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Lcy06g010700 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g010700
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:11869178..11869699
RNA-Seq ExpressionLcy06g010700
SyntenyLcy06g010700
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]3.3e-0931.62Show/hide
Query:  SDAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFD
        +DAAV  +  G+G G +L + N EI  AM  F+    +PL A+++A+  G+ L  R+ + R  V +DS+ A+ ++   S    E   W+  I+A +  F 
Subjt:  SDAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFD

Query:  SLSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFP
         + F +V R +N  A +L ++    R   LW  +FP
Subjt:  SLSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFP

XP_024036832.1 LRR receptor-like serine/threonine-protein kinase IOS1 [Citrus clementina]1.5e-0933.86Show/hide
Query:  GYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDSLSFNYVPRHNN
        G GAV+ D NG+I AA+   N    S   AE  A++ G++L +  ++T   + SD +  +++VN      SE+   I+ IQ   ++F  +   ++PRH N
Subjt:  GYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDSLSFNYVPRHNN

Query:  RKADYLAKDAYVHRRSMLWLENFPQDL
          A YLAK A       +WL N P  L
Subjt:  RKADYLAKDAYVHRRSMLWLENFPQDL

XP_024178222.1 uncharacterized protein LOC112184181 [Rosa chinensis]1.3e-0830.5Show/hide
Query:  EMVLFSDAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAM
        E+ L  D A   Q    G G VL + +GE++AA +       SP+ AE++A+ +G++L++ ++    C+ SD + A++ +N  S I +E    I  I  +
Subjt:  EMVLFSDAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAM

Query:  SESFDSLSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFP
         +    +   Y PR  N+ A  LA  AY   +S+ WL   P
Subjt:  SESFDSLSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFP

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]1.6e-1134.78Show/hide
Query:  DAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDS
        DAA  S++  AG GAV+ D NG+I AA    N    S   AE  A++ G++L +  +++   + SD +  +++VN      SE+   I+ IQ   + F  
Subjt:  DAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDS

Query:  LSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFPQDL
        +  N++PRH N  A YLAK A       +WL N P +L
Subjt:  LSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFPQDL

XP_024956542.1 uncharacterized protein LOC112498908 [Citrus sinensis]2.8e-0831.41Show/hide
Query:  PNEGHREMVLFSDAAVGSQSAGAGYGAVLFDHNGEIRA-AMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHW
        P EG   + + +DAA  S+   AG GAV+ D NG++ A A++V  F   S   AE  A+  G+++ +   +    + SDS   + +VN      SE++  
Subjt:  PNEGHREMVLFSDAAVGSQSAGAGYGAVLFDHNGEIRA-AMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHW

Query:  IIQIQAMSESFDSLSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFPQDLLFLSN
        +++IQ + ESFD +S  Y  R  N  A  L K A     +++W  ++P  ++F S+
Subjt:  IIQIQAMSESFDSLSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFPQDLLFLSN

TrEMBL top hitse value%identityAlignment
A0A2H5Q972 Uncharacterized protein (Fragment)1.1e-0731.58Show/hide
Query:  PNEGHREMVLFSDAAVGSQSAGAGYGAVLFDHNGEIRA-AMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHW
        P EG   + + +DAA  S+   AG GAV+ D NG++ A A++V  F   S   AE  A+  G+++ +   +    + SDS   + +VN      SE++  
Subjt:  PNEGHREMVLFSDAAVGSQSAGAGYGAVLFDHNGEIRA-AMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHW

Query:  IIQIQAMSESFDSLSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFPQDLL
        +++IQ + ESFD +S  Y  R  N  A  LAK A     +++W  ++P  ++
Subjt:  IIQIQAMSESFDSLSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFPQDLL

A0A6J1DZK3 uncharacterized protein LOC1110249681.6e-0931.62Show/hide
Query:  SDAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFD
        +DAAV  +  G+G G +L + N EI  AM  F+    +PL A+++A+  G+ L  R+ + R  V +DS+ A+ ++   S    E   W+  I+A +  F 
Subjt:  SDAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFD

Query:  SLSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFP
         + F +V R +N  A +L ++    R   LW  +FP
Subjt:  SLSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFP

A0A7J6F713 Uncharacterized protein3.0e-0831.11Show/hide
Query:  DAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDS
        DA V + +     G V+ DH+G++  +   F+    S L AE +A+I+G++L     + +  V SD +NAI ++N  S   S+V + + +I  +S +FD 
Subjt:  DAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDS

Query:  LSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFP
        + F +  R  N  A  LAK A   + S  W    P
Subjt:  LSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFP

A0A7J6I094 RNase H domain-containing protein3.0e-0831.11Show/hide
Query:  DAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDS
        DA V + +     G V+ DH+G++  +   F+    S L AE +A+I+G++L     + +  V SD +NAI ++N  S   S+V + + +I  +S +FD 
Subjt:  DAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDS

Query:  LSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFP
        + F +  R  N  A  LAK A   + S  W    P
Subjt:  LSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFP

V4M0L1 Uncharacterized protein (Fragment)6.7e-0843.53Show/hide
Query:  SPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDSLSFNYVPRHNNRKADYLAKDA
        SPL AE +A+ + + +    +I    VFSDS+  IK +N  +T+ SE+H  +  I  +SE FDS+SFN+VPR  N   D LAK+A
Subjt:  SPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDSLSFNYVPRHNNRKADYLAKDA

SwissProt top hitse value%identityAlignment
P64956 Uncharacterized protein Mb2253c2.5e-0426.92Show/hide
Query:  EMVLFSDAAVGSQSAGAGYGAVLF--DHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTIT-SEVHHWIIQI
        ++V+ +D         AGYGAV++  DH+  +  + +     + +   AE   LI G+    ++  T A V  DS   ++ ++G   +   ++    +Q 
Subjt:  EMVLFSDAAVGSQSAGAGYGAVLF--DHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTIT-SEVHHWIIQI

Query:  QAMSESFDSLSFNYVPRHNNRKADYLAKDA
        QA++  F  +++ +VPR  N  AD LA DA
Subjt:  QAMSESFDSLSFNYVPRHNNRKADYLAKDA

P9WLH4 Uncharacterized protein MT22872.5e-0426.92Show/hide
Query:  EMVLFSDAAVGSQSAGAGYGAVLF--DHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTIT-SEVHHWIIQI
        ++V+ +D         AGYGAV++  DH+  +  + +     + +   AE   LI G+    ++  T A V  DS   ++ ++G   +   ++    +Q 
Subjt:  EMVLFSDAAVGSQSAGAGYGAVLF--DHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTIT-SEVHHWIIQI

Query:  QAMSESFDSLSFNYVPRHNNRKADYLAKDA
        QA++  F  +++ +VPR  N  AD LA DA
Subjt:  QAMSESFDSLSFNYVPRHNNRKADYLAKDA

P9WLH5 Bifunctional protein Rv2228c2.5e-0426.92Show/hide
Query:  EMVLFSDAAVGSQSAGAGYGAVLF--DHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTIT-SEVHHWIIQI
        ++V+ +D         AGYGAV++  DH+  +  + +     + +   AE   LI G+    ++  T A V  DS   ++ ++G   +   ++    +Q 
Subjt:  EMVLFSDAAVGSQSAGAGYGAVLF--DHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTIT-SEVHHWIIQI

Query:  QAMSESFDSLSFNYVPRHNNRKADYLAKDA
        QA++  F  +++ +VPR  N  AD LA DA
Subjt:  QAMSESFDSLSFNYVPRHNNRKADYLAKDA

Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein1.1e-0529.23Show/hide
Query:  EMVLFSDAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTS-----YSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWII
        + + + DAA   QS+ AG G V         +  E+  F++      SPLAAE  A+ + +    ++E +   V SDS + +  +N N ++ +E+   ++
Subjt:  EMVLFSDAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTS-----YSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWII

Query:  QIQAMSESFDSLSFNYVPRHNNRKADYLAK
        +I+++   F S+SF ++PR  N  AD  AK
Subjt:  QIQAMSESFDSLSFNYVPRHNNRKADYLAK

AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.3e-0729.32Show/hide
Query:  GAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDSLSFNYVPRHNNRK
        G V+ D NG    A +       + L +E+ ALI  ++        R C   D+     ++NG S +   VH+WI  I      F+S+ FN++ RH+N  
Subjt:  GAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDSLSFNYVPRHNNRK

Query:  ADYLAKDAYVHRRSMLWLENF--PQDLLFLSNC
        AD LAK     +   L+L +F  P  + +  +C
Subjt:  ADYLAKDAYVHRRSMLWLENF--PQDLLFLSNC

AT1G77815.1 BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G27870.1)2.8e-0637.18Show/hide
Query:  RACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDSLSFNYVPRHNNRKADYLAKDAYVHRRSM----LWLEN
        R C   D+     ++NG S +   VH+WI  I   S  F+S+ FN++ RH+N  AD LAK A +  +S+    LW+ N
Subjt:  RACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDSLSFNYVPRHNNRKADYLAKDAYVHRRSM----LWLEN

AT3G25270.1 Ribonuclease H-like superfamily protein5.8e-0426.89Show/hide
Query:  DAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDS
        D A   Q+  A  G ++ D NG    + +    T+   L +E  ALI  ++        +     DS    +++N N  +     +WI + +   + F+ 
Subjt:  DAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMSESFDS

Query:  LSFNYVPRHNNRKADYLAK
          F +VPR NN+ AD LAK
Subjt:  LSFNYVPRHNNRKADYLAK

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.3e-0731.25Show/hide
Query:  MVLFSDAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMS
        + +F+DAA   ++   G+G V+ +         +        PL AE IAL   ++  Q + IT+  + SDS   I  +   S  T E +  I  I  +S
Subjt:  MVLFSDAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAMS

Query:  ESFDSLSFNYVPRHNNRKADYLAKDAYV
          F  +SF++VPR  NR AD LAK + +
Subjt:  ESFDSLSFNYVPRHNNRKADYLAKDAYV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCAAACAGCCGAACGAGGGACACAGGGAGATGGTTTTATTTTCAGATGCTGCTGTCGGCTCTCAAAGTGCAGGTGCTGGATATGGAGCTGTTCTTTTCGACCATAA
TGGTGAGATCCGTGCAGCTATGGAGGTCTTCAATTTTACGTCATACTCACCGCTCGCGGCGGAGGTAATTGCTTTAATTAATGGAATTCGTCTTTTACAACGAATGGAAA
TTACTCGTGCATGTGTTTTTTCGGATTCGATCAATGCTATCAAGATGGTTAATGGCAACAGCACCATTACATCTGAGGTACATCACTGGATTATTCAAATCCAGGCGATG
AGCGAATCATTTGATAGCTTATCCTTTAATTATGTTCCGAGACACAACAACAGGAAGGCAGACTATCTAGCCAAGGATGCTTATGTTCATAGACGTTCTATGCTTTGGCT
TGAGAATTTCCCTCAAGATTTGTTGTTTTTGAGTAATTGTGCTCGATGTAAGTGTACTGTTACTTGTGATTGTTCGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCAAACAGCCGAACGAGGGACACAGGGAGATGGTTTTATTTTCAGATGCTGCTGTCGGCTCTCAAAGTGCAGGTGCTGGATATGGAGCTGTTCTTTTCGACCATAA
TGGTGAGATCCGTGCAGCTATGGAGGTCTTCAATTTTACGTCATACTCACCGCTCGCGGCGGAGGTAATTGCTTTAATTAATGGAATTCGTCTTTTACAACGAATGGAAA
TTACTCGTGCATGTGTTTTTTCGGATTCGATCAATGCTATCAAGATGGTTAATGGCAACAGCACCATTACATCTGAGGTACATCACTGGATTATTCAAATCCAGGCGATG
AGCGAATCATTTGATAGCTTATCCTTTAATTATGTTCCGAGACACAACAACAGGAAGGCAGACTATCTAGCCAAGGATGCTTATGTTCATAGACGTTCTATGCTTTGGCT
TGAGAATTTCCCTCAAGATTTGTTGTTTTTGAGTAATTGTGCTCGATGTAAGTGTACTGTTACTTGTGATTGTTCGAAGTAA
Protein sequenceShow/hide protein sequence
MVKQPNEGHREMVLFSDAAVGSQSAGAGYGAVLFDHNGEIRAAMEVFNFTSYSPLAAEVIALINGIRLLQRMEITRACVFSDSINAIKMVNGNSTITSEVHHWIIQIQAM
SESFDSLSFNYVPRHNNRKADYLAKDAYVHRRSMLWLENFPQDLLFLSNCARCKCTVTCDCSK