CuGenDBv2

Gene ID	Lcy06g012710
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Mediator of RNA polymerase II transcription subunit 11
Genome location	Chr06:16914224..16928248
RNA-Seq Expression	Lcy06g012710
Synteny	Lcy06g012710
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0016592 - mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019404 - Mediator complex, subunit Med11

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008442051.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]

9.3e-57

95.76

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Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK

Query:  LDGMKQTIDEYQVKMEDA
        LDGMKQTID+YQVKMED+
Subjt:  LDGMKQTIDEYQVKMEDA

XP_022142440.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia]

2.2e-58

98.31

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Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK

Query:  LDGMKQTIDEYQVKMEDA
        LDGMKQTIDEYQVK+EDA
Subjt:  LDGMKQTIDEYQVKMEDA

XP_022927640.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata]

1.7e-58

98.31

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Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK

Query:  LDGMKQTIDEYQVKMEDA
        LDGMKQTIDEYQVKMED+
Subjt:  LDGMKQTIDEYQVKMEDA

XP_022973172.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita maxima]

1.9e-57

97.46

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Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRI NEL CKKLEYMI K
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK

Query:  LDGMKQTIDEYQVKMEDA
        LDGMKQTIDEYQVKMEDA
Subjt:  LDGMKQTIDEYQVKMEDA

XP_023520392.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo]

7.6e-59

99.15

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Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK

Query:  LDGMKQTIDEYQVKMEDA
        LDGMKQTIDEYQVKMEDA
Subjt:  LDGMKQTIDEYQVKMEDA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L450 Mediator of RNA polymerase II transcription subunit 11

4.4e-52

78.57

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Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK----------------------DIQVTLRDEIKSACEYRPFEK
        MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK                      DIQVTLRDEIKSACEYRPFEK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK----------------------DIQVTLRDEIKSACEYRPFEK

Query:  CDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
        CDYSSRITNEL CKKLEYM+SKLDGMKQTID+YQVK+ED+
Subjt:  CDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA

A0A1S3B5G7 Mediator of RNA polymerase II transcription subunit 11

4.5e-57

95.76

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Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK

Query:  LDGMKQTIDEYQVKMEDA
        LDGMKQTID+YQVKMED+
Subjt:  LDGMKQTIDEYQVKMEDA

A0A6J1CKY4 Mediator of RNA polymerase II transcription subunit 11

1.1e-58

98.31

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Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK

Query:  LDGMKQTIDEYQVKMEDA
        LDGMKQTIDEYQVK+EDA
Subjt:  LDGMKQTIDEYQVKMEDA

A0A6J1EPJ1 Mediator of RNA polymerase II transcription subunit 11

8.2e-59

98.31

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Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK

Query:  LDGMKQTIDEYQVKMEDA
        LDGMKQTIDEYQVKMED+
Subjt:  LDGMKQTIDEYQVKMEDA

A0A6J1I6T5 Mediator of RNA polymerase II transcription subunit 11

9.1e-58

97.46

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Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRI NEL CKKLEYMI K
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK

Query:  LDGMKQTIDEYQVKMEDA
        LDGMKQTIDEYQVKMEDA
Subjt:  LDGMKQTIDEYQVKMEDA

SwissProt top hits

e value

%identity

Alignment

Q6ID77 Mediator of RNA polymerase II transcription subunit 11

1.9e-44

74.77

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Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+  +KLEY++++
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK

Query:  LDGMKQTIDEY
        L+ +KQT D Y
Subjt:  LDGMKQTIDEY

Arabidopsis top hits

e value

%identity

Alignment

AT3G01435.1 Expressed protein

1.3e-45

74.77

Show/hide

Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+  +KLEY++++
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISK

Query:  LDGMKQTIDEY
        L+ +KQT D Y
Subjt:  LDGMKQTIDEY

Sequences

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CDS sequence

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ATGCCTATTGTGGATTGGCCACATCGATGTGATTGGATTAACAATTATTGGGAGGAAACTAGAACTAAAAAGGAGAATAGTACTAGTTTAGCTCATGGAGGAGGG
GTACATTTCGTTAATGCTCATGGCACAAAACTATTCACAGATGCAGTGGTTCATCCTCACAATGAAGGGTCAATATATGGAGTGGTAGTCATTGGATTTGACAGA
GTACTTAAAGGTGCAATGGAAATGATAGACCAAACATCATTTACAATTTCTCATCTTTGGCAACAGATGTTCAAGCAATTCTTCAAGCCAGCACAGCTCTTGATG
GATCCACTGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAAAAGAGAATTGTGAGGGTTTTGGAGCTAGCGGGAGGAGTCATGGAAGAGCTTGCCAAT
CCTGCTGGTCCAAGAAAGGAATTTGTCAACAACCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGT
GAGTACCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATCACTAATGAGCTTTCCTGCAAGAAACTGGAATACATGATTTCAAAGTTGGATGGAATGAAACAA
ACCATCGATGAGTATCAAGTGAAAATGGAAGATGCTTGA

mRNA sequence

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Protein sequence

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MPIVDWPHRCDWINNYWEETRTKKENSTSLAHGGGVHFVNAHGTKLFTDAVVHPHNEGSIYGVVVIGFDRVLKGAMEMIDQTSFTISHLWQQMFKQFFKPAQLLM
DPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQ
TIDEYQVKMEDA

Lcy06g012710 (gene) of Sponge gourd (P93075) v1 genome