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Lcy06g012790 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g012790
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
Genome locationChr06:17129790..17131606
RNA-Seq ExpressionLcy06g012790
SyntenyLcy06g012790
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-0431.3Show/hide
Query:  PVVNLGAEAEYEDVPITPTSRLSTAGS-SQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRI
        P+ +LG     +D+  T T+R+S   + S G KR R  +  +  +I+R ++      L +IA WP  Q     + R  + + L A PELT  +R  LMRI
Subjt:  PVVNLGAEAEYEDVPITPTSRLSTAGS-SQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRI

Query:  LFVDPKMTNMMLSVPPTLKLQFLRGLLNERR
        L  +       L VP  +K  +   +L E R
Subjt:  LFVDPKMTNMMLSVPPTLKLQFLRGLLNERR

KAA0041444.1 retrotransposon protein [Cucumis melo var. makuwa]6.4e-0431.82Show/hide
Query:  PPVVNLGAEAEYEDVPITPTSRL-STAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMR
        PP+ N G     +D+  T T+ +      S G KR RA + A+  +I+R  +  +   L  IA WP  Q     + R  V   L A PELT  +R  LMR
Subjt:  PPVVNLGAEAEYEDVPITPTSRL-STAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMR

Query:  ILFVDPKMTNMMLSVPPTLKLQFLRGLLNERR
        IL  +       L VP  +K  +   +L E +
Subjt:  ILFVDPKMTNMMLSVPPTLKLQFLRGLLNERR

XP_022158565.1 uncharacterized protein LOC111025018 [Momordica charantia]5.6e-1633.53Show/hide
Query:  NRASGVGCSVPTEQAESTHGDDEGDCNFQGSQDYYVLVPPVVNLGAEAEYEDVPITPTSRLSTAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIA
        +RA+G     P + A S       D +F+ +QD+Y+  PP+ N   +A  ED+P TPTS+ +   SS G KR R+ Y +E+++++R ++ +Q   L K+A
Subjt:  NRASGVGCSVPTEQAESTHGDDEGDCNFQGSQDYYVLVPPVVNLGAEAEYEDVPITPTSRLSTAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIA

Query:  NWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTLKLQFLRGLLNE
         WPD ++ ++  RR  V + L   P L  ++ V L+ IL  + K +   L VP   K  F   LL +
Subjt:  NWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTLKLQFLRGLLNE

XP_038896380.1 uncharacterized protein LOC120084641 [Benincasa hispida]8.9e-0633.94Show/hide
Query:  TSRLST-AGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTL
        T R S  A SS+G KR R S++AE+++IMR +V +Q T + ++A+W   +   EF RR  V   + +   L +D++V+ + +L  D + T+  L+VP   
Subjt:  TSRLST-AGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTL

Query:  KLQFLRGLL
        + ++   LL
Subjt:  KLQFLRGLL

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein1.1e-0431.3Show/hide
Query:  PVVNLGAEAEYEDVPITPTSRLSTAGS-SQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRI
        P+ +LG     +D+  T T+R+S   + S G KR R  +  +  +I+R ++      L +IA WP  Q     + R  + + L A PELT  +R  LMRI
Subjt:  PVVNLGAEAEYEDVPITPTSRLSTAGS-SQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRI

Query:  LFVDPKMTNMMLSVPPTLKLQFLRGLLNERR
        L  +       L VP  +K  +   +L E R
Subjt:  LFVDPKMTNMMLSVPPTLKLQFLRGLLNERR

A0A5A7TDD6 Retrotransposon protein3.1e-0431.82Show/hide
Query:  PPVVNLGAEAEYEDVPITPTSRL-STAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMR
        PP+ N G     +D+  T T+ +      S G KR RA + A+  +I+R  +  +   L  IA WP  Q     + R  V   L A PELT  +R  LMR
Subjt:  PPVVNLGAEAEYEDVPITPTSRL-STAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMR

Query:  ILFVDPKMTNMMLSVPPTLKLQFLRGLLNERR
        IL  +       L VP  +K  +   +L E +
Subjt:  ILFVDPKMTNMMLSVPPTLKLQFLRGLLNERR

A0A5A7UPP6 Retrotransposon protein6.9e-0430.3Show/hide
Query:  PPVVNLGAEAEYEDVPITPTSRL-STAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMR
        P + + G     +D+  T T+R+     +S G KR RA +  +  +I+R S+      L +I  WP  Q     + R  V   L   PELT  +R  LMR
Subjt:  PPVVNLGAEAEYEDVPITPTSRL-STAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMR

Query:  ILFVDPKMTNMMLSVPPTLKLQFLRGLLNERR
        IL  +       L VP  +K  +   +L E R
Subjt:  ILFVDPKMTNMMLSVPPTLKLQFLRGLLNERR

A0A5A7UXH8 Retrotransposon protein5.3e-0430.3Show/hide
Query:  PPVVNLGAEAEYEDVPITPTSRLSTAGS-SQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMR
        PP+ + G     +D+  T T+R+S   + S G KR R  +  +  +I+R ++  +   L +IA WP  Q     + R  +   L A PELT  +R  LMR
Subjt:  PPVVNLGAEAEYEDVPITPTSRLSTAGS-SQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMR

Query:  ILFVDPKMTNMMLSVPPTLKLQFLRGLLNERR
        IL  +       L V   +K  +   +L E R
Subjt:  ILFVDPKMTNMMLSVPPTLKLQFLRGLLNERR

A0A6J1DW73 uncharacterized protein LOC1110250182.7e-1633.53Show/hide
Query:  NRASGVGCSVPTEQAESTHGDDEGDCNFQGSQDYYVLVPPVVNLGAEAEYEDVPITPTSRLSTAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIA
        +RA+G     P + A S       D +F+ +QD+Y+  PP+ N   +A  ED+P TPTS+ +   SS G KR R+ Y +E+++++R ++ +Q   L K+A
Subjt:  NRASGVGCSVPTEQAESTHGDDEGDCNFQGSQDYYVLVPPVVNLGAEAEYEDVPITPTSRLSTAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIA

Query:  NWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTLKLQFLRGLLNE
         WPD ++ ++  RR  V + L   P L  ++ V L+ IL  + K +   L VP   K  F   LL +
Subjt:  NWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTLKLQFLRGLLNE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCTGTTCTTCGATTTCGGAGGGACATACGAGTTCAGATCTGTGACCCCCCTCTCAGATCTGTCTTCTCCTTGCTCCCTCTTCATGAATCTGAGCGATAATCGAGC
GAGTGGAGTGGGGTGCTCTGTTCCGACAGAACAAGCAGAAAGCACTCACGGGGACGATGAGGGCGACTGCAACTTCCAAGGGTCGCAGGATTATTACGTCCTAGTTCCTC
CGGTCGTTAATCTGGGCGCCGAGGCCGAGTATGAGGACGTCCCTATCACACCCACCAGCCGACTGAGCACAGCAGGGTCCTCGCAGGGACAAAAGAGGAGCCGGGCATCG
TACGAAGCAGAAGTGCTTGAAATAATGAGGAAGTCAGTGAACCTGCAAGAGACTCCGTTGACGAAAATTGCAAACTGGCCTGACACGCAGGACACAAGGGAGTTCAAGCG
GCGTGACACAGTGGCAGAGATGCTCCTGGCGCAACCAGAGCTAACAGACGACGAGAGAGTGTCCTTAATGCGTATTCTCTTCGTCGACCCCAAAATGACTAACATGATGC
TCTCTGTCCCACCGACCCTCAAGCTTCAATTCCTCCGAGGCCTACTGAATGAACGACGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTCTGTTCTTCGATTTCGGAGGGACATACGAGTTCAGATCTGTGACCCCCCTCTCAGATCTGTCTTCTCCTTGCTCCCTCTTCATGAATCTGAGCGATAATCGAGC
GAGTGGAGTGGGGTGCTCTGTTCCGACAGAACAAGCAGAAAGCACTCACGGGGACGATGAGGGCGACTGCAACTTCCAAGGGTCGCAGGATTATTACGTCCTAGTTCCTC
CGGTCGTTAATCTGGGCGCCGAGGCCGAGTATGAGGACGTCCCTATCACACCCACCAGCCGACTGAGCACAGCAGGGTCCTCGCAGGGACAAAAGAGGAGCCGGGCATCG
TACGAAGCAGAAGTGCTTGAAATAATGAGGAAGTCAGTGAACCTGCAAGAGACTCCGTTGACGAAAATTGCAAACTGGCCTGACACGCAGGACACAAGGGAGTTCAAGCG
GCGTGACACAGTGGCAGAGATGCTCCTGGCGCAACCAGAGCTAACAGACGACGAGAGAGTGTCCTTAATGCGTATTCTCTTCGTCGACCCCAAAATGACTAACATGATGC
TCTCTGTCCCACCGACCCTCAAGCTTCAATTCCTCCGAGGCCTACTGAATGAACGACGGTGA
Protein sequenceShow/hide protein sequence
MCLFFDFGGTYEFRSVTPLSDLSSPCSLFMNLSDNRASGVGCSVPTEQAESTHGDDEGDCNFQGSQDYYVLVPPVVNLGAEAEYEDVPITPTSRLSTAGSSQGQKRSRAS
YEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTLKLQFLRGLLNERR