Q6YZ49 Replication protein A 70 kDa DNA-binding subunit A2.7e-0728.16Show/hide
Query:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS
        I+ L  +Q  W+    V  K   +++ + KG+   +  F ++D +G  +++T FN L+++F + +E GK Y +  G+++P    Y ++N+  EI L   S
Subjt:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS

Query:  EVE
         V+
Subjt:  EVE

Q9FHJ6 Replication protein A 70 kDa DNA-binding subunit C1.2e-0727.78Show/hide
Query:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS
        IA L  +Q  W+  + V  K   ++F + +GE   +  F ++D +G  +++T FN+ +++F DK+  G  Y I  G++KP    + ++ +  EI L  +S
Subjt:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS

Query:  EVEEIEGE
         ++  E +
Subjt:  EVEEIEGE

Q9FME0 Replication protein A 70 kDa DNA-binding subunit D1.5e-1031.48Show/hide
Query:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS
        +  L  +Q  W+  + V  K + + +K+ +GE   +    + D+EG  +Q T+FN+   KF D+ + GK Y I  GS+K  + +++ V +  E++L+++S
Subjt:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS

Query:  EVEEIEGE
        EVEE   E
Subjt:  EVEEIEGE

Q9SD82 Replication protein A 70 kDa DNA-binding subunit B1.5e-1032.41Show/hide
Query:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS
        +  L  +Q  W+  + V  K + + +K+ +GE   +    + D+EG  +Q T+FN    KF D+ E GK Y I  GS+K  + +++ V +  E++L+++S
Subjt:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS

Query:  EVEEIEGE
        EVEE   E
Subjt:  EVEEIEGE

Q9SKI4 Replication protein A 70 kDa DNA-binding subunit A3.2e-0832.04Show/hide
Query:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS
        IA L  +Q  W+    V  K   +++ + KG+   +  F ++D +G  +++T FN L+++F D  E GK Y I  GS+KP    + ++ +  EI L  +S
Subjt:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS

Query:  EVE
         VE
Subjt:  EVE

Arabidopsis top hitse value%identityAlignment
AT2G06510.1 replication protein A 1A2.3e-0932.04Show/hide
Query:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS
        IA L  +Q  W+    V  K   +++ + KG+   +  F ++D +G  +++T FN L+++F D  E GK Y I  GS+KP    + ++ +  EI L  +S
Subjt:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS

Query:  EVE
         VE
Subjt:  EVE

AT2G06510.2 replication protein A 1A2.3e-0932.04Show/hide
Query:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS
        IA L  +Q  W+    V  K   +++ + KG+   +  F ++D +G  +++T FN L+++F D  E GK Y I  GS+KP    + ++ +  EI L  +S
Subjt:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS

Query:  EVE
         VE
Subjt:  EVE

AT5G08020.1 RPA70-kDa subunit B1.1e-1132.41Show/hide
Query:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS
        +  L  +Q  W+  + V  K + + +K+ +GE   +    + D+EG  +Q T+FN    KF D+ E GK Y I  GS+K  + +++ V +  E++L+++S
Subjt:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS

Query:  EVEEIEGE
        EVEE   E
Subjt:  EVEEIEGE

AT5G45400.1 Replication factor-A protein 1-related8.7e-0927.78Show/hide
Query:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS
        IA L  +Q  W+  + V  K   ++F + +GE   +  F ++D +G  +++T FN+ +++F DK+  G  Y I  G++KP    + ++ +  EI L  +S
Subjt:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS

Query:  EVEEIEGE
         ++  E +
Subjt:  EVEEIEGE

AT5G61000.1 Replication factor-A protein 1-related1.1e-1131.48Show/hide
Query:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS
        +  L  +Q  W+  + V  K + + +K+ +GE   +    + D+EG  +Q T+FN+   KF D+ + GK Y I  GS+K  + +++ V +  E++L+++S
Subjt:  IAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSS

Query:  EVEEIEGE
        EVEE   E
Subjt:  EVEEIEGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGAGATGACAATAGCTGAACTAAAGTCGTTTCAAAGAGGATGGTCAACAACCATTACTGTTGTTAGAAAATTTCTGAAGCAACAATTCAAAAGTCGAAAGGGAGA
ACCACTCAACATACAGAAGTTCGTTGTTATTGATAAAGAGGGTGAAAGCGTTCAAATAACCTTATTTAACGAGCTGATTGAGAAATTCGCTGACAAATTAGAAAGGGGAA
AAACCTATCGAATAATTGATGGAAGTATCAAACCAATCGATACAAGATATCAAAATGTTAATGACAGAATTGAGATATCACTGTCACAATCCAGTGAAGTAGAAGAAATT
GAGGGGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACAGAGATGACAATAGCTGAACTAAAGTCGTTTCAAAGAGGATGGTCAACAACCATTACTGTTGTTAGAAAATTTCTGAAGCAACAATTCAAAAGTCGAAAGGGAGA
ACCACTCAACATACAGAAGTTCGTTGTTATTGATAAAGAGGGTGAAAGCGTTCAAATAACCTTATTTAACGAGCTGATTGAGAAATTCGCTGACAAATTAGAAAGGGGAA
AAACCTATCGAATAATTGATGGAAGTATCAAACCAATCGATACAAGATATCAAAATGTTAATGACAGAATTGAGATATCACTGTCACAATCCAGTGAAGTAGAAGAAATT
GAGGGGGAATGA
Protein sequenceShow/hide protein sequence
MTEMTIAELKSFQRGWSTTITVVRKFLKQQFKSRKGEPLNIQKFVVIDKEGESVQITLFNELIEKFADKLERGKTYRIIDGSIKPIDTRYQNVNDRIEISLSQSSEVEEI
EGE