; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy06g013430 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g013430
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description40S ribosomal protein S11
Genome locationChr06:19936502..19941522
RNA-Seq ExpressionLcy06g013430
SyntenyLcy06g013430
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019979 - Ribosomal protein S17, conserved site
IPR032440 - 40S ribosomal protein S11, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KJB23701.1 hypothetical protein B456_004G110600 [Gossypium raimondii]3.8e-4082.18Show/hide
Query:  LIPQGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILAS
        L P+GTYIDKKCPFTG VS+RG ILAGT + AKM+RTIIVR NYLHY+ KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A 
Subjt:  LIPQGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILAS

Query:  S
        S
Subjt:  S

XP_022937629.1 40S ribosomal protein S11-like [Cucurbita moschata]5.0e-4086.73Show/hide
Query:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        +GTYIDKKCPFTGTVSIRG ILAGT + AKMVRTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

XP_022952178.1 40S ribosomal protein S11-like [Cucurbita moschata]5.0e-4086.73Show/hide
Query:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        +GTYIDKKCPFTGTVSIRG ILAGT + AKMVRTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

XP_022965991.1 40S ribosomal protein S11-like [Cucurbita maxima]5.0e-4086.73Show/hide
Query:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        +GTYIDKKCPFTGTVSIRG ILAGT + AKMVRTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

XP_023522849.1 40S ribosomal protein S11-like, partial [Cucurbita pepo subsp. pepo]5.0e-4085Show/hide
Query:  IPQGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        +  GTYIDKKCPFTGTVSIRG ILAGT + AKMVRTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  IPQGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

TrEMBL top hitse value%identityAlignment
A0A0D2R2M6 Ribosomal_S17_N domain-containing protein1.8e-4082.18Show/hide
Query:  LIPQGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILAS
        L P+GTYIDKKCPFTG VS+RG ILAGT + AKM+RTIIVR NYLHY+ KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A 
Subjt:  LIPQGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILAS

Query:  S
        S
Subjt:  S

A0A6J1CQ61 40S ribosomal protein S11-like2.4e-4086.73Show/hide
Query:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        +GTYIDKKCPFTGTVSIRG ILAGT + AKMVRTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

A0A6J1FBR2 40S ribosomal protein S11-like2.4e-4086.73Show/hide
Query:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        +GTYIDKKCPFTGTVSIRG ILAGT + AKMVRTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

A0A6J1HN55 40S ribosomal protein S11-like2.4e-4086.73Show/hide
Query:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        +GTYIDKKCPFTGTVSIRG ILAGT + AKMVRTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

A0A6J1HZI1 40S ribosomal protein S11-like2.4e-4086.73Show/hide
Query:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        +GTYIDKKCPFTGTVSIRG ILAGT + AKMVRTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

SwissProt top hitse value%identityAlignment
P16181 40S ribosomal protein S11-14.0e-4081.44Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        G Y+DKKCPFTGTVSIRG ILAGT + AKM RTIIVR +YLH+V KYQRYEKRHSNIPAH++PCFRVK GDH+IIGQCRPLS TVRFNVLKVI A S
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

P17093 40S ribosomal protein S116.8e-4081.63Show/hide
Query:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        +GTYIDKKCPFTG VSIRG ILAGT + AKM RTIIVR NYLH++ KYQRYEKRHSNIPAH++P FRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

P25460 40S ribosomal protein S114.7e-4182.65Show/hide
Query:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        +GTYIDKKCPFTGTVSIRG I+AGT + AKM RTIIVR NYLH+V KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNV+KVI A S
Subjt:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

P42733 40S ribosomal protein S11-35.2e-4082.47Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        G YID KCPFTGTVSIRG ILAGT + AKM RTIIVR NYLH+V KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A +
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

Q9M5M1 40S ribosomal protein S112.7e-4184.54Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        GTYIDKKCPFTGTVSIRG ILAGT + AKM RTIIVR NYLH++ KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

Arabidopsis top hitse value%identityAlignment
AT2G43350.1 glutathione peroxidase 31.6e-0737.76Show/hide
Query:  IVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSN-TVRFNVLKVILASSP--QVIDVNGDYATPLYKFLKSSKGGLFGDAIKW
        +  GNY      Y +Y+ +   I A   PC +         G   P SN  ++  V  +  A  P    I+VNG    PLY FLK  KGGLFGDAIKW
Subjt:  IVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSN-TVRFNVLKVILASSP--QVIDVNGDYATPLYKFLKSSKGGLFGDAIKW

AT3G48930.1 Nucleic acid-binding, OB-fold-like protein2.8e-4181.44Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        G Y+DKKCPFTGTVSIRG ILAGT + AKM RTIIVR +YLH+V KYQRYEKRHSNIPAH++PCFRVK GDH+IIGQCRPLS TVRFNVLKVI A S
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

AT4G11600.1 glutathione peroxidase 68.3e-0982.76Show/hide
Query:  IDVNGDYATPLYKFLKSSKGGLFGDAIKW
        +DVNGD A P+YKFLKSSKGGLFGD IKW
Subjt:  IDVNGDYATPLYKFLKSSKGGLFGDAIKW

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein6.9e-4076.24Show/hide
Query:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASSPQ
        +GTYID+KCPFTGTVSIRG IL+GT + AKM RTIIVR +YLH+V KY+RYEKRHSNIPAH++PCFRVK GD V IGQCRPLS TVRFNVLKVI A S  
Subjt:  QGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASSPQ

Query:  V
        +
Subjt:  V

AT5G23740.1 ribosomal protein S11-beta3.7e-4182.47Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        G YID KCPFTGTVSIRG ILAGT + AKM RTIIVR NYLH+V KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A +
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTCCCCTAGTGCACTCATACCCCAAGGGACATATATAGATAAGAAGTGTCCATTCACTGGCACTGTTTCTATTAGGGGGCATATATTGGCTGGTACCTACGATGC
CAAGATGGTGAGAACCATCATTGTTAGAGGTAATTATCTCCACTATGTGGGGAAGTACCAAAGGTACGAAAAGAGACACTCTAACATTCCAGCACACATGACGCCTTGCT
TCAGGGTGAAAGTAGGAGACCATGTTATCATTGGCCAATGCAGGCCATTGTCGAACACAGTGAGGTTTAATGTATTGAAAGTGATTCTTGCTAGTTCACCACAAGTGATT
GACGTGAATGGAGACTATGCCACTCCTCTGTACAAGTTCTTGAAGTCAAGCAAAGGTGGGCTCTTTGGAGACGCCATTAAGTGGATGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGTCCCCTAGTGCACTCATACCCCAAGGGACATATATAGATAAGAAGTGTCCATTCACTGGCACTGTTTCTATTAGGGGGCATATATTGGCTGGTACCTACGATGC
CAAGATGGTGAGAACCATCATTGTTAGAGGTAATTATCTCCACTATGTGGGGAAGTACCAAAGGTACGAAAAGAGACACTCTAACATTCCAGCACACATGACGCCTTGCT
TCAGGGTGAAAGTAGGAGACCATGTTATCATTGGCCAATGCAGGCCATTGTCGAACACAGTGAGGTTTAATGTATTGAAAGTGATTCTTGCTAGTTCACCACAAGTGATT
GACGTGAATGGAGACTATGCCACTCCTCTGTACAAGTTCTTGAAGTCAAGCAAAGGTGGGCTCTTTGGAGACGCCATTAAGTGGATGCTTTAA
Protein sequenceShow/hide protein sequence
MWSPSALIPQGTYIDKKCPFTGTVSIRGHILAGTYDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASSPQVI
DVNGDYATPLYKFLKSSKGGLFGDAIKWML