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Lcy06g012830 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g012830
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr06:17359879..17360346
RNA-Seq ExpressionLcy06g012830
SyntenyLcy06g012830
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]8.6e-1040.23Show/hide
Query:  DVREPIKRATNI-----KAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVKGEGNKIDCMFGVELRETHSSKGIMKEKKSEFR
        D+ E ++   N+     K G M  + WI V+Y+KLPDFCY  GR+GH VQ+C+  G+  +    FGV LR++ +S+ I K ++ E R
Subjt:  DVREPIKRATNI-----KAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVKGEGNKIDCMFGVELRETHSSKGIMKEKKSEFR

XP_028071384.1 uncharacterized protein LOC114273772 [Camellia sinensis]6.1e-0834.48Show/hide
Query:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVK---GEGNKIDCM-FGVELR-ETHSSKG
        G T+ +R+ +DVR+P++R   +   ++ + +W+   Y++LP +CYF GRLGH+ ++C+ K    +G ++D + +G  LR +   SKG
Subjt:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVK---GEGNKIDCM-FGVELR-ETHSSKG

XP_028122006.1 uncharacterized protein LOC114319195 [Camellia sinensis]1.2e-0836.78Show/hide
Query:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVK---GEGNKIDCM-FGVELR-ETHSSKG
        G T+R+R+ +DVR+P++R   + A +  + +W+   Y++LP +CYF GRLGH+ ++C+ K    +G+++D + +G  LR +   SKG
Subjt:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVK---GEGNKIDCM-FGVELR-ETHSSKG

XP_028124075.1 uncharacterized protein LOC114321128 [Camellia sinensis]9.5e-0937.93Show/hide
Query:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVK---GEGNKIDCM-FGVELR-ETHSSKG
        G T+R+R+ +DVR+P++R   + A +  D +W+   Y++LP +CYF GRLGH+ ++C+ K    +G ++D + +G  LR +   SKG
Subjt:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVK---GEGNKIDCM-FGVELR-ETHSSKG

XP_035547259.1 uncharacterized protein LOC118348856 [Juglans regia]2.1e-0844.26Show/hide
Query:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVKG
        GE LR+R+R+++ +P+ R   +K G  G  VWI   Y++LP+FCY  G+LGH  + CE+ G
Subjt:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVKG

TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein1.9e-1055.56Show/hide
Query:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVKGEG
        GE L+VR ++DV++ +   TNIK GAM  +  I VTY+KL DFCY  G LGH +Q+CEVK EG
Subjt:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVKGEG

A0A5D3C0K2 Reverse transcriptase4.1e-1040.23Show/hide
Query:  DVREPIKRATNI-----KAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVKGEGNKIDCMFGVELRETHSSKGIMKEKKSEFR
        D+ E ++   N+     K G M  + WI V+Y+KLPDFCY  GR+GH VQ+C+  G+  +    FGV LR++ +S+ I K ++ E R
Subjt:  DVREPIKRATNI-----KAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVKGEGNKIDCMFGVELRETHSSKGIMKEKKSEFR

A0A6P9EID8 uncharacterized protein LOC1183488561.0e-0844.26Show/hide
Query:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVKG
        GE LR+R+R+++ +P+ R   +K G  G  VWI   Y++LP+FCY  G+LGH  + CE+ G
Subjt:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVKG

A0A803NE34 Uncharacterized protein1.7e-0844.62Show/hide
Query:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVKGEGNK
        GE +RV+I  D+ +P++R   I AG   +K WI   Y++L DFCY+ GRLGHT + C ++GE ++
Subjt:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVKGEGNK

A0A803PLR3 Uncharacterized protein3.9e-0837.97Show/hide
Query:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKC----EVKGEGNKIDCMFGVELR
        G  LR+R+++DV +P++R  NIK   + DK W+   Y++LP++C   G LGH  QKC    E+   G + +  +G EL+
Subjt:  GETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKC----EVKGEGNKIDCMFGVELR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGAGAAACGCTAAGAGTCAGAATAAGAATGGATGTAAGAGAACCAATCAAGAGGGCAACAAACATAAAGGCAGGGGCGATGGGCGACAAGGTTTGGATATCGGT
TACATACAAAAAGTTACCTGATTTCTGCTACTTTTACGGAAGGTTGGGTCACACCGTTCAGAAATGCGAAGTTAAAGGGGAAGGTAACAAGATTGATTGTATGTTTGGAG
TGGAATTGAGGGAAACCCATAGCAGCAAAGGGATAATGAAAGAAAAGAAATCGGAGTTTAGACCTTTTCTCTGGGAGAGGTAG
mRNA sequenceShow/hide mRNA sequence
CACAAATCAAGGCCTAAATAACTCCCTTTTGGAGAGTTATCACTCTTGGCAATTCGATAGGAACATTCAAAGCAGCGAATTCAGATGAATCGGGGAGAATGAAGGGAGAA
ACGCTAAGAGTCAGAATAAGAATGGATGTAAGAGAACCAATCAAGAGGGCAACAAACATAAAGGCAGGGGCGATGGGCGACAAGGTTTGGATATCGGTTACATACAAAAA
GTTACCTGATTTCTGCTACTTTTACGGAAGGTTGGGTCACACCGTTCAGAAATGCGAAGTTAAAGGGGAAGGTAACAAGATTGATTGTATGTTTGGAGTGGAATTGAGGG
AAACCCATAGCAGCAAAGGGATAATGAAAGAAAAGAAATCGGAGTTTAGACCTTTTCTCTGGGAGAGGTAGAGGGAAAGGAAGATTCGATAGAGAATGGAGACCAGAAGG
AAGAGAGGACAGCGGCGAGAGGTGGAGT
Protein sequenceShow/hide protein sequence
MKGETLRVRIRMDVREPIKRATNIKAGAMGDKVWISVTYKKLPDFCYFYGRLGHTVQKCEVKGEGNKIDCMFGVELRETHSSKGIMKEKKSEFRPFLWER