; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy06g010860 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g010860
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr06:12168067..12168645
RNA-Seq ExpressionLcy06g010860
SyntenyLcy06g010860
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067918.1 hypothetical protein E6C27_scaffold138G00850 [Cucumis melo var. makuwa]3.8e-2253.19Show/hide
Query:  KIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRSYQNVKELIEEFLFHLPFREKGRFL
        ++RFFIWQV+ GRVNT DRL R  T  VGPFCC++C+KAEE+LDH+ C C YA  VW  F    G+     ++V+  IEEFL HL F+++  FL
Subjt:  KIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRSYQNVKELIEEFLFHLPFREKGRFL

TYK09969.1 calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa]3.5e-2840.46Show/hide
Query:  SFGFYRAFSDRKTTDVMTLLSLIEGFEFREGRRDSRFWSPSSSEGYSCSSFFRWLMDSSHHGESIFSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGM
        SFGF RA SDR+T++V+ L+SL+E   FR GRRD   WSP   EG+ C SFF+ L++S+   ES+ SL+W++KVP K   F WQV               
Subjt:  SFGFYRAFSDRKTTDVMTLLSLIEGFEFREGRRDSRFWSPSSSEGYSCSSFFRWLMDSSHHGESIFSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGM

Query:  TSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRSYQNVKELIEEFLFHLPFREKGRFLWQA
                       EE+LDH+L  C+    VWD F   FG+    +++V+  +EEFL + P  E+G FLW A
Subjt:  TSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRSYQNVKELIEEFLFHLPFREKGRFLWQA

TYK11201.1 SIL1 [Cucumis melo var. makuwa]3.8e-2245.86Show/hide
Query:  SSFFRWLMDS-SHHGESI-FSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRS
        +S F  L D+    GE I  S   ++KVP K RFFI QV+ G +NT DRL + MT LVGPF C +C+KA+E+LD++   C +   VW+ F   F      
Subjt:  SSFFRWLMDS-SHHGESI-FSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRS

Query:  YQNVKELIEEFLFHLPFREKGRFLWQAGLCALL
         ++V+  IEEFL H PFREK   LW AG+CA++
Subjt:  YQNVKELIEEFLFHLPFREKGRFLWQAGLCALL

TYK29954.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-2343.61Show/hide
Query:  FEFREGRRDSRFWSPSSSEGYSCSSFFRWLMDSSHHGESIFSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCT
        F   EG R+   WS + S+G+S  S F  L+D S   E +F  VW++KV  K+RFF WQV+  R N  DRL R         CCI+CRKA+E+LDH+L  
Subjt:  FEFREGRRDSRFWSPSSSEGYSCSSFFRWLMDSSHHGESIFSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCT

Query:  CDYACVVWDLFYDAFGMQMRSYQNVKELIEEFL
        C YA  VW  F   F +++   + V++ IEEFL
Subjt:  CDYACVVWDLFYDAFGMQMRSYQNVKELIEEFL

XP_008464727.1 PREDICTED: uncharacterized protein LOC103502543 [Cucumis melo]5.8e-2348.72Show/hide
Query:  RAFSDRKTTDVMTLLSLIEGFEFREGRRDSRFWSPSSSEGYSCSSFFRWLMDSSHHGESIFSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVG
        R  S ++ T V +LLS ++G  FREGRRD   W+P+ S G+   S F  L+D +   E +F +VW   VP K+ FFIWQV+  +VN  DRL R  TSLVG
Subjt:  RAFSDRKTTDVMTLLSLIEGFEFREGRRDSRFWSPSSSEGYSCSSFFRWLMDSSHHGESIFSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVG

Query:  PFCCIICRKAEENLDHI
         FCC++C+KAE +LDH+
Subjt:  PFCCIICRKAEENLDHI

TrEMBL top hitse value%identityAlignment
A0A1S3CMM8 uncharacterized protein LOC1035025432.8e-2348.72Show/hide
Query:  RAFSDRKTTDVMTLLSLIEGFEFREGRRDSRFWSPSSSEGYSCSSFFRWLMDSSHHGESIFSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVG
        R  S ++ T V +LLS ++G  FREGRRD   W+P+ S G+   S F  L+D +   E +F +VW   VP K+ FFIWQV+  +VN  DRL R  TSLVG
Subjt:  RAFSDRKTTDVMTLLSLIEGFEFREGRRDSRFWSPSSSEGYSCSSFFRWLMDSSHHGESIFSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVG

Query:  PFCCIICRKAEENLDHI
         FCC++C+KAE +LDH+
Subjt:  PFCCIICRKAEENLDHI

A0A5A7VJE4 zf-RVT domain-containing protein1.8e-2253.19Show/hide
Query:  KIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRSYQNVKELIEEFLFHLPFREKGRFL
        ++RFFIWQV+ GRVNT DRL R  T  VGPFCC++C+KAEE+LDH+ C C YA  VW  F    G+     ++V+  IEEFL HL F+++  FL
Subjt:  KIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRSYQNVKELIEEFLFHLPFREKGRFL

A0A5D3CHC7 SIL11.8e-2245.86Show/hide
Query:  SSFFRWLMDS-SHHGESI-FSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRS
        +S F  L D+    GE I  S   ++KVP K RFFI QV+ G +NT DRL + MT LVGPF C +C+KA+E+LD++   C +   VW+ F   F      
Subjt:  SSFFRWLMDS-SHHGESI-FSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRS

Query:  YQNVKELIEEFLFHLPFREKGRFLWQAGLCALL
         ++V+  IEEFL H PFREK   LW AG+CA++
Subjt:  YQNVKELIEEFLFHLPFREKGRFLWQAGLCALL

A0A5D3CI74 Calpain-type cysteine protease DEK11.7e-2840.46Show/hide
Query:  SFGFYRAFSDRKTTDVMTLLSLIEGFEFREGRRDSRFWSPSSSEGYSCSSFFRWLMDSSHHGESIFSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGM
        SFGF RA SDR+T++V+ L+SL+E   FR GRRD   WSP   EG+ C SFF+ L++S+   ES+ SL+W++KVP K   F WQV               
Subjt:  SFGFYRAFSDRKTTDVMTLLSLIEGFEFREGRRDSRFWSPSSSEGYSCSSFFRWLMDSSHHGESIFSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGM

Query:  TSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRSYQNVKELIEEFLFHLPFREKGRFLWQA
                       EE+LDH+L  C+    VWD F   FG+    +++V+  +EEFL + P  E+G FLW A
Subjt:  TSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRSYQNVKELIEEFLFHLPFREKGRFLWQA

A0A5D3E255 Reverse transcriptase7.4e-2443.61Show/hide
Query:  FEFREGRRDSRFWSPSSSEGYSCSSFFRWLMDSSHHGESIFSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCT
        F   EG R+   WS + S+G+S  S F  L+D S   E +F  VW++KV  K+RFF WQV+  R N  DRL R         CCI+CRKA+E+LDH+L  
Subjt:  FEFREGRRDSRFWSPSSSEGYSCSSFFRWLMDSSHHGESIFSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCT

Query:  CDYACVVWDLFYDAFGMQMRSYQNVKELIEEFL
        C YA  VW  F   F +++   + V++ IEEFL
Subjt:  CDYACVVWDLFYDAFGMQMRSYQNVKELIEEFL

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657504.8e-0427.36Show/hide
Query:  GRRDSRFWSPSSSEGYSCSSFFRWLMDSS---HHGESIFSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCD
        G RD   W  S    +S  S +  L        +  S F+ +WKV+VP +++ F+W V +  V T +   R    L     C +C+   E++ H+L  C 
Subjt:  GRRDSRFWSPSSSEGYSCSSFFRWLMDSS---HHGESIFSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCD

Query:  YACVVW
            +W
Subjt:  YACVVW

Arabidopsis top hitse value%identityAlignment
AT1G60720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.6e-0525Show/hide
Query:  VWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRSYQNVKELIEEFLFHLPFREKGR
        VW      K  F +W     R+ T  RL+      +  F C +C    E+ DH+L +C++A  VW L +     + R + +  EL+              
Subjt:  VWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRSYQNVKELIEEFLFHLPFREKGR

Query:  FLWQAGLCALLWTLWGERNN
         L +    A+++ +W +RNN
Subjt:  FLWQAGLCALLWTLWGERNN

AT2G02650.1 Ribonuclease H-like superfamily protein6.9e-0627.73Show/hide
Query:  VWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRSYQNVKELIEEFLFHLPFREKGR
        +WK+ V  KI+ F+W+ + G + T  RL R       P C   C + EE + HI+  C Y   VW       G Q     + ++ +   L  L   +   
Subjt:  VWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRSYQNVKELIEEFLFHLPFREKGR

Query:  FLWQAGLCALLWTLWGERN
         L +     ++W LW  RN
Subjt:  FLWQAGLCALLWTLWGERN

AT3G25270.1 Ribonuclease H-like superfamily protein3.1e-0628Show/hide
Query:  VWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGM---QMRSYQNVKELIEEFLFHLPFRE
        +WK+K   KI+ F+W+++ G + T D L R    +     C  C + +E   H+   C YA  VW     A G+   ++R+     E   E L       
Subjt:  VWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFCCIICRKAEENLDHILCTCDYACVVWDLFYDAFGM---QMRSYQNVKELIEEFLFHLPFRE

Query:  KGRFLWQAGLCALLWTLWGERNNSV
        +   L+   +  +LW LW  RN  V
Subjt:  KGRFLWQAGLCALLWTLWGERNNSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCGTTTGGTTTCTATCGTGCCTTTTCCGATAGGAAAACGACGGATGTCATGACCCTCCTTTCTTTGATCGAGGGGTTTGAGTTTAGGGAGGGGAGGAGAGATAG
TAGATTCTGGAGCCCCAGTTCGTCAGAGGGGTATTCTTGTAGCTCTTTCTTTCGTTGGTTGATGGATTCTTCTCATCATGGGGAGTCGATATTTTCCCTTGTGTGGAAGG
TGAAAGTGCCGAATAAGATTAGGTTCTTTATTTGGCAAGTTATCCATGGCAGAGTAAATACTTTTGATAGGCTATCGAGAGGCATGACCTCGTTGGTGGGCCCGTTTTGT
TGCATTATTTGTCGGAAGGCGGAGGAAAACCTGGATCACATTCTTTGTACTTGCGACTATGCATGTGTGGTGTGGGATTTGTTCTATGATGCTTTTGGGATGCAGATGCG
GAGTTATCAGAATGTTAAGGAGTTGATCGAGGAGTTCCTCTTCCATCTACCTTTTCGCGAGAAGGGGAGATTTTTGTGGCAAGCTGGGTTGTGTGCTTTGTTATGGACTT
TATGGGGGGAAAGAAATAATAGTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCGTTTGGTTTCTATCGTGCCTTTTCCGATAGGAAAACGACGGATGTCATGACCCTCCTTTCTTTGATCGAGGGGTTTGAGTTTAGGGAGGGGAGGAGAGATAG
TAGATTCTGGAGCCCCAGTTCGTCAGAGGGGTATTCTTGTAGCTCTTTCTTTCGTTGGTTGATGGATTCTTCTCATCATGGGGAGTCGATATTTTCCCTTGTGTGGAAGG
TGAAAGTGCCGAATAAGATTAGGTTCTTTATTTGGCAAGTTATCCATGGCAGAGTAAATACTTTTGATAGGCTATCGAGAGGCATGACCTCGTTGGTGGGCCCGTTTTGT
TGCATTATTTGTCGGAAGGCGGAGGAAAACCTGGATCACATTCTTTGTACTTGCGACTATGCATGTGTGGTGTGGGATTTGTTCTATGATGCTTTTGGGATGCAGATGCG
GAGTTATCAGAATGTTAAGGAGTTGATCGAGGAGTTCCTCTTCCATCTACCTTTTCGCGAGAAGGGGAGATTTTTGTGGCAAGCTGGGTTGTGTGCTTTGTTATGGACTT
TATGGGGGGAAAGAAATAATAGTGTTTAG
Protein sequenceShow/hide protein sequence
MVSFGFYRAFSDRKTTDVMTLLSLIEGFEFREGRRDSRFWSPSSSEGYSCSSFFRWLMDSSHHGESIFSLVWKVKVPNKIRFFIWQVIHGRVNTFDRLSRGMTSLVGPFC
CIICRKAEENLDHILCTCDYACVVWDLFYDAFGMQMRSYQNVKELIEEFLFHLPFREKGRFLWQAGLCALLWTLWGERNNSV