CuGenDBv2

Gene ID	Lcy06g013440
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	SWR1-complex protein 4
Genome location	Chr06:20010347..20014891
RNA-Seq Expression	Lcy06g013440
Synteny	Lcy06g013440
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0006338 - chromatin remodeling (biological process) GO:0043967 - histone H4 acetylation (biological process) GO:0043968 - histone H2A acetylation (biological process) GO:0035267 - NuA4 histone acetyltransferase complex (cellular component)
InterPro domains	IPR027109 - SWR1-complex protein 4/DNA methyltransferase 1-associated protein 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6593255.1 SWR1-complex protein 4, partial [Cucurbita argyrosperma subsp. sororia]

6.6e-28

32.59

Show/hide

Query:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------
        V ALTGGLAPIM AIDTS+LKKRPPSDEKI WQWLPF NSA K                  GDYSFAK  YNKSVEIVKYTDE+YEKYLN+         
Subjt:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------------------------------------------LMGI
                                                                                                        L  +
Subjt:  ------------------------------------------------------------------------------------------------LMGI

Query:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK
        SVNLKPRVPTK+  VCAEHLELRKEILTLLNLQKQLQNKEAEGSSFR+ PYNE PGTPK
Subjt:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK

XP_011659406.1 SWR1-complex protein 4 [Cucumis sativus]

5.0e-28

32.87

Show/hide

Query:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------
        V ALTGGLAPIM AID S+LKKRPPSDEKI WQWLPF+NSA K                  GDYSFAK  YNKSVE+VKYTDEEYEKYL D         
Subjt:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------------------------------------------LMGI
                                                                                                        L  +
Subjt:  ------------------------------------------------------------------------------------------------LMGI

Query:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK
        SVNLKPRVPTKA  VCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPY E PGTPK
Subjt:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK

XP_022153204.1 SWR1-complex protein 4 [Momordica charantia]

1.3e-28

32.87

Show/hide

Query:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------
        V ALTGGL PIM AIDTS+LKKRPPSDEKI WQWLPFTNSA K                  GDYSFAK  YNKSV++VKYTDEEYEK+LND         
Subjt:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------------------------------------------LMGI
                                                                                                        L  +
Subjt:  ------------------------------------------------------------------------------------------------LMGI

Query:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK
        SVNLKPRVPTKA  VCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYN+ PGTPK
Subjt:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK

XP_038898526.1 SWR1-complex protein 4 isoform X1 [Benincasa hispida]

1.3e-28

33.15

Show/hide

Query:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------
        V ALTGGLAPIM AIDTS+LKKRPPSDEKI WQWLPFTNSA K                  GDYSFAK  YNKSVE+VKYTDEEYEKYL D         
Subjt:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------------------------------------------LMGI
                                                                                                        L  +
Subjt:  ------------------------------------------------------------------------------------------------LMGI

Query:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK
        SVNLKPRVPTKA  VCAEHLELRKEILTLLNLQKQLQNKEAEGSSFR+SPY E PGTPK
Subjt:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK

XP_038898527.1 SWR1-complex protein 4 isoform X2 [Benincasa hispida]

3.2e-30

34.49

Show/hide

Query:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------
        V ALTGGLAPIM AIDTS+LKKRPPSDEKI WQWLPFTNSA K                  GDYSFAK  YNKSVE+VKYTDEEYEKYL D         
Subjt:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------LMGISVNLKPRVPTKAVL
                                                                                          L  +SVNLKPRVPTKA  
Subjt:  ----------------------------------------------------------------------------------LMGISVNLKPRVPTKAVL

Query:  VCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK
        VCAEHLELRKEILTLLNLQKQLQNKEAEGSSFR+SPY E PGTPK
Subjt:  VCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K9K0 SANT domain-containing protein

2.4e-28

32.87

Show/hide

Query:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------
        V ALTGGLAPIM AID S+LKKRPPSDEKI WQWLPF+NSA K                  GDYSFAK  YNKSVE+VKYTDEEYEKYL D         
Subjt:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------------------------------------------LMGI
                                                                                                        L  +
Subjt:  ------------------------------------------------------------------------------------------------LMGI

Query:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK
        SVNLKPRVPTKA  VCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPY E PGTPK
Subjt:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK

A0A6J1DID3 SWR1-complex protein 4

6.4e-29

32.87

Show/hide

Query:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------
        V ALTGGL PIM AIDTS+LKKRPPSDEKI WQWLPFTNSA K                  GDYSFAK  YNKSV++VKYTDEEYEK+LND         
Subjt:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------------------------------------------LMGI
                                                                                                        L  +
Subjt:  ------------------------------------------------------------------------------------------------LMGI

Query:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK
        SVNLKPRVPTKA  VCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYN+ PGTPK
Subjt:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK

A0A6J1H708 SWR1-complex protein 4-like

3.2e-28

32.59

Show/hide

Query:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------
        V ALTGGLAPIM AIDTS+LKKRPPSDEKI WQWLPF NSA K                  GDYSFAK  YNKSVEIVKYTDE+YEKYLN+         
Subjt:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------------------------------------------LMGI
                                                                                                        L  +
Subjt:  ------------------------------------------------------------------------------------------------LMGI

Query:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK
        SVNLKPRVPTK+  VCAEHLELRKEILTLLNLQKQLQNKEAEGSSFR+ PYNE PGTPK
Subjt:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK

A0A6J1JTQ5 SWR1-complex protein 4-like isoform X1

4.2e-28

32.59

Show/hide

Query:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------
        V ALTGGLAPIM AIDTS+LKKRPPSDEKI WQWLPF+NSA K                  GDYSFAK  YNKSVE+VKYTDEEYEK+L D         
Subjt:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------------------------------------------LMGI
                                                                                                        L  +
Subjt:  ------------------------------------------------------------------------------------------------LMGI

Query:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK
        SVNLKPRVPTKA  VCAEHLELRKEILTLLNLQKQLQNKEAEGSSFR+SPY+E PGTPK
Subjt:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK

A0A6J1JX24 SWR1-complex protein 4-like isoform X3

4.2e-28

32.59

Show/hide

Query:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------
        V ALTGGLAPIM AIDTS+LKKRPPSDEKI WQWLPF+NSA K                  GDYSFAK  YNKSVE+VKYTDEEYEK+L D         
Subjt:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND---------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------------------------------------------LMGI
                                                                                                        L  +
Subjt:  ------------------------------------------------------------------------------------------------LMGI

Query:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK
        SVNLKPRVPTKA  VCAEHLELRKEILTLLNLQKQLQNKEAEGSSFR+SPY+E PGTPK
Subjt:  SVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK

SwissProt top hits

e value

%identity

Alignment

Q8VZL6 SWR1-complex protein 4

2.9e-18

56.04

Show/hide

Query:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND
        V ALTGG+AP+M +ID   LK+RPP+DEK+ W+WL FTNSA K                  GDYSFAK  YNKSV+I+KYTDEEYE +L D
Subjt:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND

Q8VZL6 SWR1-complex protein 4

8.7e-15

64.86

Show/hide

Query:  TDEEYEKYLNDLMGISVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK
        T +  E+ L DL    VNLKP+VPTK   VC EHLELRKEILTLLNLQKQLQ KE+EGSS R+  Y   P TPK
Subjt:  TDEEYEKYLNDLMGISVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK

Arabidopsis top hits

e value

%identity

Alignment

AT2G47210.1 myb-like transcription factor family protein

2.0e-19

56.04

Show/hide

Query:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND
        V ALTGG+AP+M +ID   LK+RPP+DEK+ W+WL FTNSA K                  GDYSFAK  YNKSV+I+KYTDEEYE +L D
Subjt:  VSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGK------------------GDYSFAKYMYNKSVEIVKYTDEEYEKYLND

AT2G47210.1 myb-like transcription factor family protein

6.2e-16

64.86

Show/hide

Query:  TDEEYEKYLNDLMGISVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK
        T +  E+ L DL    VNLKP+VPTK   VC EHLELRKEILTLLNLQKQLQ KE+EGSS R+  Y   P TPK
Subjt:  TDEEYEKYLNDLMGISVNLKPRVPTKAVLVCAEHLELRKEILTLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTTTCTGCGCTTACTGGTGGTCTGGCGCCTATTATGTCGGCAATCGATACATCTCAGCTGAAGAAGCGACCTCCATCAGATGAGAAGATTATGTGGCAATGG
CTTCCTTTCACAAATTCTGCTGGAAAAGGTGACTACTCCTTTGCAAAGTATATGTATAACAAGTCTGTTGAAATTGTCAAATACACGGATGAGGAGTATGAGAAG
TATTTGAATGACCTTATGGGTATATCCGTTAATCTAAAGCCGAGGGTTCCAACAAAAGCAGTCTTAGTCTGTGCAGAGCATCTTGAATTAAGAAAAGAAATATTG
ACTCTTCTGAATCTTCAGAAGCAGTTGCAAAATAAGGAGGCAGAAGGCTCATCTTTCCGTGACAGTCCATACAACGAGCCACCTGGCACACCCAAGGTCAGTAAA
TGTACTCGCTTACACGAGTACCGTAATTCTCTCATGTCTGTGAATCTTCAATTCTTCCTCTGCTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVSALTGGLAPIMSAIDTSQLKKRPPSDEKIMWQWLPFTNSAGKGDYSFAKYMYNKSVEIVKYTDEEYEKYLNDLMGISVNLKPRVPTKAVLVCAEHLELRKEIL
TLLNLQKQLQNKEAEGSSFRDSPYNEPPGTPKVSKCTRLHEYRNSLMSVNLQFFLC

Lcy06g013440 (gene) of Sponge gourd (P93075) v1 genome