; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy06g011000 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g011000
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein Iojap-related, mitochondrial
Genome locationChr06:12635775..12639907
RNA-Seq ExpressionLcy06g011000
SyntenyLcy06g011000
Gene Ontology termsGO:0017148 - negative regulation of translation (biological process)
GO:0090071 - negative regulation of ribosome biogenesis (biological process)
GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domainsIPR043519 - Nucleotidyltransferase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029243.1 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]1.9e-0976.19Show/hide
Query:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV
        GK+VVHALDENA+TYYN+ESLWS +T QDDSS +LD+ALVK+
Subjt:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV

XP_022131306.1 protein Iojap-related, mitochondrial [Momordica charantia]3.0e-1080.95Show/hide
Query:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV
        GK+VVHALDENA+TYYN+ESLWSTET  DDSS DLD+ALVK+
Subjt:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV

XP_022961631.1 protein Iojap-related, mitochondrial [Cucurbita moschata]1.9e-0976.19Show/hide
Query:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV
        GK+VVHALDENA+TYYN+ESLWS +T QDDSS +LD+ALVK+
Subjt:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV

XP_023545975.1 protein Iojap-related, mitochondrial [Cucurbita pepo subsp. pepo]1.9e-0976.19Show/hide
Query:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV
        GK+VVHALDENA+TYYN+ESLWS +T QDDSS +LD+ALVK+
Subjt:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV

XP_038884261.1 protein Iojap-related, mitochondrial [Benincasa hispida]6.7e-1078.57Show/hide
Query:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV
        GK+VVHALDENA++YYN+ESLWSTET QDDSS DLD+A VK+
Subjt:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV

TrEMBL top hitse value%identityAlignment
A0A0A0LNG9 Uncharacterized protein1.2e-0976.19Show/hide
Query:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV
        GK+VVHALDENA++YYN+ESLWSTET  DDS+ DLD+ALVK+
Subjt:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV

A0A5A7UYH0 Protein Iojap-related1.2e-0976.19Show/hide
Query:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV
        GK+VVHALDENA++YYN+ESLWSTET  DDS+ DLD+ALVK+
Subjt:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV

A0A6J1BP74 protein Iojap-related, mitochondrial1.5e-1080.95Show/hide
Query:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV
        GK+VVHALDENA+TYYN+ESLWSTET  DDSS DLD+ALVK+
Subjt:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV

A0A6J1HAW7 protein Iojap-related, mitochondrial9.4e-1076.19Show/hide
Query:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV
        GK+VVHALDENA+TYYN+ESLWS +T QDDSS +LD+ALVK+
Subjt:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV

A0A6J1KB66 protein Iojap-related, mitochondrial1.2e-0976.19Show/hide
Query:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV
        GK+VVHALDE A+TYYN+ESLWST+T QDDSS +LD+ALVK+
Subjt:  GKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKV

SwissProt top hitse value%identityAlignment
C0Z361 Chaperonin 60 subunit beta 3, chloroplastic3.3e-0485.19Show/hide
Query:  KVELEFPVENIGAKLVRQDATKTNDLA
        +VELE PVENIGAKLVRQ A+KTNDLA
Subjt:  KVELEFPVENIGAKLVRQDATKTNDLA

P21240 Chaperonin 60 subunit beta 1, chloroplastic4.4e-0485.19Show/hide
Query:  KVELEFPVENIGAKLVRQDATKTNDLA
        +VELE PVENIGAKLVRQ A KTNDLA
Subjt:  KVELEFPVENIGAKLVRQDATKTNDLA

P21241 RuBisCO large subunit-binding protein subunit beta, chloroplastic4.4e-0485.19Show/hide
Query:  KVELEFPVENIGAKLVRQDATKTNDLA
        +VELE PVENIGAKLVRQ A KTNDLA
Subjt:  KVELEFPVENIGAKLVRQDATKTNDLA

Q9CAF9 Protein Iojap-related, mitochondrial2.3e-0558.14Show/hide
Query:  GKIVVHALDENAKTYYNMESLWSTETR-QDDSSHDLDKALVKV
        GK VVHALDE A+ Y+N+ESLWS E+   D S  DL    VKV
Subjt:  GKIVVHALDENAKTYYNMESLWSTETR-QDDSSHDLDKALVKV

Q9LJE4 Chaperonin 60 subunit beta 2, chloroplastic4.4e-0485.19Show/hide
Query:  KVELEFPVENIGAKLVRQDATKTNDLA
        +VELE PVENIGAKLVRQ A KTNDLA
Subjt:  KVELEFPVENIGAKLVRQDATKTNDLA

Arabidopsis top hitse value%identityAlignment
AT1G55490.1 chaperonin 60 beta3.1e-0585.19Show/hide
Query:  KVELEFPVENIGAKLVRQDATKTNDLA
        +VELE PVENIGAKLVRQ A KTNDLA
Subjt:  KVELEFPVENIGAKLVRQDATKTNDLA

AT1G55490.2 chaperonin 60 beta3.1e-0585.19Show/hide
Query:  KVELEFPVENIGAKLVRQDATKTNDLA
        +VELE PVENIGAKLVRQ A KTNDLA
Subjt:  KVELEFPVENIGAKLVRQDATKTNDLA

AT1G67620.1 Lojap-related protein1.6e-0658.14Show/hide
Query:  GKIVVHALDENAKTYYNMESLWSTETR-QDDSSHDLDKALVKV
        GK VVHALDE A+ Y+N+ESLWS E+   D S  DL    VKV
Subjt:  GKIVVHALDENAKTYYNMESLWSTETR-QDDSSHDLDKALVKV

AT5G56500.1 TCP-1/cpn60 chaperonin family protein2.4e-0585.19Show/hide
Query:  KVELEFPVENIGAKLVRQDATKTNDLA
        +VELE PVENIGAKLVRQ A+KTNDLA
Subjt:  KVELEFPVENIGAKLVRQDATKTNDLA

AT5G56500.2 TCP-1/cpn60 chaperonin family protein2.4e-0585.19Show/hide
Query:  KVELEFPVENIGAKLVRQDATKTNDLA
        +VELE PVENIGAKLVRQ A+KTNDLA
Subjt:  KVELEFPVENIGAKLVRQDATKTNDLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTCCAATTATTGTGACAAAAGTGAGAAAACTATAGGAGTCCATACTTGTGCTCAGGACAATATCAATCCCAAGTTTTTCTTTGAATATTCTCTTTTAGGTAAAAT
AGTTGTTCATGCCCTTGATGAGAACGCCAAAACTTACTACAATATGGAGAGCCTTTGGTCTACTGAGACACGACAAGATGACTCTTCTCATGATTTGGACAAAGCTTTAG
TGAAGGTTGAATTGGAGTTTCCAGTTGAGAACATTGGTGCGAAGCTAGTCAGACAAGATGCTACAAAGACCAATGACTTGGCTAAGCTCCTTCATTGGGGTTTTCAGATC
TGGCCGGAAACTACGCGCGTGGGTCTTTCTGGTCTGACAGTCGTGGGTCTTGTGTGTTGCAGTCGAAAACGAGGAGAGAGGGATGCAATCGGCGTTGCTCACGAAGACAC
AGTCCCTCAGATCTCGCAAAGACGAAGCCGAAAACACAGTCCCTCAGATCTTGCGAAGATGCAACTGAAATCGCAGTCCCTCAGATCTCGCGAAGACGCAGCCGAAAACC
AGTCCCTTAGATCTCGCGAAGATTCGCTCACCGTCGTTCACGAAGATCCACTCATTGTCGCTCACGAATATCCTCTCAGCTCTTTGTTCAATCGCAACCCAGCTCAGAGG
CGCCACCGTTCAGATCTTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACTCCAATTATTGTGACAAAAGTGAGAAAACTATAGGAGTCCATACTTGTGCTCAGGACAATATCAATCCCAAGTTTTTCTTTGAATATTCTCTTTTAGGTAAAAT
AGTTGTTCATGCCCTTGATGAGAACGCCAAAACTTACTACAATATGGAGAGCCTTTGGTCTACTGAGACACGACAAGATGACTCTTCTCATGATTTGGACAAAGCTTTAG
TGAAGGTTGAATTGGAGTTTCCAGTTGAGAACATTGGTGCGAAGCTAGTCAGACAAGATGCTACAAAGACCAATGACTTGGCTAAGCTCCTTCATTGGGGTTTTCAGATC
TGGCCGGAAACTACGCGCGTGGGTCTTTCTGGTCTGACAGTCGTGGGTCTTGTGTGTTGCAGTCGAAAACGAGGAGAGAGGGATGCAATCGGCGTTGCTCACGAAGACAC
AGTCCCTCAGATCTCGCAAAGACGAAGCCGAAAACACAGTCCCTCAGATCTTGCGAAGATGCAACTGAAATCGCAGTCCCTCAGATCTCGCGAAGACGCAGCCGAAAACC
AGTCCCTTAGATCTCGCGAAGATTCGCTCACCGTCGTTCACGAAGATCCACTCATTGTCGCTCACGAATATCCTCTCAGCTCTTTGTTCAATCGCAACCCAGCTCAGAGG
CGCCACCGTTCAGATCTTCGTTAG
Protein sequenceShow/hide protein sequence
MYSNYCDKSEKTIGVHTCAQDNINPKFFFEYSLLGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKVELEFPVENIGAKLVRQDATKTNDLAKLLHWGFQI
WPETTRVGLSGLTVVGLVCCSRKRGERDAIGVAHEDTVPQISQRRSRKHSPSDLAKMQLKSQSLRSREDAAENQSLRSREDSLTVVHEDPLIVAHEYPLSSLFNRNPAQR
RHRSDLR