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Lcy06g011850 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g011850
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:14366297..14370128
RNA-Seq ExpressionLcy06g011850
SyntenyLcy06g011850
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFP55557.1 non-ltr retroelement reverse transcriptase [Rosa rugosa]9.6e-0931.1Show/hide
Query:  QMISQGQNLIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERCTLECATI
        Q  S GQ L ++ D A +F++R  G G ++R+  G L  A  +      SSL AE +AI  G+ + ++  ++ + + SD L  I ++  KERC      +
Subjt:  QMISQGQNLIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERCTLECATI

Query:  FWDIENLRG--SFQEIFHANREFNYLADALAR-TGLYDSPQMWFSDYPDWGGALLSLFSSPRLL
          DI+N     +   I+H  RE N  A A+A+     +   +W  D PDW   L+SL    + L
Subjt:  FWDIENLRG--SFQEIFHANREFNYLADALAR-TGLYDSPQMWFSDYPDWGGALLSLFSSPRLL

CAA7057660.1 unnamed protein product [Microthlaspi erraticum]1.3e-0833.13Show/hide
Query:  EWINGYLSEFKSANQRKRSKEQSEQDVCQMISQGQNLIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQ
        EW+   L   K     + ++ +  +D         +   H D A + E+R  G+G + +NRN  L     + L    S L +EA+AI E ++ AI  G  
Subjt:  EWINGYLSEFKSANQRKRSKEQSEQDVCQMISQGQNLIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQ

Query:  RLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQEIFHAN--REFNYLADALARTGL
        RL + SDS  LIS I  K R + E   I  DI +L   FQ +F  +  R  N LAD+LA+  L
Subjt:  RLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQEIFHAN--REFNYLADALARTGL

KAG6693249.1 hypothetical protein I3842_10G159900 [Carya illinoinensis]7.3e-0930.82Show/hide
Query:  LIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERCTLECATIFWDIENLR
        L ++VD A   ++   G+G++LR+ NG +  A  +     +S++  EA+A+L G+++ +Q GV ++ + SDSL L++ +     C  E   I  DI  L 
Subjt:  LIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERCTLECATIFWDIENLR

Query:  GSFQE--IFHANREFNYLADALARTGL-YDSPQMWFSDYPDWGGAL
          F+E  + H +R  N  A  LAR     +   MW+   P +G A+
Subjt:  GSFQE--IFHANREFNYLADALARTGL-YDSPQMWFSDYPDWGGAL

XP_042954689.1 uncharacterized protein LOC122291107 [Carya illinoinensis]1.3e-0834.75Show/hide
Query:  LIMHVDAACDFENRRCGIGIVLRNRNGH--LKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERCTLECATIFWDIEN
        L +++D A   E+   GIG+VLR++ G   + C+K +  ++F   +  EA+A+L G+++  Q GV ++ + +D L L++ +     C  + A I  DI+ 
Subjt:  LIMHVDAACDFENRRCGIGIVLRNRNGH--LKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERCTLECATIFWDIEN

Query:  LRGSFQEI--FHANREFNYLADALAR-TGLYDSPQMWFSDY
        L   FQE+   H NR  N +A  LAR T L D   MW+ DY
Subjt:  LRGSFQEI--FHANREFNYLADALAR-TGLYDSPQMWFSDY

XP_042969199.1 uncharacterized protein LOC122301911 [Carya illinoinensis]1.7e-1035.25Show/hide
Query:  DAACDFENRRCGIGIVLRNRNGH--LKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSF
        DAAC   N + G+G+VLRN NG   + C+K +  ++F   +  EA+A+L G+++ +Q GV +L + +D L L++ +     C  + A I  DI  L  +F
Subjt:  DAACDFENRRCGIGIVLRNRNGH--LKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSF

Query:  QE--IFHANREFNYLADALAR-TGLYDSPQMWFSDYPDW
        QE  + H NR  N +A  LAR   L +   MW+   P +
Subjt:  QE--IFHANREFNYLADALAR-TGLYDSPQMWFSDYPDW

TrEMBL top hitse value%identityAlignment
A0A5C7GQX3 RNase H domain-containing protein1.8e-0827.12Show/hide
Query:  EWINGYLSEFKSANQRKRSKEQSEQDVCQMISQGQNLI-MHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGV
        EW   +L EF+ ++   + +  S++ V + ++  Q +  ++ DAA + +    GIG+V+RN  G +  +  +   T  S + AEA+A+LEG+++A   G 
Subjt:  EWINGYLSEFKSANQRKRSKEQSEQDVCQMISQGQNLI-MHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGV

Query:  QRLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQ--EIFHANREFNYLADALARTGLYDSPQ-MWFSDYP
            + SD+L ++  I R E  + +   +  DI      F      H  R  N +A  LA+  L +  + +W  D P
Subjt:  QRLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQ--EIFHANREFNYLADALARTGLYDSPQ-MWFSDYP

A0A5C7H0P0 Uncharacterized protein3.0e-0827.43Show/hide
Query:  WINGYLSEFKSANQRKRSKEQSEQDVCQMISQGQNLIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQR
        WI+ + +EF+ AN+    +  S Q   +   +G+  I + DA+    + + G+G+++R+  G    A+   ++  +S    EA A LEG+ +AI  GV  
Subjt:  WINGYLSEFKSANQRKRSKEQSEQDVCQMISQGQNLIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQR

Query:  LTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQEIFH--ANREFNYLADALARTGL-YDSPQMWFSDYP
        + I SD+ ++I ++  +     E   I      L  S   + +    RE N +A  +A+  L  DSP +WF + P
Subjt:  LTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQEIFH--ANREFNYLADALARTGL-YDSPQMWFSDYP

A0A6D2L9H8 Uncharacterized protein6.1e-0933.13Show/hide
Query:  EWINGYLSEFKSANQRKRSKEQSEQDVCQMISQGQNLIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQ
        EW+   L   K     + ++ +  +D         +   H D A + E+R  G+G + +NRN  L     + L    S L +EA+AI E ++ AI  G  
Subjt:  EWINGYLSEFKSANQRKRSKEQSEQDVCQMISQGQNLIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQ

Query:  RLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQEIFHAN--REFNYLADALARTGL
        RL + SDS  LIS I  K R + E   I  DI +L   FQ +F  +  R  N LAD+LA+  L
Subjt:  RLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQEIFHAN--REFNYLADALARTGL

F4NCG6 Reverse transcriptase domain-containing protein1.1e-0729.41Show/hide
Query:  INGYLSEFKSANQRKRSKEQSEQDVCQM-ISQGQNLI----------MHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGM
        I+ ++ +++ AN    S        C++ +  G+NLI          ++ D +   +N +   G V+RN NG +  A+ + L  + S L AEAM +LEG+
Subjt:  INGYLSEFKSANQRKRSKEQSEQDVCQM-ISQGQNLI----------MHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGM

Query:  K--IAIQNGVQRLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQEI--FHANREFNYLADALARTGLYDSPQM--WFSDY
        K  I++QN  +++    D++A+I+ +          A I  D   L G FQE+   H  RE N LAD +A  G +  P++  W   Y
Subjt:  K--IAIQNGVQRLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQEI--FHANREFNYLADALARTGLYDSPQM--WFSDY

J7G0Q7 Non-ltr retroelement reverse transcriptase4.6e-0931.1Show/hide
Query:  QMISQGQNLIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERCTLECATI
        Q  S GQ L ++ D A +F++R  G G ++R+  G L  A  +      SSL AE +AI  G+ + ++  ++ + + SD L  I ++  KERC      +
Subjt:  QMISQGQNLIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERCTLECATI

Query:  FWDIENLRG--SFQEIFHANREFNYLADALAR-TGLYDSPQMWFSDYPDWGGALLSLFSSPRLL
          DI+N     +   I+H  RE N  A A+A+     +   +W  D PDW   L+SL    + L
Subjt:  FWDIENLRG--SFQEIFHANREFNYLADALAR-TGLYDSPQMWFSDYPDWGGALLSLFSSPRLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.0e-0530.77Show/hide
Query:  HVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERC-TLECATIFWDIENLRGS
        + DA    EN RCGIG +LRN +G +     + L    + L AE  A+   +    +   +R+   SD+ AL++++   +   TL+ A    DI+ L   
Subjt:  HVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERC-TLECATIFWDIENLRGS

Query:  FQEI--FHANREFNYLADALARTGL----YDSPQMWFSDYPDW
        F+E+      R  N +AD +AR  +    YD P++ FS  P W
Subjt:  FQEI--FHANREFNYLADALARTGL----YDSPQMWFSDYPDW

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.3e-0531.97Show/hide
Query:  DAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQE
        DAA   E +  G G V+RN         Q         L AEA+A+   ++ A   G+ +L++ SDS  LI+ I  +   T E   I +DI NL   F +
Subjt:  DAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQE

Query:  IFHA--NREFNYLADALARTGL
        +  +   R  N +AD LA++ L
Subjt:  IFHA--NREFNYLADALARTGL

AT4G29090.1 Ribonuclease H-like superfamily protein2.8e-0634.93Show/hide
Query:  HVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMK---IAIQNGVQRLTIF-SDSLALISIIMRKERCTLECATIFWDIENL
        + DA  + +N RCGIG VLRN  G +K    + L    S L AE    LE M+   +++        IF SDS  LI I+   E       TI  D++ L
Subjt:  HVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMK---IAIQNGVQRLTIF-SDSLALISIIMRKERCTLECATIFWDIENL

Query:  RGSFQEI--FHANREFNYLADALARTGL----YDSPQMWFSDYPDW
           F E+      RE N LA+ +AR  L    YD P++ +S  P W
Subjt:  RGSFQEI--FHANREFNYLADALARTGL----YDSPQMWFSDYPDW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAATAAGCCGATTTCTCCTATGGAAATCAAGTGTGAATGGATCAATGGATACTTGTCCGAGTTCAAAAGTGCAAACCAACGGAAACGAAGTAAGGAGCAATCTGA
ACAGGACGTCTGTCAGATGATTTCCCAAGGACAGAATTTGATTATGCATGTTGATGCAGCATGTGATTTTGAGAATCGTCGTTGTGGTATTGGTATAGTGCTCCGTAATC
GGAATGGTCATTTGAAGTGTGCGAAGCAACAAGGTTTGATTACTTTTACTTCTTCGTTATGTGCTGAAGCGATGGCCATACTTGAAGGTATGAAGATAGCAATCCAAAAT
GGAGTGCAGCGTTTGACCATCTTTTCAGATTCTTTAGCTTTGATCTCTATTATTATGCGGAAGGAACGGTGTACACTGGAATGTGCTACAATCTTTTGGGACATTGAGAA
TCTTCGAGGTTCGTTTCAAGAGATCTTTCATGCAAATCGCGAGTTTAATTATTTGGCGGATGCTCTAGCCCGTACAGGGCTGTATGATTCACCACAAATGTGGTTCTCAG
ACTATCCCGATTGGGGTGGTGCTCTTCTTTCGTTGTTCTCTTCTCCAAGGTTGCTGATTTCTTCCGTTGATTCTAGTTCCAAAGTGGCTTTCTTCTTCTGCTGCTTTTCC
TTCTTCCAGCACTCCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATAATAAGCCGATTTCTCCTATGGAAATCAAGTGTGAATGGATCAATGGATACTTGTCCGAGTTCAAAAGTGCAAACCAACGGAAACGAAGTAAGGAGCAATCTGA
ACAGGACGTCTGTCAGATGATTTCCCAAGGACAGAATTTGATTATGCATGTTGATGCAGCATGTGATTTTGAGAATCGTCGTTGTGGTATTGGTATAGTGCTCCGTAATC
GGAATGGTCATTTGAAGTGTGCGAAGCAACAAGGTTTGATTACTTTTACTTCTTCGTTATGTGCTGAAGCGATGGCCATACTTGAAGGTATGAAGATAGCAATCCAAAAT
GGAGTGCAGCGTTTGACCATCTTTTCAGATTCTTTAGCTTTGATCTCTATTATTATGCGGAAGGAACGGTGTACACTGGAATGTGCTACAATCTTTTGGGACATTGAGAA
TCTTCGAGGTTCGTTTCAAGAGATCTTTCATGCAAATCGCGAGTTTAATTATTTGGCGGATGCTCTAGCCCGTACAGGGCTGTATGATTCACCACAAATGTGGTTCTCAG
ACTATCCCGATTGGGGTGGTGCTCTTCTTTCGTTGTTCTCTTCTCCAAGGTTGCTGATTTCTTCCGTTGATTCTAGTTCCAAAGTGGCTTTCTTCTTCTGCTGCTTTTCC
TTCTTCCAGCACTCCAGTTGA
Protein sequenceShow/hide protein sequence
MHNKPISPMEIKCEWINGYLSEFKSANQRKRSKEQSEQDVCQMISQGQNLIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQN
GVQRLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQEIFHANREFNYLADALARTGLYDSPQMWFSDYPDWGGALLSLFSSPRLLISSVDSSSKVAFFFCCFS
FFQHSS