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Lcy06g010170 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g010170
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:10904819..10905688
RNA-Seq ExpressionLcy06g010170
SyntenyLcy06g010170
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO88292.1 reverse transcriptase [Corchorus capsularis]2.9e-0740.24Show/hide
Query:  QDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLVFSLLFDFFMEPQIAELRGILEGMRLSLRWGCSKLLVESD
        Q  W+PPP G  K+NS ASC  +   +GLG++ RN +GE ++  S    F  +P  AE+  IL G  L+L +G    + ESD
Subjt:  QDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLVFSLLFDFFMEPQIAELRGILEGMRLSLRWGCSKLLVESD

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]2.6e-0832.03Show/hide
Query:  HGEKIPPIHIRSKWIEEYLRTFLQANSRNRPPSTDDRHQQSTQSIHQDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLVFSLLFDFFMEP
        HG  +    +R  WI  Y + + QA    R        QQS+       W PP +   K+NS A+C  +  S+GLG++ R+  G  ++  S+     + P
Subjt:  HGEKIPPIHIRSKWIEEYLRTFLQANSRNRPPSTDDRHQQSTQSIHQDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLVFSLLFDFFMEP

Query:  QIAELRGILEGMRLSLRWGCSKLLVESD
          AE+RGILE ++L+     ++L+VESD
Subjt:  QIAELRGILEGMRLSLRWGCSKLLVESD

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]8.4e-0730Show/hide
Query:  GALDRQKKKIHGEKIPPIHIRSKWIEEYLRTFLQANSRNRPPSTDDRHQQSTQSIHQDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLV-
        G  + +   IHG+++ P+  + +W+  +L +  QA   N  P T   H+   Q      W P      K+N+ A+C  +  S G    C  +D  C LV 
Subjt:  GALDRQKKKIHGEKIPPIHIRSKWIEEYLRTFLQANSRNRPPSTDDRHQQSTQSIHQDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLV-

Query:  -FSLLFDFFMEPQIAELRGILEGMRLSLRWGCSKLLVESD
          S+   F + P +AE+R ILEG++ +     + L VESD
Subjt:  -FSLLFDFFMEPQIAELRGILEGMRLSLRWGCSKLLVESD

XP_042950144.1 uncharacterized protein LOC122282259 [Carya illinoinensis]2.2e-0741.77Show/hide
Query:  WSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLVFSLLFDFFMEPQIAELRGILEGMRLSLRWGCSKLLVESD
        WSPPPEGF K+N   +       +G+G + R+  GE +L  S +  +  EP+  EL  IL G++L ++ G SKL+VESD
Subjt:  WSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLVFSLLFDFFMEPQIAELRGILEGMRLSLRWGCSKLLVESD

XP_042965942.1 uncharacterized protein LOC122299620 [Carya illinoinensis]2.2e-0741.77Show/hide
Query:  WSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLVFSLLFDFFMEPQIAELRGILEGMRLSLRWGCSKLLVESD
        WSPPPEGF K+N   +       +G+G + R+  GE +L  S +  +  EP+  EL  IL G++L ++ G SKL+VESD
Subjt:  WSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLVFSLLFDFFMEPQIAELRGILEGMRLSLRWGCSKLLVESD

TrEMBL top hitse value%identityAlignment
A0A1R3J0D7 Reverse transcriptase1.4e-0740.24Show/hide
Query:  QDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLVFSLLFDFFMEPQIAELRGILEGMRLSLRWGCSKLLVESD
        Q  W+PPP G  K+NS ASC  +   +GLG++ RN +GE ++  S    F  +P  AE+  IL G  L+L +G    + ESD
Subjt:  QDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLVFSLLFDFFMEPQIAELRGILEGMRLSLRWGCSKLLVESD

A0A5C7GQX3 RNase H domain-containing protein5.3e-0729.92Show/hide
Query:  GEKIPPIHIRSKWIEEYLRTFLQANSRNRPPSTDDRHQQSTQSIHQDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLVFSLLFDFFMEPQ
        GE + P +   +W  ++L+ F ++++  +P    DR            W  PP+G +K+N+ A+ ++   S+G+G++ RN  G+ ML     F     P 
Subjt:  GEKIPPIHIRSKWIEEYLRTFLQANSRNRPPSTDDRHQQSTQSIHQDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLVFSLLFDFFMEPQ

Query:  IAELRGILEGMRLSLRWGCSKLLVESD
        IAE   +LEG+RL+   G    ++ESD
Subjt:  IAELRGILEGMRLSLRWGCSKLLVESD

A0A6J1BQ49 uncharacterized protein LOC1110047861.3e-0832.03Show/hide
Query:  HGEKIPPIHIRSKWIEEYLRTFLQANSRNRPPSTDDRHQQSTQSIHQDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLVFSLLFDFFMEP
        HG  +    +R  WI  Y + + QA    R        QQS+       W PP +   K+NS A+C  +  S+GLG++ R+  G  ++  S+     + P
Subjt:  HGEKIPPIHIRSKWIEEYLRTFLQANSRNRPPSTDDRHQQSTQSIHQDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECMLVFSLLFDFFMEP

Query:  QIAELRGILEGMRLSLRWGCSKLLVESD
          AE+RGILE ++L+     ++L+VESD
Subjt:  QIAELRGILEGMRLSLRWGCSKLLVESD

B8BN96 Reverse transcriptase domain-containing protein2.0e-0625.71Show/hide
Query:  IHGEKIPPIHIRSKWIEEYLRTFLQANSRNRPPSTDDRHQQSTQSI-----------HQDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECML
        IHG+  PP     ++I+ Y+    Q     +      +H   T  +           HQ  W  P +G+ K+N   S   S    GLG++ RN  G+ + 
Subjt:  IHGEKIPPIHIRSKWIEEYLRTFLQANSRNRPPSTDDRHQQSTQSI-----------HQDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECML

Query:  VFSLLFDFFMEPQIAELRGILEGMRLSLRWGCSKLLVESD
              +    P  +ELR  +EG++L++ W    + VE+D
Subjt:  VFSLLFDFFMEPQIAELRGILEGMRLSLRWGCSKLLVESD

Q0IPZ9 Os12g0156200 protein2.0e-0625.71Show/hide
Query:  IHGEKIPPIHIRSKWIEEYLRTFLQANSRNRPPSTDDRHQQSTQSI-----------HQDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECML
        IHG+  PP     ++I+ Y+    Q     +      +H   T  +           HQ  W  P +G+ K+N   S   S    GLG++ RN  G+ + 
Subjt:  IHGEKIPPIHIRSKWIEEYLRTFLQANSRNRPPSTDDRHQQSTQSI-----------HQDSWSPPPEGFWKMNSVASCSISPPSSGLGILCRNKDGECML

Query:  VFSLLFDFFMEPQIAELRGILEGMRLSLRWGCSKLLVESD
              +    P  +ELR  +EG++L++ W    + VE+D
Subjt:  VFSLLFDFFMEPQIAELRGILEGMRLSLRWGCSKLLVESD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAGAATCAATTCCTGAAGCTCAAAAGAAGTTCTAGGGTGGATAGCAACCACATGCTGGGCGCTTTGGATCGACAGAAAAAAAAAATTCATGGAGAAAAAATTCC
TCCTATTCATATTAGAAGCAAATGGATTGAAGAGTACCTAAGAACTTTTCTTCAAGCTAATTCGAGGAATCGACCGCCCAGTACGGATGATCGCCACCAGCAATCAACTC
AATCGATCCATCAAGATTCATGGTCCCCGCCTCCTGAGGGGTTCTGGAAAATGAATTCAGTTGCTTCGTGTTCCATAAGCCCTCCATCGTCTGGTCTGGGAATCCTCTGT
AGAAATAAGGATGGTGAATGCATGTTAGTTTTTTCTCTCTTGTTCGACTTTTTCATGGAGCCTCAGATTGCTGAATTAAGGGGTATTTTGGAAGGTATGAGATTATCGCT
TAGATGGGGTTGCTCGAAGCTACTAGTTGAATCTGACATTGGCAATTAA
mRNA sequenceShow/hide mRNA sequence
GAAACTTAAAATTGATGGAATTTCTGCTAGTAACAGCCCTATGAATAATGTCTGGAAAAACCTATGGAAGCTTAATATTCCAAGTAAAATTTAGCATTTTGTATGGAAAG
CCTCGAATAATTCCTTACCTAATAAAGCTAATCTAATTCAGAGAGGAATAAATATTTCCCCGGTTTGTCCCATTTGTAATGCTCAAATAGAAACTTCAGATCACTGTCTA
TTTCTATGTCCCCGTGCAAAAGATATGTGGAATCTAATCTATGAAAATGTTTTTTTGGAGGAGGATTTCCATGAGAGCTTTAAAGACAGATGGATCAGAATCAATTCCTG
AAGCTCAAAAGAAGTTCTAGGGTGGATAGCAACCACATGCTGGGCGCTTTGGATCGACAGAAAAAAAAAATTCATGGAGAAAAAATTCCTCCTATTCATATTAGAAGCAA
ATGGATTGAAGAGTACCTAAGAACTTTTCTTCAAGCTAATTCGAGGAATCGACCGCCCAGTACGGATGATCGCCACCAGCAATCAACTCAATCGATCCATCAAGATTCAT
GGTCCCCGCCTCCTGAGGGGTTCTGGAAAATGAATTCAGTTGCTTCGTGTTCCATAAGCCCTCCATCGTCTGGTCTGGGAATCCTCTGTAGAAATAAGGATGGTGAATGC
ATGTTAGTTTTTTCTCTCTTGTTCGACTTTTTCATGGAGCCTCAGATTGCTGAATTAAGGGGTATTTTGGAAGGTATGAGATTATCGCTTAGATGGGGTTGCTCGAAGCT
ACTAGTTGAATCTGACATTGGCAATTAATTTCATAGTGGGGAAATCAGAAGTGTGGAATGATGTGGAAGCGGTAGCGGTAGTGTTGGCCATTTGGGAGCT
Protein sequenceShow/hide protein sequence
MDQNQFLKLKRSSRVDSNHMLGALDRQKKKIHGEKIPPIHIRSKWIEEYLRTFLQANSRNRPPSTDDRHQQSTQSIHQDSWSPPPEGFWKMNSVASCSISPPSSGLGILC
RNKDGECMLVFSLLFDFFMEPQIAELRGILEGMRLSLRWGCSKLLVESDIGN