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Lcy06g014360 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g014360
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:27689975..27690914
RNA-Seq ExpressionLcy06g014360
SyntenyLcy06g014360
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_013694754.1 uncharacterized protein LOC106398790 [Brassica napus]8.0e-1030.15Show/hide
Query:  WIPSDYCEGIWKADRGKELEEDRMARSLV--VCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPER
        W  S Y +  W  +  +E  ++++   L   + W++W +RNE+L   ++   Q   +K  +    +  +E    EV+       + AI +   W PPP+ 
Subjt:  WIPSDYCEGIWKADRGKELEEDRMARSLV--VCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPER

Query:  MLKLNCDATWSETHQRGGIGWILRSPNDTPLCAGYK
         LK N DATW +  + GG+GW+LR  N   L AG K
Subjt:  MLKLNCDATWSETHQRGGIGWILRSPNDTPLCAGYK

XP_018435800.1 PREDICTED: uncharacterized protein LOC108808101 [Raphanus sativus]5.2e-0927.61Show/hide
Query:  WIPSDYCEGIWKADRGKELEEDRMARSL--VVCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPER
        W  S +    W  +  +E +++ +      V+ W++W +RNE L   +  D     +K+     E+  +E    +V+ +     +TA+     W PPP  
Subjt:  WIPSDYCEGIWKADRGKELEEDRMARSL--VVCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPER

Query:  MLKLNCDATWSETHQRGGIGWILRSPNDTPLCAG
         +K N D +WS+  + GG+GW+LR P  T + AG
Subjt:  MLKLNCDATWSETHQRGGIGWILRSPNDTPLCAG

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]8.8e-0931.93Show/hide
Query:  DYCEGIWKADRGKELEEDRMARSLVVCWQIWNHRNEVLHNK-QQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPERMLKLN
        DY + IW     ++ ++ +    LV+ W IW +RN+++H+  +QP  QK+     +   EF       L ++ D +L R+        W PP + + KLN
Subjt:  DYCEGIWKADRGKELEEDRMARSLVVCWQIWNHRNEVLHNK-QQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPERMLKLN

Query:  CDATWSETHQRGGIGWILR
         DATW ++   GG+GWI+R
Subjt:  CDATWSETHQRGGIGWILR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]6.1e-1033.94Show/hide
Query:  LVVCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPERMLKLNCDATWSETHQRGGIGWILRSPNDT
        L+  W IWNHRN V+   +      + Q++T + +E      +  + +T  S+   T  +++  W PPP  +  LN DA+WS++  RGGIGWI+RS +  
Subjt:  LVVCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPERMLKLNCDATWSETHQRGGIGWILRSPNDT

Query:  PLCAGYKCV
         + AG + V
Subjt:  PLCAGYKCV

XP_031094430.1 uncharacterized protein LOC115998901 [Ipomoea triloba]8.8e-0926.85Show/hide
Query:  CPFTNEIFFGDRSGWIPSDYCEGIWKADRGKELEEDRMARSLVVCWQIWNHRNEVL-HNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTA
        C F  + +    + W  S      W A+    L ++ + + ++VCW +W +RN +   N   P I  ++  +  Y +    K++T      +S+L  +TA
Subjt:  CPFTNEIFFGDRSGWIPSDYCEGIWKADRGKELEEDRMARSLVVCWQIWNHRNEVL-HNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTA

Query:  IDQIDAWIPPPERMLKLNCDATWSETHQRGGIGWILRSPNDTPLCAGYK
        +    +W+PPP   LKLN D + +  H+R G GW+ R  ++T +  G +
Subjt:  IDQIDAWIPPPERMLKLNCDATWSETHQRGGIGWILRSPNDTPLCAGYK

TrEMBL top hitse value%identityAlignment
A0A6J0JJI5 uncharacterized protein LOC1088081012.5e-0927.61Show/hide
Query:  WIPSDYCEGIWKADRGKELEEDRMARSL--VVCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPER
        W  S +    W  +  +E +++ +      V+ W++W +RNE L   +  D     +K+     E+  +E    +V+ +     +TA+     W PPP  
Subjt:  WIPSDYCEGIWKADRGKELEEDRMARSL--VVCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPER

Query:  MLKLNCDATWSETHQRGGIGWILRSPNDTPLCAG
         +K N D +WS+  + GG+GW+LR P  T + AG
Subjt:  MLKLNCDATWSETHQRGGIGWILRSPNDTPLCAG

A0A6J0JKZ5 uncharacterized protein LOC1088079601.1e-0726.47Show/hide
Query:  WIPSDYCEGIWKADRGKELEEDRMARSLV--VCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPER
        W  S Y    W  +  KE   +++   L   + W++W +RNE++   ++                    E T  + + D+ L R+    ++  W+PPP  
Subjt:  WIPSDYCEGIWKADRGKELEEDRMARSLV--VCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPER

Query:  MLKLNCDATWSETHQRGGIGWILRSPNDTPLCAGYK
         LK N D TW +  + GG+GW++R      L AG K
Subjt:  MLKLNCDATWSETHQRGGIGWILRSPNDTPLCAGYK

A0A6J1CQG0 uncharacterized protein LOC1110132163.6e-0834.86Show/hide
Query:  LEEDRMARSLVVCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRK----EITYLEVQTDSSLRRSTA-IDQIDA-WIPPPERMLKLNCDATWSETH
        L ++ +A S+V+ WQIW  RN  +   +  D Q+L++ I  + +  + K      T    Q D  L R    ++ +   W  PP    KLN DA+WSE  
Subjt:  LEEDRMARSLVVCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRK----EITYLEVQTDSSLRRSTA-IDQIDA-WIPPPERMLKLNCDATWSETH

Query:  QRGGIGWIL
        + GGIGWIL
Subjt:  QRGGIGWIL

A0A6J1D4B6 uncharacterized protein LOC1110171814.3e-0931.93Show/hide
Query:  DYCEGIWKADRGKELEEDRMARSLVVCWQIWNHRNEVLHNK-QQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPERMLKLN
        DY + IW     ++ ++ +    LV+ W IW +RN+++H+  +QP  QK+     +   EF       L ++ D +L R+        W PP + + KLN
Subjt:  DYCEGIWKADRGKELEEDRMARSLVVCWQIWNHRNEVLHNK-QQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPERMLKLN

Query:  CDATWSETHQRGGIGWILR
         DATW ++   GG+GWI+R
Subjt:  CDATWSETHQRGGIGWILR

A0A6J1DNV9 uncharacterized protein LOC1110224033.0e-1033.94Show/hide
Query:  LVVCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPERMLKLNCDATWSETHQRGGIGWILRSPNDT
        L+  W IWNHRN V+   +      + Q++T + +E      +  + +T  S+   T  +++  W PPP  +  LN DA+WS++  RGGIGWI+RS +  
Subjt:  LVVCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPERMLKLNCDATWSETHQRGGIGWILRSPNDT

Query:  PLCAGYKCV
         + AG + V
Subjt:  PLCAGYKCV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein7.7e-1129.37Show/hide
Query:  WIPSDYCEGIWKADRGKELEEDRMARSLV--VCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEF-LRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPE
        W  S Y    W  + G    +   A  LV  + W++W +RNE++   ++ + Q++ ++  +   E+ +R E       T   + RS+       W PPP 
Subjt:  WIPSDYCEGIWKADRGKELEEDRMARSLV--VCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEF-LRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPE

Query:  RMLKLNCDATWSETHQRGGIGWILRS
        + +K N DATW+  ++R GIGW+LR+
Subjt:  RMLKLNCDATWSETHQRGGIGWILRS

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.7e-0727.43Show/hide
Query:  DRMARSLV--VCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPERMLKLNCDATWSETHQRGGIGW
        DR+ R +   + W+IW   N+++ N  +   Q   +   N   E+L   +T        +  R+    +   W PP    LK N DA+  E +   G+GW
Subjt:  DRMARSLV--VCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAIDQIDAWIPPPERMLKLNCDATWSETHQRGGIGW

Query:  ILRSPNDTPLCAG
        ILR+   T +  G
Subjt:  ILRSPNDTPLCAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAGAGGTCTTTGGTCGAAATTCTGCCCTTTTACTAATGAAATCTTTTTTGGTGACAGATCTGGATGGATTCCTTCGGATTACTGTGAAGGAATTTGGAAGGCAGA
CCGAGGAAAAGAACTAGAGGAAGACAGAATGGCTAGATCTCTTGTGGTGTGTTGGCAAATTTGGAATCACAGAAATGAAGTTCTCCACAACAAACAACAACCAGACATTC
AGAAATTGGAGCAGAAGATCACCAATTATTGTTCAGAATTCCTAAGGAAAGAAATTACTTACCTGGAGGTGCAGACGGACTCGAGCTTGAGGCGGTCTACTGCAATAGAT
CAAATCGATGCCTGGATTCCTCCGCCTGAAAGGATGTTGAAGCTGAACTGTGACGCCACCTGGTCTGAAACACATCAGCGAGGTGGTATTGGGTGGATTCTTCGATCTCC
GAATGACACCCCTCTTTGCGCGGGTTACAAATGTGTGTGA
mRNA sequenceShow/hide mRNA sequence
TACTATTAGAGTTGACCCTTCTGTGCAAGGTTTCCCTGTTGGTCAATTCATAACCCTTCAGGGAGAATGGAATGAAGATTTAGTTCGAAGATCTTTCCTGGAAAGTGATG
CTCGGGCCATTCTTAGCATTCCAATCAACCCACTGCAAAAGGAAGACACATTCTTTGGGACCTTGATCCAAAGGGTTTCTTTCTCTGTCAAAAGTGCTTATAGACTAGGA
GTGCAGTTATAAAATTTGGAGGCGGCATCCACTTCAAACTCCACTTGTCAAGAAGCCTTATGGAAGAAATTTTGGAATATCAGTCTTCCTCCTAAAATCAAGATCTGTGG
AAAAAAGTTGAGACGACAAATCATCTGTTCTGGGAATGTAAAATGGTAAGAGGTCTTTGGTCGAAATTCTGCCCTTTTACTAATGAAATCTTTTTTGGTGACAGATCTGG
ATGGATTCCTTCGGATTACTGTGAAGGAATTTGGAAGGCAGACCGAGGAAAAGAACTAGAGGAAGACAGAATGGCTAGATCTCTTGTGGTGTGTTGGCAAATTTGGAATC
ACAGAAATGAAGTTCTCCACAACAAACAACAACCAGACATTCAGAAATTGGAGCAGAAGATCACCAATTATTGTTCAGAATTCCTAAGGAAAGAAATTACTTACCTGGAG
GTGCAGACGGACTCGAGCTTGAGGCGGTCTACTGCAATAGATCAAATCGATGCCTGGATTCCTCCGCCTGAAAGGATGTTGAAGCTGAACTGTGACGCCACCTGGTCTGA
AACACATCAGCGAGGTGGTATTGGGTGGATTCTTCGATCTCCGAATGACACCCCTCTTTGCGCGGGTTACAAATGTGTGTGA
Protein sequenceShow/hide protein sequence
MVRGLWSKFCPFTNEIFFGDRSGWIPSDYCEGIWKADRGKELEEDRMARSLVVCWQIWNHRNEVLHNKQQPDIQKLEQKITNYCSEFLRKEITYLEVQTDSSLRRSTAID
QIDAWIPPPERMLKLNCDATWSETHQRGGIGWILRSPNDTPLCAGYKCV