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Lcy06g010100 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g010100
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:10791434..10792261
RNA-Seq ExpressionLcy06g010100
SyntenyLcy06g010100
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021839114.1 uncharacterized protein LOC110778879 [Spinacia oleracea]1.2e-1432.45Show/hide
Query:  SRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATVGLRIAVETATRPFVLETNSTRVFKFLQRDMEEM
        +R   +W PP     KVN D    L+ G  G+G+V  D  G+VVF ++         +  E  AA V +++A E   +  VLE ++  + + L+   +  
Subjt:  SRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATVGLRIAVETATRPFVLETNSTRVFKFLQRDMEEM

Query:  SELRLLVEDVVRGVPVGWFIGGSFTYREGNRVAHRLARLAMEDRCDRVWME
        S ++L+VED    +P    I  SF +RE + VAHRLA+ A+ +  D VW++
Subjt:  SELRLLVEDVVRGVPVGWFIGGSFTYREGNRVAHRLARLAMEDRCDRVWME

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]6.1e-2238.1Show/hide
Query:  IANLADWVVGYLNAFRDSNRRGMD---LLVGRPSRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATV
        + N+ DWV  YL  ++ S + G     LL GR  R V  W PP    FKVNVD  F   +   G+ ++  DS   V+  A  F  +V D   AE LAA  
Subjt:  IANLADWVVGYLNAFRDSNRRGMD---LLVGRPSRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATV

Query:  GLRIAVETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPVGWFIGGSFTY--REGNRVAHRLARLAMEDRCDRVWMERAL
        G+ +A+E    PF +ET+S++VF  L+ D E+ SE+ +L    +R +     IGG F++  REGN  AH LAR+ M      VW+E  L
Subjt:  GLRIAVETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPVGWFIGGSFTY--REGNRVAHRLARLAMEDRCDRVWMERAL

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]9.1e-1832.98Show/hide
Query:  QKRVSIANLADWVVGYLNAFRDSN------RRGMDLLVGRPSRV-----VCRWAPPEFDGFKVNVDPTFCLESGMTGVGV-VCHDSWGRVVFPATAFHEN
        ++RV   +LA WV  Y+  F+ +N       + +     + S++        W P E   FK+  D +F       G+GV +  D  G+V+  AT + E+
Subjt:  QKRVSIANLADWVVGYLNAFRDSN------RRGMDLLVGRPSRV-----VCRWAPPEFDGFKVNVDPTFCLESGMTGVGV-VCHDSWGRVVFPATAFHEN

Query:  VRDADYAEGLAATVGLRIAVETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPVGWFIGGSFTYREGNRVAHRLARLAMEDR
        V   D AE LAA  GLR+A+ET   P +LET+S R++    RD E +S+   ++E V   +     +  SFT R GN +AH LAR A++ +
Subjt:  VRDADYAEGLAATVGLRIAVETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPVGWFIGGSFTYREGNRVAHRLARLAMEDR

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.7e-1931.46Show/hide
Query:  LADWVVGYLNAFRDSNRRGMDLLVGRPSRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATVGLRIAV
        L +W   Y+  FR++N       V   + V+  W PP+   +K+N D +F       G+G++  +  G+V+  AT + EN++  D AE + A  GL++A 
Subjt:  LADWVVGYLNAFRDSNRRGMDLLVGRPSRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATVGLRIAV

Query:  ETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPVGWFIGGSFTYREGNRVAHRLARLAMEDRCDRVWME
        +    P +LET+S+R+F    +  E++SE   +V               +F  REGN+ AH LAR A+  R   +WME
Subjt:  ETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPVGWFIGGSFTYREGNRVAHRLARLAMEDRCDRVWME

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]9.7e-2035.87Show/hide
Query:  SIANLADWVVGYLNAFRDSNRRGMD-LLVGRPSRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATVG
        S+++L  W   YL  ++ + R     L+V RP RV   W PP     KVNVD  F  ES + GVGV+  DS G V   A        D D+ EG A   G
Subjt:  SIANLADWVVGYLNAFRDSNRRGMD-LLVGRPSRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATVG

Query:  LRIAVETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPV-GWFIGGSFTYREGNRVAHRLARLAMEDRCDRVWME
        + +AVE     F +ET+S R+F  L  D  + SE+ +L   +   +      +  SFT+R GN  AH LA+LA+     ++W+E
Subjt:  LRIAVETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPV-GWFIGGSFTYREGNRVAHRLARLAMEDRCDRVWME

TrEMBL top hitse value%identityAlignment
A0A3L6T7U7 RNase H domain-containing protein2.9e-1431.79Show/hide
Query:  PSRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATVGLRIAVETATRPFVLETNSTRVFKFLQRDMEE
        PSR   RW  P+    K+NVD  F  +SG+TG+G+V  +  G V+  A        DA+ AE +A   GL++A +    P VLET+   V K ++   + 
Subjt:  PSRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATVGLRIAVETATRPFVLETNSTRVFKFLQRDMEE

Query:  MSELRLLVEDVVRGVPVGWFIGGSFTYREGNRVAHRLARLAMEDRCDRVWM
        + +L   +++VV  +   + +      R+ NRVAH L + A ++   +VW+
Subjt:  MSELRLLVEDVVRGVPVGWFIGGSFTYREGNRVAHRLARLAMEDRCDRVWM

A0A6J1C467 uncharacterized protein LOC1110077752.9e-2238.1Show/hide
Query:  IANLADWVVGYLNAFRDSNRRGMD---LLVGRPSRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATV
        + N+ DWV  YL  ++ S + G     LL GR  R V  W PP    FKVNVD  F   +   G+ ++  DS   V+  A  F  +V D   AE LAA  
Subjt:  IANLADWVVGYLNAFRDSNRRGMD---LLVGRPSRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATV

Query:  GLRIAVETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPVGWFIGGSFTY--REGNRVAHRLARLAMEDRCDRVWMERAL
        G+ +A+E    PF +ET+S++VF  L+ D E+ SE+ +L    +R +     IGG F++  REGN  AH LAR+ M      VW+E  L
Subjt:  GLRIAVETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPVGWFIGGSFTY--REGNRVAHRLARLAMEDRCDRVWMERAL

A0A6J1CDQ4 uncharacterized protein LOC1110105334.4e-1832.98Show/hide
Query:  QKRVSIANLADWVVGYLNAFRDSN------RRGMDLLVGRPSRV-----VCRWAPPEFDGFKVNVDPTFCLESGMTGVGV-VCHDSWGRVVFPATAFHEN
        ++RV   +LA WV  Y+  F+ +N       + +     + S++        W P E   FK+  D +F       G+GV +  D  G+V+  AT + E+
Subjt:  QKRVSIANLADWVVGYLNAFRDSN------RRGMDLLVGRPSRV-----VCRWAPPEFDGFKVNVDPTFCLESGMTGVGV-VCHDSWGRVVFPATAFHEN

Query:  VRDADYAEGLAATVGLRIAVETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPVGWFIGGSFTYREGNRVAHRLARLAMEDR
        V   D AE LAA  GLR+A+ET   P +LET+S R++    RD E +S+   ++E V   +     +  SFT R GN +AH LAR A++ +
Subjt:  VRDADYAEGLAATVGLRIAVETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPVGWFIGGSFTYREGNRVAHRLARLAMEDR

A0A6J1CIF1 uncharacterized protein LOC1110112378.0e-2031.46Show/hide
Query:  LADWVVGYLNAFRDSNRRGMDLLVGRPSRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATVGLRIAV
        L +W   Y+  FR++N       V   + V+  W PP+   +K+N D +F       G+G++  +  G+V+  AT + EN++  D AE + A  GL++A 
Subjt:  LADWVVGYLNAFRDSNRRGMDLLVGRPSRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATVGLRIAV

Query:  ETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPVGWFIGGSFTYREGNRVAHRLARLAMEDRCDRVWME
        +    P +LET+S+R+F    +  E++SE   +V               +F  REGN+ AH LAR A+  R   +WME
Subjt:  ETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPVGWFIGGSFTYREGNRVAHRLARLAMEDRCDRVWME

A0A6J1DBJ7 uncharacterized protein LOC1110189734.7e-2035.87Show/hide
Query:  SIANLADWVVGYLNAFRDSNRRGMD-LLVGRPSRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATVG
        S+++L  W   YL  ++ + R     L+V RP RV   W PP     KVNVD  F  ES + GVGV+  DS G V   A        D D+ EG A   G
Subjt:  SIANLADWVVGYLNAFRDSNRRGMD-LLVGRPSRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATVG

Query:  LRIAVETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPV-GWFIGGSFTYREGNRVAHRLARLAMEDRCDRVWME
        + +AVE     F +ET+S R+F  L  D  + SE+ +L   +   +      +  SFT+R GN  AH LA+LA+     ++W+E
Subjt:  LRIAVETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPV-GWFIGGSFTYREGNRVAHRLARLAMEDRCDRVWME

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAGCAGAAGAGGGTCTCGATAGCAAATCTGGCAGATTGGGTTGTTGGGTATTTGAATGCATTTCGTGATTCGAATAGGAGGGGGATGGACCTGTTGGTGGGAAG
ACCAAGTCGGGTTGTTTGCAGGTGGGCGCCGCCGGAGTTTGATGGGTTTAAGGTGAACGTTGATCCGACCTTTTGTCTGGAGAGCGGAATGACGGGTGTAGGTGTGGTAT
GCCATGATTCTTGGGGGCGGGTGGTCTTCCCAGCTACTGCTTTCCACGAGAATGTTAGAGATGCTGATTATGCAGAAGGATTGGCGGCTACTGTCGGTTTGAGGATTGCT
GTAGAAACGGCTACTCGACCTTTTGTGCTGGAGACAAATTCTACCCGAGTGTTCAAGTTCCTACAGCGTGACATGGAGGAGATGTCAGAGTTGAGACTGCTGGTGGAGGA
TGTGGTGAGAGGCGTTCCAGTGGGGTGGTTTATTGGTGGTAGCTTCACGTACAGGGAAGGCAACCGTGTTGCTCACCGTTTGGCCAGGCTGGCGATGGAGGATAGGTGTG
ATCGAGTATGGATGGAAAGGGCCCTTCATGTGTTTTGGGCTTGTTGGCAGAAGATGAAGTGCACAAGTTTTCTCAGACTACTTCTTGAGGACTTATATGTTTTAGGTTGG
GGTGGGAGATTGTGTAGGCTAATGGGCCCTGGGTTTGAGTCCGGTTGCACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAGCAGAAGAGGGTCTCGATAGCAAATCTGGCAGATTGGGTTGTTGGGTATTTGAATGCATTTCGTGATTCGAATAGGAGGGGGATGGACCTGTTGGTGGGAAG
ACCAAGTCGGGTTGTTTGCAGGTGGGCGCCGCCGGAGTTTGATGGGTTTAAGGTGAACGTTGATCCGACCTTTTGTCTGGAGAGCGGAATGACGGGTGTAGGTGTGGTAT
GCCATGATTCTTGGGGGCGGGTGGTCTTCCCAGCTACTGCTTTCCACGAGAATGTTAGAGATGCTGATTATGCAGAAGGATTGGCGGCTACTGTCGGTTTGAGGATTGCT
GTAGAAACGGCTACTCGACCTTTTGTGCTGGAGACAAATTCTACCCGAGTGTTCAAGTTCCTACAGCGTGACATGGAGGAGATGTCAGAGTTGAGACTGCTGGTGGAGGA
TGTGGTGAGAGGCGTTCCAGTGGGGTGGTTTATTGGTGGTAGCTTCACGTACAGGGAAGGCAACCGTGTTGCTCACCGTTTGGCCAGGCTGGCGATGGAGGATAGGTGTG
ATCGAGTATGGATGGAAAGGGCCCTTCATGTGTTTTGGGCTTGTTGGCAGAAGATGAAGTGCACAAGTTTTCTCAGACTACTTCTTGAGGACTTATATGTTTTAGGTTGG
GGTGGGAGATTGTGTAGGCTAATGGGCCCTGGGTTTGAGTCCGGTTGCACCTGA
Protein sequenceShow/hide protein sequence
MRQQKRVSIANLADWVVGYLNAFRDSNRRGMDLLVGRPSRVVCRWAPPEFDGFKVNVDPTFCLESGMTGVGVVCHDSWGRVVFPATAFHENVRDADYAEGLAATVGLRIA
VETATRPFVLETNSTRVFKFLQRDMEEMSELRLLVEDVVRGVPVGWFIGGSFTYREGNRVAHRLARLAMEDRCDRVWMERALHVFWACWQKMKCTSFLRLLLEDLYVLGW
GGRLCRLMGPGFESGCT