; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy06g013290 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g013290
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr06:19241874..19244299
RNA-Seq ExpressionLcy06g013290
SyntenyLcy06g013290
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN84133.1 hypothetical protein VITISV_000111 [Vitis vinifera]5.1e-2837.33Show/hide
Query:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLVEGASIFSS------LWKVKIPKKVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQE
        +RW VV K +E+GGLG GN+ L N ALLGKWLW    EG++++        +W  ++P KVK F W V H  VNT D +Q R     L    C+LC K  
Subjt:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLVEGASIFSS------LWKVKIPKKVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQE

Query:  EDLDYLLWDCPFVCSIWSQFF---RTFGVASARNFDCSSTFEEVLWPPTFRDRGRVLWQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWA
        E  D++   C     +W + F   +   V     FD  S   +     +F+ RG  LWQ+   A++   W ERN+RIF    +++  LW +I F  S WA
Subjt:  EDLDYLLWDCPFVCSIWSQFF---RTFGVASARNFDCSSTFEEVLWPPTFRDRGRVLWQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWA

Query:  SISKLFCNYQLGLIILD
          SK+F    L +I LD
Subjt:  SISKLFCNYQLGLIILD

RVW27818.1 hypothetical protein CK203_107068 [Vitis vinifera]1.9e-2732.18Show/hide
Query:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------CS--------LVEGASIFSS---------------------LWKVKIPK
        +RW VV++ +ELGGLG G   + N ALLGKWLW                  CS         +    +FS                      LW  K+P 
Subjt:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------CS--------LVEGASIFSS---------------------LWKVKIPK

Query:  KVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVASARNFDCSSTFEEVLWPPTFRD-----RGRVL
        KVK  AW V HG VNT D +Q R        QWC+LC+   E +D+L   CP    +W + F   G+     +    + E++L   TF+      RG+ L
Subjt:  KVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVASARNFDCSSTFEEVLWPPTFRD-----RGRVL

Query:  WQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW
        WQ     ++W  W ERN+RIF    ++   LW  I F  S WAS ++ F    L ++ L+W
Subjt:  WQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW

RVW46854.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]3.1e-2529.35Show/hide
Query:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------------------------CSLVEGASIFSS-------------------
        +RW VVS+ +E GGLG G + L N ALLGKWLW                                    C     A +F                     
Subjt:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------------------------CSLVEGASIFSS-------------------

Query:  ------------------------LWKVKIPKKVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVA
                                LW  K+P KVK  AW V HG VNT D +Q R     L  QWC+LC+   E +D+L   CP    +W++ F+  G+ 
Subjt:  ------------------------LWKVKIPKKVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVA

Query:  SARNFDCSSTFEEVLWPPTFRD-----RGRVLWQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW
           ++    +FE++L    F+      RG+ LWQ     ++W  W ERN+RIF    +S   LW  I F  + WAS S  F    L ++ L+W
Subjt:  SARNFDCSSTFEEVLWPPTFRD-----RGRVLWQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW

RVW50733.1 putative ribonuclease H protein [Vitis vinifera]2.5e-2731.5Show/hide
Query:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------------------------CSLVEGASIF---------------------
        +RW VVS+ +ELGGLG G + L N ALLGKWLW                                    C     A +F                     
Subjt:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------------------------CSLVEGASIF---------------------

Query:  --SSLWKVKIPKKVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVASARNFDCSSTFEEVLWPPTF
            LW  K+P KVK  AW V HG VNT D +Q R     L  QWC+LC+   E +D+L   CP    +W++ F+  G+    ++    +FE++L    F
Subjt:  --SSLWKVKIPKKVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVASARNFDCSSTFEEVLWPPTF

Query:  RD-----RGRVLWQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW
        +      RG+ LWQ     ++W  W ERN+RIF    +S   LW  I F  + WAS    F    L ++ L+W
Subjt:  RD-----RGRVLWQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW

RVW93876.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]8.4e-3134Show/hide
Query:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------------------------CSLVEGASIFSSLWKVKIPKKVKFFAWKVLH
        +RW VVS+ +ELGGLG G   + N ALLGKWLW                                    C     A +F  LW  K+P KVK  AW V H
Subjt:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------------------------CSLVEGASIFSSLWKVKIPKKVKFFAWKVLH

Query:  GWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVASARNFDCSSTFEEVLWPPTFRD-----RGRVLWQSFLFAILWG
        G VNT D +Q R     L  QWC+LC+   E +D++   CP    IW + F   G+     +    + E++L   TF+      RG+ LWQ     ++W 
Subjt:  GWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVASARNFDCSSTFEEVLWPPTFRD-----RGRVLWQSFLFAILWG

Query:  TWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW
         W ERN+RIF    ++   LW  IRF  S WA  ++ F    L ++ L+W
Subjt:  TWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW

TrEMBL top hitse value%identityAlignment
A0A438CX86 Uncharacterized protein9.3e-2832.18Show/hide
Query:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------CS--------LVEGASIFSS---------------------LWKVKIPK
        +RW VV++ +ELGGLG G   + N ALLGKWLW                  CS         +    +FS                      LW  K+P 
Subjt:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------CS--------LVEGASIFSS---------------------LWKVKIPK

Query:  KVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVASARNFDCSSTFEEVLWPPTFRD-----RGRVL
        KVK  AW V HG VNT D +Q R        QWC+LC+   E +D+L   CP    +W + F   G+     +    + E++L   TF+      RG+ L
Subjt:  KVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVASARNFDCSSTFEEVLWPPTFRD-----RGRVL

Query:  WQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW
        WQ     ++W  W ERN+RIF    ++   LW  I F  S WAS ++ F    L ++ L+W
Subjt:  WQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW

A0A438EGK9 Transposon TX1 uncharacterized 149 kDa protein1.5e-2529.35Show/hide
Query:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------------------------CSLVEGASIFSS-------------------
        +RW VVS+ +E GGLG G + L N ALLGKWLW                                    C     A +F                     
Subjt:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------------------------CSLVEGASIFSS-------------------

Query:  ------------------------LWKVKIPKKVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVA
                                LW  K+P KVK  AW V HG VNT D +Q R     L  QWC+LC+   E +D+L   CP    +W++ F+  G+ 
Subjt:  ------------------------LWKVKIPKKVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVA

Query:  SARNFDCSSTFEEVLWPPTFRD-----RGRVLWQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW
           ++    +FE++L    F+      RG+ LWQ     ++W  W ERN+RIF    +S   LW  I F  + WAS S  F    L ++ L+W
Subjt:  SARNFDCSSTFEEVLWPPTFRD-----RGRVLWQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW

A0A438ESM4 Putative ribonuclease H protein1.2e-2731.5Show/hide
Query:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------------------------CSLVEGASIF---------------------
        +RW VVS+ +ELGGLG G + L N ALLGKWLW                                    C     A +F                     
Subjt:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------------------------CSLVEGASIF---------------------

Query:  --SSLWKVKIPKKVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVASARNFDCSSTFEEVLWPPTF
            LW  K+P KVK  AW V HG VNT D +Q R     L  QWC+LC+   E +D+L   CP    +W++ F+  G+    ++    +FE++L    F
Subjt:  --SSLWKVKIPKKVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVASARNFDCSSTFEEVLWPPTF

Query:  RD-----RGRVLWQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW
        +      RG+ LWQ     ++W  W ERN+RIF    +S   LW  I F  + WAS    F    L ++ L+W
Subjt:  RD-----RGRVLWQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW

A0A438F1Z0 LINE-1 retrotransposable element ORF2 protein9.7e-2527.61Show/hide
Query:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------------------------CSLVEGASIFSS-------------------
        +RW VVS+  E+GGLG G   + N ALLGKWLW                                    C     A +F                     
Subjt:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------------------------CSLVEGASIFSS-------------------

Query:  ----------------------------LWKVKIPKKVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRT
                                    LW  K+  KVK  AW V HG VNT D +Q R     L  QWC+LC+   E +D+L + CP    +W + F  
Subjt:  ----------------------------LWKVKIPKKVKFFAWKVLHGWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRT

Query:  FGVASARNFDCSSTFEEVLWPPTFRD-----RGRVLWQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW
         GV     +    + E++L   +F+      RG++LWQ     ++W  W ERN+RIF    ++   +W  IRF  S WAS ++ F    L ++ ++W
Subjt:  FGVASARNFDCSSTFEEVLWPPTFRD-----RGRVLWQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW

A0A438IAY6 Transposon TX1 uncharacterized 149 kDa protein4.1e-3134Show/hide
Query:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------------------------CSLVEGASIFSSLWKVKIPKKVKFFAWKVLH
        +RW VVS+ +ELGGLG G   + N ALLGKWLW                                    C     A +F  LW  K+P KVK  AW V H
Subjt:  MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW------------------------------------CSLVEGASIFSSLWKVKIPKKVKFFAWKVLH

Query:  GWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVASARNFDCSSTFEEVLWPPTFRD-----RGRVLWQSFLFAILWG
        G VNT D +Q R     L  QWC+LC+   E +D++   CP    IW + F   G+     +    + E++L   TF+      RG+ LWQ     ++W 
Subjt:  GWVNTQDWIQ-RFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVASARNFDCSSTFEEVLWPPTFRD-----RGRVLWQSFLFAILWG

Query:  TWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW
         W ERN+RIF    ++   LW  IRF  S WA  ++ F    L ++ L+W
Subjt:  TWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDW

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657504.6e-0829.55Show/hide
Query:  ASIFSSLWKVKIPKKVKFFAWKVLHGWVNTQDWIQRFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVASARNFDCSSTFEEVLWPPT
        AS F+ LWKV++P++VK F W V +  V T++  +R    +  +  C +C+   E + ++L DCP    IW    R       + F   S FE +     
Subjt:  ASIFSSLWKVKIPKKVKFFAWKVLHGWVNTQDWIQRFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIWSQFFRTFGVASARNFDCSSTFEEVLWPPT

Query:  FRDRG---RVLWQSFLFAILWGTWLERNSRIF
          DR     + W +    I+W  W  R   IF
Subjt:  FRDRG---RVLWQSFLFAILWGTWLERNSRIF

Arabidopsis top hitse value%identityAlignment
AT3G25270.1 Ribonuclease H-like superfamily protein2.5e-0926.92Show/hide
Query:  ASIFSSLWKVKIPKKVKFFAWKVLHGWVNTQDWIQRFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIW------SQFFRTFGVASARNFDCSSTFEE
        A I + +WK+K   K+K F WK+L G + T D ++R    +     C  C +++E   +L +DC +   +W       Q  RT G+          T  E
Subjt:  ASIFSSLWKVKIPKKVKFFAWKVLHGWVNTQDWIQRFSSFVLRAQWCVLCRKQEEDLDYLLWDCPFVCSIW------SQFFRTFGVASARNFDCSSTFEE

Query:  VLWPPTFRDRGRVLWQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQW
        +L      +R   L+   ++ ILW  W  RN  +F+    S        R +V +W
Subjt:  VLWPPTFRDRGRVLWQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTGGTATGTGGTTTCTAAGGATGAGGAGTTGGGGGGATTAGGCATTGGTAACTTGAAGCTTCACAATGAGGCCCTTTTAGGGAAATGGTTGTGGTGCTCC
TTGGTAGAAGGAGCCTCCATTTTCTCTTCTCTGTGGAAGGTCAAAATTCCCAAGAAAGTGAAGTTCTTTGCCTGGAAAGTTTTACATGGTTGGGTGAATACTCAG
GATTGGATTCAAAGGTTCTCCTCGTTTGTGTTGCGGGCGCAGTGGTGTGTCCTTTGCAGGAAGCAGGAGGAAGACTTGGATTACTTGCTTTGGGATTGTCCTTTT
GTTTGCTCTATTTGGAGTCAATTCTTCAGGACTTTTGGTGTTGCTTCGGCTCGTAACTTTGACTGTTCCTCTACTTTTGAGGAAGTTCTTTGGCCTCCCACATTT
CGTGACAGAGGGAGAGTTCTTTGGCAGTCTTTCCTTTTTGCTATTTTATGGGGTACTTGGCTTGAGAGAAATAGTAGAATTTTTAGAGGGGTGGAGAAATCCACG
ATTGAGCTGTGGGGGACGATTAGGTTTAATGTGTCTCAATGGGCTTCGATTTCTAAGCTCTTTTGTAATTATCAGCTAGGTCTTATTATTTTAGATTGGGACTCG
TTCTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGTGGTATGTGGTTTCTAAGGATGAGGAGTTGGGGGGATTAGGCATTGGTAACTTGAAGCTTCACAATGAGGCCCTTTTAGGGAAATGGTTGTGGTGCTCC
TTGGTAGAAGGAGCCTCCATTTTCTCTTCTCTGTGGAAGGTCAAAATTCCCAAGAAAGTGAAGTTCTTTGCCTGGAAAGTTTTACATGGTTGGGTGAATACTCAG
GATTGGATTCAAAGGTTCTCCTCGTTTGTGTTGCGGGCGCAGTGGTGTGTCCTTTGCAGGAAGCAGGAGGAAGACTTGGATTACTTGCTTTGGGATTGTCCTTTT
GTTTGCTCTATTTGGAGTCAATTCTTCAGGACTTTTGGTGTTGCTTCGGCTCGTAACTTTGACTGTTCCTCTACTTTTGAGGAAGTTCTTTGGCCTCCCACATTT
CGTGACAGAGGGAGAGTTCTTTGGCAGTCTTTCCTTTTTGCTATTTTATGGGGTACTTGGCTTGAGAGAAATAGTAGAATTTTTAGAGGGGTGGAGAAATCCACG
ATTGAGCTGTGGGGGACGATTAGGTTTAATGTGTCTCAATGGGCTTCGATTTCTAAGCTCTTTTGTAATTATCAGCTAGGTCTTATTATTTTAGATTGGGACTCG
TTCTTGTAG
Protein sequenceShow/hide protein sequence
MRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLVEGASIFSSLWKVKIPKKVKFFAWKVLHGWVNTQDWIQRFSSFVLRAQWCVLCRKQEEDLDYLLWDCPF
VCSIWSQFFRTFGVASARNFDCSSTFEEVLWPPTFRDRGRVLWQSFLFAILWGTWLERNSRIFRGVEKSTIELWGTIRFNVSQWASISKLFCNYQLGLIILDWDS
FL