CuGenDBv2

Gene ID	Lcy06g013810
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	40S ribosomal protein S13
Genome location	Chr06:21961909..21964469
RNA-Seq Expression	Lcy06g013810
Synteny	Lcy06g013810
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0016740 - transferase activity (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR023029 - Ribosomal protein S15P

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039994.1 40S ribosomal protein S13 [Cucumis melo var. makuwa]

1.7e-29

87.34

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Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +VKSVTG KIL ILKAHGL PE  EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

KAF7810164.1 40S ribosomal protein S13 [Senna tora]

1.7e-29

87.34

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Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +VKSVTG KIL ILKAHGL PE  EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

PPD86677.1 hypothetical protein GOBAR_DD16380 [Gossypium barbadense]

2.0e-30

87.34

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Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +VKSVTG KIL ILKAHGL PE  EDLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIHCL RYYKKTKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

XP_004153746.1 40S ribosomal protein S13 [Cucumis sativus]

1.7e-29

87.34

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Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +VKSVTG KIL ILKAHGL PE  EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

XP_008448906.1 PREDICTED: 40S ribosomal protein S13 [Cucumis melo]

1.7e-29

87.34

Show/hide

Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +VKSVTG KIL ILKAHGL PE  EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

TrEMBL top hits

e value

%identity

Alignment

A0A151TJI5 40S ribosomal protein S13

8.4e-30

87.34

Show/hide

Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +VKSVTG KIL ILKAHGLTPE  EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYK+TKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

A0A5A7T967 40S ribosomal protein S13

8.4e-30

87.34

Show/hide

Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +VKSVTG KIL ILKAHGL PE  EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

A0A6A5MIL6 40S ribosomal protein S13

8.4e-30

87.34

Show/hide

Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +VKSVTG KIL ILKAHGL PE  EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

A0A6J5U4E2 Ribosomal_S13_N domain-containing protein

8.4e-30

87.34

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Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +VKSVTG KIL ILKAHGL PE  EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L+RYYKKTKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

M5XE15 Ribosomal_S13_N domain-containing protein

8.4e-30

87.34

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Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +VKSVTG KIL ILKAHGL PE  EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L+RYYKKTKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

3.3e-31

86.08

Show/hide

Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +VKSVTG KIL ILKAHGL PE  EDLYHLIKK VSI+KHLER RKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

P59223 40S ribosomal protein S13-1

6.6e-32

86.08

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Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +VKSVTG KIL ILKAHGL PE  EDLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

P59224 40S ribosomal protein S13-2

6.6e-32

86.08

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Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +VKSVTG KIL ILKAHGL PE  EDLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

P62302 40S ribosomal protein S13

1.1e-31

86.08

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Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +V SVTG KIL ILKAHGL PE  EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

Q69UI2 40S ribosomal protein S13-1

1.1e-29

83.33

Show/hide

Query:  VKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KIL ILKAHGL PE  EDLY LIKK V+I+KHLERNRKDKDSKFRLILVESRIH L RYYK+TKKLPP WK
Subjt:  VKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

4.7e-33

86.08

Show/hide

Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +VKSVTG KIL ILKAHGL PE  EDLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

AT4G00100.1 ribosomal protein S13A

4.7e-33

86.08

Show/hide

Query:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        +VKSVTG KIL ILKAHGL PE  EDLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  EVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

Sequences

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CDS sequence

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ATGGAGGTGAAAAGTGTAACTGGGCGCAAGATCTTGCACATATTGAAGGCTCATGGGCTAACTCCTGAAACCCTGGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTC
AATCAAAAAGCATTTGGAGAGAAACAGGAAAGACAAGGATTCCAAGTTTAGGTTGATTTTGGTGGAGAGCAGGATCCATTGCCTGACCCGATATTACAAGAAGACAAAGA
AGCTTCCCCCTGTTTGGAAGTA

mRNA sequence

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Protein sequence

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MEVKSVTGRKILHILKAHGLTPETLEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

Lcy06g013810 (gene) of Sponge gourd (P93075) v1 genome