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Lcy06g013770 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g013770
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr06:21659803..21664727
RNA-Seq ExpressionLcy06g013770
SyntenyLcy06g013770
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CCA66054.1 hypothetical protein [Beta vulgaris subsp. vulgaris]1.4e-1744.72Show/hide
Query:  MKQVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSAR
        ++ +F SYFS +F+SSNPS   ++  +  I   VT E N KLL PF++ EI  A++QMHP K PGPDG   +FYQ FW  VGD  +     IL+   S  
Subjt:  MKQVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSAR

Query:  VWNNIHTTLIPQV-----ATEFR
          NN +  LIP+V     A EFR
Subjt:  VWNNIHTTLIPQV-----ATEFR

XP_010684019.1 PREDICTED: uncharacterized protein LOC104898622 [Beta vulgaris subsp. vulgaris]2.4e-1744.17Show/hide
Query:  MKQVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSAR
        ++ +F SYF  +F+SSNPS    D  LQ I   V+   N +LL PFT+ EI  AI+QMHP K PG DG   +FYQ FW  +GD  +L    IL+ I S  
Subjt:  MKQVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSAR

Query:  VWNNIHTTLIPQVATEFREA
          NN +  LIP+V    + A
Subjt:  VWNNIHTTLIPQVATEFREA

XP_030940247.1 uncharacterized protein LOC115965211 [Quercus lobata]8.4e-1845.05Show/hide
Query:  QVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSARVW
        Q+FI Y+S+LF++SNPS   +   L+NI   V+  MNA L+ PF + E++ A+KQM P K PGPDG P +FYQ +W  +GD  S   L  LN        
Subjt:  QVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSARVW

Query:  NNIHTTLIPQV
        N+ H TLIP++
Subjt:  NNIHTTLIPQV

XP_030945870.1 uncharacterized protein LOC115970371 [Quercus lobata]1.9e-1744.25Show/hide
Query:  MKQVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSAR
        +K++ +S++ +L +SS+PS   +D  L+ I  KVT  MN +LL  FTR EI+ A+K M P K PGPDG P +F+Q+FWS +GD  S   L+ LN      
Subjt:  MKQVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSAR

Query:  VWNNIHTTLIPQV
          N+   TLIP+V
Subjt:  VWNNIHTTLIPQV

XP_035544636.1 uncharacterized protein LOC118348020 [Juglans regia]3.8e-1845.45Show/hide
Query:  QVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSARVW
        + F SYF +LFS+SNP+   ++  LQNI  +VT EMN KL  PF++ EIE  IK M P K PGPDGF   FYQ  W+ VGD      L++LN   S    
Subjt:  QVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSARVW

Query:  NNIHTTLI-----PQVATEFR
        N+ +  LI     P++ TE+R
Subjt:  NNIHTTLI-----PQVATEFR

TrEMBL top hitse value%identityAlignment
A0A2N9FBQ4 Reverse transcriptase domain-containing protein5.3e-1841.46Show/hide
Query:  MKQVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSAR
        + Q+F++Y+S LF++SNP+L  +D  ++NI   VT  MN+ L++ FT  E+ +A+KQM P K PGPDG P +FYQ +W  +G+      L  LN  +  +
Subjt:  MKQVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSAR

Query:  VWNNIHTTLI-----PQVATEFR
          N+ + TLI     P+V TEFR
Subjt:  VWNNIHTTLI-----PQVATEFR

A0A2N9HE46 Uncharacterized protein2.4e-1842.28Show/hide
Query:  MKQVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSAR
        + Q+F++Y+S LF++SNP+L  +D  ++NI   VT  MN+ L++ FT  E+ +A+KQM P K PGPDG P +FYQ +W  +G+      L  LN  +  R
Subjt:  MKQVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSAR

Query:  VWNNIHTTLI-----PQVATEFR
          N+ + TLI     P+V TEFR
Subjt:  VWNNIHTTLI-----PQVATEFR

A0A2N9HMC6 Reverse transcriptase domain-containing protein1.2e-1732.12Show/hide
Query:  QVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSARVW
        +V + YF  +F+SS+P+ + I   +  ++ K T EMN  L   +T +E+  A+KQM P+K PGPDG P LF+Q+FWS++G   S   LE+LN   S +  
Subjt:  QVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSARVW

Query:  NNIHTTLIP-QVATEFREAYRSRSCHSSPCLEHPLTPKKREEDMTPTVMDKE-------NTVLQNNTVQLYTECAVRSQADGSGYGAMVIDMD
        N+ H  LIP +++ +    YR  + ++        T   R + + P ++ +          ++ N  V   T  +++S A G G G M + MD
Subjt:  NNIHTTLIP-QVATEFREAYRSRSCHSSPCLEHPLTPKKREEDMTPTVMDKE-------NTVLQNNTVQLYTECAVRSQADGSGYGAMVIDMD

A0A6P9EBC5 uncharacterized protein LOC1183480201.8e-1845.45Show/hide
Query:  QVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSARVW
        + F SYF +LFS+SNP+   ++  LQNI  +VT EMN KL  PF++ EIE  IK M P K PGPDGF   FYQ  W+ VGD      L++LN   S    
Subjt:  QVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSARVW

Query:  NNIHTTLI-----PQVATEFR
        N+ +  LI     P++ TE+R
Subjt:  NNIHTTLI-----PQVATEFR

F4NCJ6 Reverse transcriptase domain-containing protein6.9e-1844.72Show/hide
Query:  MKQVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSAR
        ++ +F SYFS +F+SSNPS   ++  +  I   VT E N KLL PF++ EI  A++QMHP K PGPDG   +FYQ FW  VGD  +     IL+   S  
Subjt:  MKQVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSAR

Query:  VWNNIHTTLIPQV-----ATEFR
          NN +  LIP+V     A EFR
Subjt:  VWNNIHTTLIPQV-----ATEFR

SwissProt top hitse value%identityAlignment
P08548 LINE-1 reverse transcriptase homolog1.4e-0429.06Show/hide
Query:  MKQVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLT-PFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSA
        ++++   Y+ +L+S    +L  ID  L+        +   ++L  P + SEI   I+ +   K PGPDGF + FYQTF  E+  I     L +   I+  
Subjt:  MKQVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLT-PFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSA

Query:  RVWNN----IHTTLIPQ
         +  N     + TLIP+
Subjt:  RVWNN----IHTTLIPQ

P11369 LINE-1 retrotransposable element ORF2 protein4.2e-0436.11Show/hide
Query:  SYFSQLFSSSNPSLDCIDTTLQNI-TAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTF
        S++ +L+S+   +LD +D  L      K+  +    L +P +  EIE  I  +   K PGPDGF   FYQTF
Subjt:  SYFSQLFSSSNPSLDCIDTTLQNI-TAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAGGTCTTCATATCCTATTTCTCACAGTTGTTTTCTTCATCTAATCCATCTCTGGATTGTATTGATACGACATTGCAGAATATAACGGCAAAGGTAACT
CCAGAAATGAATGCAAAACTGCTTACTCCATTCACAAGGAGTGAGATAGAGAGAGCTATTAAGCAAATGCACCCATCTAAAGTGCCTGGTCCTGATGGTTTCCCT
ACTCTATTCTACCAGACTTTCTGGAGCGAGGTTGGTGATATTACTTCTTTAAATTGCTTGGAAATTTTAAACCGCATACAATCTGCTCGTGTTTGGAACAATATT
CACACTACTTTGATCCCTCAGGTAGCGACTGAGTTTCGAGAAGCCTACAGAAGCCGATCTTGCCACTCGAGTCCGTGTTTAGAACACCCTTTGACACCTAAGAAG
AGGGAAGAGGACATGACGCCTACAGTTATGGACAAAGAGAATACGGTCTTACAAAATAACACTGTCCAGTTGTATACGGAATGTGCTGTACGGTCGCAGGCAGAT
GGGTCTGGGTATGGGGCGATGGTTATCGACATGGATGGGCAAGTTTGTGGTAAAATGGAATTTTATGATTCAACCTCACATTCGTCACTTGCAAGGGAGGTAAAT
GCTTTAATTAATGGTCTTCGACTCTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAGGTCTTCATATCCTATTTCTCACAGTTGTTTTCTTCATCTAATCCATCTCTGGATTGTATTGATACGACATTGCAGAATATAACGGCAAAGGTAACT
CCAGAAATGAATGCAAAACTGCTTACTCCATTCACAAGGAGTGAGATAGAGAGAGCTATTAAGCAAATGCACCCATCTAAAGTGCCTGGTCCTGATGGTTTCCCT
ACTCTATTCTACCAGACTTTCTGGAGCGAGGTTGGTGATATTACTTCTTTAAATTGCTTGGAAATTTTAAACCGCATACAATCTGCTCGTGTTTGGAACAATATT
CACACTACTTTGATCCCTCAGGTAGCGACTGAGTTTCGAGAAGCCTACAGAAGCCGATCTTGCCACTCGAGTCCGTGTTTAGAACACCCTTTGACACCTAAGAAG
AGGGAAGAGGACATGACGCCTACAGTTATGGACAAAGAGAATACGGTCTTACAAAATAACACTGTCCAGTTGTATACGGAATGTGCTGTACGGTCGCAGGCAGAT
GGGTCTGGGTATGGGGCGATGGTTATCGACATGGATGGGCAAGTTTGTGGTAAAATGGAATTTTATGATTCAACCTCACATTCGTCACTTGCAAGGGAGGTAAAT
GCTTTAATTAATGGTCTTCGACTCTTGTAG
Protein sequenceShow/hide protein sequence
MKQVFISYFSQLFSSSNPSLDCIDTTLQNITAKVTPEMNAKLLTPFTRSEIERAIKQMHPSKVPGPDGFPTLFYQTFWSEVGDITSLNCLEILNRIQSARVWNNI
HTTLIPQVATEFREAYRSRSCHSSPCLEHPLTPKKREEDMTPTVMDKENTVLQNNTVQLYTECAVRSQADGSGYGAMVIDMDGQVCGKMEFYDSTSHSSLAREVN
ALINGLRLL