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Lcy06g007120 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g007120
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:6939284..6939993
RNA-Seq ExpressionLcy06g007120
SyntenyLcy06g007120
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
SPT15432.1 unnamed protein product [Triticum aestivum]9.9e-0936.59Show/hide
Query:  YNYDYILSQGLGWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGS
        ++YD  L   +G V+RD     I +G + I  C+  L++EA A+  G++L  +SS G   L++ SD L++++ +  +      +  +++D   LA E  S
Subjt:  YNYDYILSQGLGWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGS

Query:  VSFEHCPYEMNVVAHSLARVARS
        + FE CP E NVVAH LA VARS
Subjt:  VSFEHCPYEMNVVAHSLARVARS

XP_010696345.1 PREDICTED: uncharacterized protein LOC104908875 [Beta vulgaris subsp. vulgaris]3.5e-0625.96Show/hide
Query:  DYWSWWLNHSSSEELRMAAIIMWQVWTLRNQILHKFR---------HFI-YNYDYIL---------------------------------------SQGL
        D + W++ H S +ELR+   + W  W  RN+ + + +         HF+   +DY L                                         GL
Subjt:  DYWSWWLNHSSSEELRMAAIIMWQVWTLRNQILHKFR---------HFI-YNYDYIL---------------------------------------SQGL

Query:  GWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHCPYEMN
        G VVRDS    +  G+++ +  W +   EA A L  ++L+H    G   +++E D L +I  LK + V  S   ++  DI+ +      +SF H     N
Subjt:  GWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHCPYEMN

Query:  VVAHSLAR
        VVAH LAR
Subjt:  VVAHSLAR

XP_021748567.1 uncharacterized protein LOC110714367 [Chenopodium quinoa]1.2e-0632.43Show/hide
Query:  GLGWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHCPYE
        G G + RD     + + ++++   W +L  E KA L G+K        N++L  ESD LQ++  LK  A   S+ + +LEDI +L+S   S+ + H   +
Subjt:  GLGWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHCPYE

Query:  MNVVAHSLARV
         N++ H LAR+
Subjt:  MNVVAHSLARV

XP_021753633.1 uncharacterized protein LOC110719026 [Chenopodium quinoa]1.7e-0839.45Show/hide
Query:  LSQGLGWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHC
        L+ GLG VVRD     +  G+Q+I   W +   EAKAI  G+++  A+  G   L++ESD LQ+IQ LK +  DLSE + +++DI  L S   +V + + 
Subjt:  LSQGLGWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHC

Query:  PYEMNVVAH
            N VAH
Subjt:  PYEMNVVAH

XP_030941808.1 uncharacterized protein LOC115966790 [Quercus lobata]1.6e-0637.39Show/hide
Query:  SQGLGWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHCP
        S G+G V+RD     +    +KI   +SI ALEA A +  ++L  A   G    ++E D    I  L G  V+ +E  NL E+   LAS+ G VSF H  
Subjt:  SQGLGWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHCP

Query:  YEMNVVAHSLARVAR
         + N  AH+ AR AR
Subjt:  YEMNVVAHSLARVAR

TrEMBL top hitse value%identityAlignment
A0A151TEP3 Putative ribonuclease H protein At1g65750 family1.4e-0537.96Show/hide
Query:  GWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHCPYEMN
        G +VRDS    I    +K+  C S+L  E  AIL+G++L+H  S G+ +L IESD L+ I  LK       + + L++ I+ LA+   +VS+ H   E N
Subjt:  GWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHCPYEMN

Query:  VVAHSLAR
        +VA  LA+
Subjt:  VVAHSLAR

A0A1R3GTB5 Reverse transcriptase3.2e-0530.56Show/hide
Query:  LGWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHCPYEM
        LG V+RD   S I  G+ ++S+  +++  E  AIL G+++  A   G++ L++ESD  Q I+ ++     L    +++ DI   +++   +SF+H   E 
Subjt:  LGWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHCPYEM

Query:  NVVAHSLA
        NV+ H +A
Subjt:  NVVAHSLA

A0A2P6QAC1 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein2.5e-0532.3Show/hide
Query:  LNHSSSEELRMAAIIMWQVWTLRNQILHKFRHF--IYNYDYILSQGLGWVVRDSGESPICTGLQKISK----CWSILALEAKAILEGMKLLHASSDGNLV
        L+  +S ++    + +W VWT RN+I+     F  ++   Y L  G+G VVRD     + TG+  I+K      S + +EA+A   G  LL     G   
Subjt:  LNHSSSEELRMAAIIMWQVWTLRNQILHKFRHF--IYNYDYILSQGLGWVVRDSGESPICTGLQKISK----CWSILALEAKAILEGMKLLHASSDGNLV

Query:  LMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHCPYEMNVVAHSLARVA
        ++IESD   +I  LK E  + SE + + +D     S+  S+   H   E N VAH LA +A
Subjt:  LMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHCPYEMNVVAHSLARVA

A0A7H4L9Z4 Genome assembly, chromosome: II4.8e-0936.59Show/hide
Query:  YNYDYILSQGLGWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGS
        ++YD  L   +G V+RD     I +G + I  C+  L++EA A+  G++L  +SS G   L++ SD L++++ +  +      +  +++D   LA E  S
Subjt:  YNYDYILSQGLGWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGS

Query:  VSFEHCPYEMNVVAHSLARVARS
        + FE CP E NVVAH LA VARS
Subjt:  VSFEHCPYEMNVVAHSLARVARS

M5WQH4 Uncharacterized protein (Fragment)2.5e-0535.71Show/hide
Query:  GLGWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHCPYE
        G+G VVRDS    +     ++   +S L +EA A  EG  +L    D N V+  ESD LQI+  ++  +VD S    ++ED  AL +++    F H    
Subjt:  GLGWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHCPYE

Query:  MNVVAHSLARVA
         N  AH LAR A
Subjt:  MNVVAHSLARVA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTACTGGAGCTGGTGGCTAAATCACTCAAGTTCCGAAGAGCTAAGGATGGCAGCGATTATAATGTGGCAAGTTTGGACACTCAGGAACCAAATTTTGCACAAGTT
TAGGCATTTCATCTACAACTACGACTACATCCTCAGCCAGGGGCTAGGTTGGGTAGTGCGCGACTCCGGCGAGTCTCCGATCTGCACGGGCCTGCAAAAGATTTCAAAAT
GCTGGTCAATTCTAGCATTGGAAGCTAAAGCCATCCTTGAAGGGATGAAATTGTTGCATGCCAGTTCCGATGGTAACCTGGTGTTGATGATCGAGTCTGACATGCTTCAG
ATTATCCAATGCTTGAAAGGTGAAGCCGTAGACCTCTCGGAAAACAACAATCTTCTGGAAGACATAGCCGCTTTGGCCTCTGAATTGGGGAGTGTTTCCTTCGAGCATTG
CCCCTACGAGATGAATGTTGTCGCCCATTCTCTCGCCCGTGTAGCTAGAAGTGATGCATCCTCTGCAGACAGAACCGCGAGACAGCCCAACACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACTACTGGAGCTGGTGGCTAAATCACTCAAGTTCCGAAGAGCTAAGGATGGCAGCGATTATAATGTGGCAAGTTTGGACACTCAGGAACCAAATTTTGCACAAGTT
TAGGCATTTCATCTACAACTACGACTACATCCTCAGCCAGGGGCTAGGTTGGGTAGTGCGCGACTCCGGCGAGTCTCCGATCTGCACGGGCCTGCAAAAGATTTCAAAAT
GCTGGTCAATTCTAGCATTGGAAGCTAAAGCCATCCTTGAAGGGATGAAATTGTTGCATGCCAGTTCCGATGGTAACCTGGTGTTGATGATCGAGTCTGACATGCTTCAG
ATTATCCAATGCTTGAAAGGTGAAGCCGTAGACCTCTCGGAAAACAACAATCTTCTGGAAGACATAGCCGCTTTGGCCTCTGAATTGGGGAGTGTTTCCTTCGAGCATTG
CCCCTACGAGATGAATGTTGTCGCCCATTCTCTCGCCCGTGTAGCTAGAAGTGATGCATCCTCTGCAGACAGAACCGCGAGACAGCCCAACACCTAA
Protein sequenceShow/hide protein sequence
MDYWSWWLNHSSSEELRMAAIIMWQVWTLRNQILHKFRHFIYNYDYILSQGLGWVVRDSGESPICTGLQKISKCWSILALEAKAILEGMKLLHASSDGNLVLMIESDMLQ
IIQCLKGEAVDLSENNNLLEDIAALASELGSVSFEHCPYEMNVVAHSLARVARSDASSADRTARQPNT