; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy06g009070 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g009070
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionSmall nuclear ribonucleoprotein family protein
Genome locationChr06:9163845..9166131
RNA-Seq ExpressionLcy06g009070
SyntenyLcy06g009070
Gene Ontology termsGO:0031417 - NatC complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034110 - LSM domain containing 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011649337.1 uncharacterized protein LOC101206200 [Cucumis sativus]1.0e-5193.75Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGG +VQ GSNVESNP+SLD IGKVRKLLFRRMLIGIKDGRFFLG F+CIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_022140017.1 uncharacterized protein LOC111010777 [Momordica charantia]6.6e-5194.64Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES GP VQVGSNVESNP SLD I KVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STI EQLALLSV
Subjt:  STIDEQLALLSV

XP_022927243.1 uncharacterized protein LOC111434149 [Cucurbita moschata]1.2e-5293.75Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGG +VQVG NVESNPDSLDR+GKVRKLLFRRMLIGIKDGRFFLG+F+C+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_023001494.1 uncharacterized protein LOC111495614 [Cucurbita maxima]1.0e-5191.96Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        M+QESGG +VQVGSNVESNPDSLDR+GKVRKLLFRRML+GIKDGRFFLG+F+C+DKQGNIILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_023520042.1 uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]3.1e-5394.64Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGG +VQVGSNVESNPDSLDR+GKVRKLLFRRMLIGIKDGRFFLG+F+C+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

TrEMBL top hitse value%identityAlignment
A0A0A0LSZ5 Sm domain-containing protein4.9e-5293.75Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGG +VQ GSNVESNP+SLD IGKVRKLLFRRMLIGIKDGRFFLG F+CIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A5D3DAS2 Small nuclear ribonucleoprotein family protein isoform 23.5e-5091.96Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGG +VQ GSN ESN +SLD IGKVRKLLFRRMLIGIKDGRFFLG F+CIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1CFL8 uncharacterized protein LOC1110107773.2e-5194.64Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES GP VQVGSNVESNP SLD I KVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STI EQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1EKG3 uncharacterized protein LOC1114341495.8e-5393.75Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGG +VQVG NVESNPDSLDR+GKVRKLLFRRMLIGIKDGRFFLG+F+C+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1KMW6 uncharacterized protein LOC1114956144.9e-5291.96Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        M+QESGG +VQVGSNVESNPDSLDR+GKVRKLLFRRML+GIKDGRFFLG+F+C+DKQGNIILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

SwissProt top hitse value%identityAlignment
P63162 Small nuclear ribonucleoprotein-associated protein N8.7e-0638.27Show/hide
Query:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

P63163 Small nuclear ribonucleoprotein-associated protein N8.7e-0638.27Show/hide
Query:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Q17QN3 Small nuclear ribonucleoprotein-associated protein N8.7e-0638.27Show/hide
Query:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Q55A45 Small nuclear ribonucleoprotein-associated protein B3.9e-0632.95Show/hide
Query:  LDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL
        + +  K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG+ILI     VS  V++   E+  L
Subjt:  LDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL

Q60HD3 Small nuclear ribonucleoprotein-associated protein N8.7e-0638.27Show/hide
Query:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Arabidopsis top hitse value%identityAlignment
AT4G18372.1 Small nuclear ribonucleoprotein family protein3.0e-3867.86Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQ +      V S  E +    D I ++RKLLFR+ML+GIKDGRFFLG FHCIDKQGNIILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
         +IDEQL+L+ +
Subjt:  STIDEQLALLSV

AT4G20440.2 small nuclear ribonucleoprotein associated protein B1.7e-0427.38Show/hide
Query:  SLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD
        S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       ++ +    ++R LGL+L+     +S  V+
Subjt:  SLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD

AT4G20440.3 small nuclear ribonucleoprotein associated protein B1.7e-0427.38Show/hide
Query:  SLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD
        S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       ++ +    ++R LGL+L+     +S  V+
Subjt:  SLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACAAGAATCAGGAGGACCCGTGGTTCAGGTTGGAAGCAATGTTGAGTCTAACCCAGACAGTTTAGATCGCATAGGAAAGGTGAGAAAGCTGCTGTTCCGTCGAAT
GCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCACCTTTCACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTA
GCTCGCCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATCCCCAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGCTA
TCAGTCTAG
mRNA sequenceShow/hide mRNA sequence
CACCGTCATCCACGAAGCGAAGCCCAAAATTGCAATCGCCCGCCAGCCAAGTTCGCCTCTGCTCTGCCGGCTGCACCGTCTCTCTCTCTCTCACTGCTGGGATCAACTGA
GGTAACCATACATGGAACAAGAATCAGGAGGACCCGTGGTTCAGGTTGGAAGCAATGTTGAGTCTAACCCAGACAGTTTAGATCGCATAGGAAAGGTGAGAAAGCTGCTG
TTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCACCTTTCACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAG
CACTCGGCGTAGCTCGCCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATCCCCAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAAT
TGGCGCTGCTATCAGTCTAGCAAATAAGATCAAGCCTGAGGTTATAAGAGGGGAGGGAAAAAAAATCTGCATACTTGTTTGAAGAGAATGTTATGATTGTTTCTATTGCT
ACAGGAAAAATACTAAAATAATATGTTATTTTTAGTGGAAATATGGGATTAGAATATACGATTTTTTTCCCTTGATAGATTATCGATAATCAGAGCATATTCTCATTTTC
TTTATTAGTTGAAG
Protein sequenceShow/hide protein sequence
MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL
SV