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Lcy06g011200 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g011200
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:12998236..12998730
RNA-Seq ExpressionLcy06g011200
SyntenyLcy06g011200
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608327.1 hypothetical protein SDJN03_01669, partial [Cucurbita argyrosperma subsp. sororia]7.2e-1437.32Show/hide
Query:  TEWTSPPPNHFKLNMDASLAHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPL
        + W S P +  KL++DA++ + EM          G  M   E        +  A  +    G QL + +GL+ VW +++SK+VW LL D +QH  EIA L
Subjt:  TEWTSPPPNHFKLNMDASLAHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPL

Query:  IHQLNFLATKHHIRGFLLTPREGNKVAHRLATHARTTKHSEV
        I  L  L+  H I+GFL TP++  K  H LA HA  TKH E+
Subjt:  IHQLNFLATKHHIRGFLLTPREGNKVAHRLATHARTTKHSEV

MBA0755499.1 hypothetical protein [Gossypium gossypioides]3.3e-1136.73Show/hide
Query:  RSRVARNSHP-----TEWTSPPPNHFKLNMDA--SLAHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIV
        RS      HP      +W+ PP   FK+N+DA  S+A+  + T  IIRN +G  M +         SV  AEA A++ G+Q ALD G S V  E DS++V
Subjt:  RSRVARNSHP-----TEWTSPPPNHFKLNMDA--SLAHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIV

Query:  WNLLHDHEQHLNEIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRL
         N +    +  +E  P    +  LA K H   F    REGN  AH L
Subjt:  WNLLHDHEQHLNEIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRL

TXG50387.1 hypothetical protein EZV62_022911 [Acer yangbiense]6.7e-1237.41Show/hide
Query:  SHPTEWTSPPPNHFKLNMDAS--LAHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLN
        SH   W +P    FK+N DAS  L  G+    +IIR+ KG  +AA  +      SV   EAQA +EG+ LA+D G+S V  E D+  V  LL D      
Subjt:  SHPTEWTSPPPNHFKLNMDAS--LAHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLN

Query:  EIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRLATHA
        E+  +IH    L    ++  ++   RE N VAH +A HA
Subjt:  EIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRLATHA

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]3.7e-1033.57Show/hide
Query:  NSHPTEWTSPPPNHFKLNMDASLAHGEMRTCM--IIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHL
        N+    W  P    +K+N DAS    +    +  IIRN +G+ MA+   +     SV  AEA   +EG+QLA   G++PV  E DS  ++NL     + L
Subjt:  NSHPTEWTSPPPNHFKLNMDASLAHGEMRTCM--IIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHL

Query:  NEIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRLATHA
        +E   ++ +     T+     F    REGNK AH LA  A
Subjt:  NEIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRLATHA

XP_039064257.1 uncharacterized protein LOC120209283 [Hibiscus syriacus]4.8e-1037.14Show/hide
Query:  SHP----TEWTSPPPNHFKLNMDASLAH--GEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHE
        +HP    T W  P     K+N DAS +H   E  + +IIR+S GE + A +   R + SV  AEA A +  +Q  +D G      E DSK +   L   E
Subjt:  SHP----TEWTSPPPNHFKLNMDASLAH--GEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHE

Query:  QHLNEIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRLA
        + L+E+  +I    FLA+K H   F  T R GN  AH LA
Subjt:  QHLNEIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRLA

TrEMBL top hitse value%identityAlignment
A0A0D2MPE5 RNase H domain-containing protein2.6e-0934.69Show/hide
Query:  RSRVARNSHP-----TEWTSPPPNHFKLNMDASLAHGEMRTCM--IIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIV
        RS      HP      +W+ PP  +FK+N+DA L+    R  +  IIRN++G  M           S+  AEA A+++G+Q ALD G S V  E DS++V
Subjt:  RSRVARNSHP-----TEWTSPPPNHFKLNMDASLAHGEMRTCM--IIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIV

Query:  WNLLHDHEQHLNEIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRL
         N +    +  +E  P    +  LA K     F    REGN  AH L
Subjt:  WNLLHDHEQHLNEIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRL

A0A2N9EU90 Uncharacterized protein2.6e-0933.1Show/hide
Query:  WTSPPPNHFKLNMDASL--AHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPL
        W+ P P  +K+N DA+      E+   +IIRN  GE MA++ +      SV   EA A    +Q+A+D GL  +  E DS+ V + L +H         L
Subjt:  WTSPPPNHFKLNMDASL--AHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPL

Query:  IHQLNFLATKHHIRGFLLTPREGNKVAHRLATHARTTKHSEV
        I+  N      H   FL   R+GN +AH +A  A+ ++  EV
Subjt:  IHQLNFLATKHHIRGFLLTPREGNKVAHRLATHARTTKHSEV

A0A5C7H0P0 Uncharacterized protein3.3e-1237.41Show/hide
Query:  SHPTEWTSPPPNHFKLNMDAS--LAHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLN
        SH   W +P    FK+N DAS  L  G+    +IIR+ KG  +AA  +      SV   EAQA +EG+ LA+D G+S V  E D+  V  LL D      
Subjt:  SHPTEWTSPPPNHFKLNMDAS--LAHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLN

Query:  EIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRLATHA
        E+  +IH    L    ++  ++   RE N VAH +A HA
Subjt:  EIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRLATHA

A0A6J1CIF1 uncharacterized protein LOC1110112371.8e-1033.57Show/hide
Query:  NSHPTEWTSPPPNHFKLNMDASLAHGEMRTCM--IIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHL
        N+    W  P    +K+N DAS    +    +  IIRN +G+ MA+   +     SV  AEA   +EG+QLA   G++PV  E DS  ++NL     + L
Subjt:  NSHPTEWTSPPPNHFKLNMDASLAHGEMRTCM--IIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHL

Query:  NEIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRLATHA
        +E   ++ +     T+     F    REGNK AH LA  A
Subjt:  NEIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRLATHA

A0A7J9D462 Uncharacterized protein1.6e-1136.73Show/hide
Query:  RSRVARNSHP-----TEWTSPPPNHFKLNMDA--SLAHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIV
        RS      HP      +W+ PP   FK+N+DA  S+A+  + T  IIRN +G  M +         SV  AEA A++ G+Q ALD G S V  E DS++V
Subjt:  RSRVARNSHP-----TEWTSPPPNHFKLNMDA--SLAHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIV

Query:  WNLLHDHEQHLNEIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRL
         N +    +  +E  P    +  LA K H   F    REGN  AH L
Subjt:  WNLLHDHEQHLNEIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein2.0e-0627.94Show/hide
Query:  TEWTSPPPNHFKLNMDASLAHGE--MRTCMIIRNSKGE-TMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEI
        ++W  PP    K N D+    G    R+   IR   G   +      + ++CS+  AEA   +  +Q+    GL  VW E DSK +  L+++ E H + +
Subjt:  TEWTSPPPNHFKLNMDASLAHGE--MRTCMIIRNSKGE-TMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEI

Query:  APLIHQLNFLATKHHIRGFLLTPREGNKVAHRLATH
          LI+ +     K          RE N  A  LA+H
Subjt:  APLIHQLNFLATKHHIRGFLLTPREGNKVAHRLATH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACTCAAGCAAAGCATCATGGAGACTGTGATCGATCGAGAGTTGCTCGTAACTCCCACCCAACGGAGTGGACATCGCCGCCTCCCAACCATTTCAAGCTA
AACATGGATGCGTCCTTAGCACATGGCGAGATGAGAACATGCATGATCATCAGAAACTCAAAGGGTGAAACAATGGCAGCTATAGAAAATTTTAGGAGAACGAGT
TGCTCTGTAGGGTGGGCAGAAGCACAAGCGCTTATGGAGGGTGTGCAACTAGCCTTGGATTCGGGCTTATCACCAGTCTGGGCAGAGATAGATTCCAAAATTGTG
TGGAATTTACTCCATGACCATGAACAACATTTAAATGAGATTGCCCCCCTAATTCACCAACTCAATTTTTTGGCCACAAAGCATCACATAAGGGGATTTCTTCTA
ACTCCGAGGGAAGGTAACAAAGTAGCACACCGGTTAGCTACTCATGCTCGTACAACAAAACACTCTGAAGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGACTCAAGCAAAGCATCATGGAGACTGTGATCGATCGAGAGTTGCTCGTAACTCCCACCCAACGGAGTGGACATCGCCGCCTCCCAACCATTTCAAGCTA
AACATGGATGCGTCCTTAGCACATGGCGAGATGAGAACATGCATGATCATCAGAAACTCAAAGGGTGAAACAATGGCAGCTATAGAAAATTTTAGGAGAACGAGT
TGCTCTGTAGGGTGGGCAGAAGCACAAGCGCTTATGGAGGGTGTGCAACTAGCCTTGGATTCGGGCTTATCACCAGTCTGGGCAGAGATAGATTCCAAAATTGTG
TGGAATTTACTCCATGACCATGAACAACATTTAAATGAGATTGCCCCCCTAATTCACCAACTCAATTTTTTGGCCACAAAGCATCACATAAGGGGATTTCTTCTA
ACTCCGAGGGAAGGTAACAAAGTAGCACACCGGTTAGCTACTCATGCTCGTACAACAAAACACTCTGAAGTCTGA
Protein sequenceShow/hide protein sequence
METQAKHHGDCDRSRVARNSHPTEWTSPPPNHFKLNMDASLAHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIV
WNLLHDHEQHLNEIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRLATHARTTKHSEV