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Lcy06g013230 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g013230
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
Genome locationChr06:18934176..18934691
RNA-Seq ExpressionLcy06g013230
SyntenyLcy06g013230
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-2038.89Show/hide
Query:  ENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAMWPTTKEEMDQKRRKELYTELQTIP
        E++M++  +DF +P+P  L+P SGE   +TPT+ A  AG+  SR  ++ R    ++ +      + T+++I KIA W   K E++    K LY +LQTIP
Subjt:  ENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAMWPTTKEEMDQKRRKELYTELQTIP

Query:  GVSLEDDLVITRALLVDSSMLTHFMDFSLEWKYDYCMQVLGRTP
        G+ ++D L++  +LL D +ML  F+D+  EWKY  CM++LGR P
Subjt:  GVSLEDDLVITRALLVDSSMLTHFMDFSLEWKYDYCMQVLGRTP

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-2340Show/hide
Query:  GGRARTPIEIAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAG-ARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAMWPT
        GGR +TP+EI  ++    + E++M++  +DF +P+P  L+P SGE   +TPT+ A  AG  RPS+   + R    ++ +      + T+++I KIA W  
Subjt:  GGRARTPIEIAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAG-ARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAMWPT

Query:  TKEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDFSLEWKYDYCMQVLGRTP
         K E++    K LYTELQTIPG+ ++D L++  +LL D +ML  F+D+  EWKY  CM++LGR P
Subjt:  TKEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDFSLEWKYDYCMQVLGRTP

KAA0067273.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-1537.09Show/hide
Query:  GGRARTPIE----IAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAM
        GGR +TPIE    IA ++E     E++M++  +DF +P+P  L+P SGE   +TPT+ A   G+  S+  ++ R   E++ +      + T+++I KIA 
Subjt:  GGRARTPIE----IAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAM

Query:  WPTTKEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDF
        W   K E++    K LY ELQTIPG+ ++D L++  +LL D  ML  F+D+
Subjt:  WPTTKEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDF

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]1.0e-1535.37Show/hide
Query:  GGRARTPIEIAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAMWPTT
        GGR +TP+E++ ++    + E++M++  +DF +P+P  L+P SGE   +TPT+    AG+  SR  ++ R    ++ +      + T+++I KIA W   
Subjt:  GGRARTPIEIAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAMWPTT

Query:  KEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDF
        K E++    K LY ELQTIPG+ ++D L++  +LL D +ML  F+D+
Subjt:  KEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDF

XP_008460440.1 PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]1.0e-1537.09Show/hide
Query:  GGRARTPIE----IAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAM
        GGR +TPIE    IA ++E     E++M++  +DF +P+P  L+P SGE   +TPT+ A   G+  S+  ++ R   E++ +      + T+++I KIA 
Subjt:  GGRARTPIE----IAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAM

Query:  WPTTKEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDF
        W   K E++    K LY ELQTIPG+ ++D L++  +LL D  ML  F+D+
Subjt:  WPTTKEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDF

TrEMBL top hitse value%identityAlignment
A0A1S3CC17 uncharacterized protein LOC1034992485.1e-1637.09Show/hide
Query:  GGRARTPIE----IAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAM
        GGR +TPIE    IA ++E     E++M++  +DF +P+P  L+P SGE   +TPT+ A   G+  S+  ++ R   E++ +      + T+++I KIA 
Subjt:  GGRARTPIE----IAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAM

Query:  WPTTKEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDF
        W   K E++    K LY ELQTIPG+ ++D L++  +LL D  ML  F+D+
Subjt:  WPTTKEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDF

A0A5A7U7F7 Retrotransposon protein2.0e-2038.89Show/hide
Query:  ENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAMWPTTKEEMDQKRRKELYTELQTIP
        E++M++  +DF +P+P  L+P SGE   +TPT+ A  AG+  SR  ++ R    ++ +      + T+++I KIA W   K E++    K LY +LQTIP
Subjt:  ENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAMWPTTKEEMDQKRRKELYTELQTIP

Query:  GVSLEDDLVITRALLVDSSMLTHFMDFSLEWKYDYCMQVLGRTP
        G+ ++D L++  +LL D +ML  F+D+  EWKY  CM++LGR P
Subjt:  GVSLEDDLVITRALLVDSSMLTHFMDFSLEWKYDYCMQVLGRTP

A0A5A7VG45 Retrotransposon protein5.1e-2440Show/hide
Query:  GGRARTPIEIAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAG-ARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAMWPT
        GGR +TP+EI  ++    + E++M++  +DF +P+P  L+P SGE   +TPT+ A  AG  RPS+   + R    ++ +      + T+++I KIA W  
Subjt:  GGRARTPIEIAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAG-ARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAMWPT

Query:  TKEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDFSLEWKYDYCMQVLGRTP
         K E++    K LYTELQTIPG+ ++D L++  +LL D +ML  F+D+  EWKY  CM++LGR P
Subjt:  TKEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDFSLEWKYDYCMQVLGRTP

A0A5A7VGQ0 Retrotransposon protein5.1e-1637.09Show/hide
Query:  GGRARTPIE----IAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAM
        GGR +TPIE    IA ++E     E++M++  +DF +P+P  L+P SGE   +TPT+ A   G+  S+  ++ R   E++ +      + T+++I KIA 
Subjt:  GGRARTPIE----IAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAM

Query:  WPTTKEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDF
        W   K E++    K LY ELQTIPG+ ++D L++  +LL D  ML  F+D+
Subjt:  WPTTKEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDF

A0A5D3C7T4 Uncharacterized protein5.1e-1635.37Show/hide
Query:  GGRARTPIEIAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAMWPTT
        GGR +TP+E++ ++    + E++M++  +DF +P+P  L+P SGE   +TPT+    AG+  SR  ++ R    ++ +      + T+++I KIA W   
Subjt:  GGRARTPIEIAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAMWPTT

Query:  KEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDF
        K E++    K LY ELQTIPG+ ++D L++  +LL D +ML  F+D+
Subjt:  KEEMDQKRRKELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGGAAGAGCACGCACACCCATTGAAATTGCCCCAGAATCGGAACCTATGGCCGACTTGGAAAACGAAATGAACGTCGAGTACGATGATTTTTACGTCCCCAGTCC
ACCTATTCTTGATCCCACTTCGGGGGAGAAGAACTGCACTACCCCGACAGCGAAAGCTGGAGCTGCTGGTGCTAGGCCATCACGAACACCACAGAGGAGCAGACTGTCTA
TGGAGAATGTGGCTGAGGTATTAGAAAATGGATTCCAGATGACTGCACAACAGATTGAGAAGATTGCCATGTGGCCCACGACCAAGGAGGAGATGGATCAAAAGCGTCGC
AAGGAGCTGTATACGGAGCTGCAGACCATACCGGGAGTTTCGCTGGAGGACGACTTAGTCATCACACGGGCTTTACTGGTTGATTCGAGCATGCTGACACACTTCATGGA
CTTCTCTCTAGAGTGGAAGTATGACTATTGCATGCAGGTGCTTGGTAGGACACCTCGACAGCCGAGTCAGCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGGGAAGAGCACGCACACCCATTGAAATTGCCCCAGAATCGGAACCTATGGCCGACTTGGAAAACGAAATGAACGTCGAGTACGATGATTTTTACGTCCCCAGTCC
ACCTATTCTTGATCCCACTTCGGGGGAGAAGAACTGCACTACCCCGACAGCGAAAGCTGGAGCTGCTGGTGCTAGGCCATCACGAACACCACAGAGGAGCAGACTGTCTA
TGGAGAATGTGGCTGAGGTATTAGAAAATGGATTCCAGATGACTGCACAACAGATTGAGAAGATTGCCATGTGGCCCACGACCAAGGAGGAGATGGATCAAAAGCGTCGC
AAGGAGCTGTATACGGAGCTGCAGACCATACCGGGAGTTTCGCTGGAGGACGACTTAGTCATCACACGGGCTTTACTGGTTGATTCGAGCATGCTGACACACTTCATGGA
CTTCTCTCTAGAGTGGAAGTATGACTATTGCATGCAGGTGCTTGGTAGGACACCTCGACAGCCGAGTCAGCCCTGA
Protein sequenceShow/hide protein sequence
MGGRARTPIEIAPESEPMADLENEMNVEYDDFYVPSPPILDPTSGEKNCTTPTAKAGAAGARPSRTPQRSRLSMENVAEVLENGFQMTAQQIEKIAMWPTTKEEMDQKRR
KELYTELQTIPGVSLEDDLVITRALLVDSSMLTHFMDFSLEWKYDYCMQVLGRTPRQPSQP