CuGenDBv2

Gene ID	Lcy06g015260
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Protein SDA1
Genome location	Chr06:33193051..33194828
RNA-Seq Expression	Lcy06g015260
Synteny	Lcy06g015260
Gene Ontology terms	GO:0000055 - ribosomal large subunit export from nucleus (biological process) GO:0015031 - protein transport (biological process) GO:0015074 - DNA integration (biological process) GO:0030036 - actin cytoskeleton organization (biological process) GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR007949 - SDA1 domain IPR027312 - Sda1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6575976.1 Protein SDA1-like protein, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-65

72.31

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Query:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELS
        +DA T+ R+  LKKRK S+FD+Q +T +SSLRAL+KL+  V GK+   TDGILSNEDF+RIKEL+AKK AK ALTQHGLLRN      +AFK+ +T+ELS
Subjt:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELS

Query:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        TKR++P+K EVHIRR++SK+EKLALV+AGREDRGKYQA+AAVKQKKTGG SN+QKEHKKAMPLAAKR++VAK+RVDKRKK+QRSGKQFRG+KAWK
Subjt:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

KAG7014500.1 Protein SDA1-like protein [Cucurbita argyrosperma subsp. argyrosperma]

2.1e-65

72.31

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Query:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELS
        +DA T+ R+  LKKRK S+FD+Q +T +SSLRAL+KL+  V GK+   TDGILSNEDF+RIKEL+AKK AK ALTQHGLLRN      +AFK+ +T+ELS
Subjt:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELS

Query:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        TKR++P+K EVHIRR++SK+EKLALV+AGREDRGKYQA+AAVKQKKTGG SN+QKEHKKAMPLAAKR++VAK+RVDKRKK+QRSGKQFRG+KAWK
Subjt:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

XP_022149440.1 protein SDA1 homolog [Momordica charantia]

3.9e-72

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Query:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELS
        MDAGTS R+ ML KRKRS+FD+QLVT DSSLRAL+KL+G V  K   STDGILSNEDF+RIKEL+AKK AK+ALTQHGLLRNGS     AFKI +T+EL 
Subjt:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELS

Query:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        TKRV+P+K EVHIRR+LSK+EKLALV+AGREDRGKYQA+AAVKQKKTGG SNQQKEHKKAMPLAAKRAK+AKTRVDKRKK+QRSGKQFRG+KAWK
Subjt:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

XP_022953635.1 protein SDA1 homolog [Cucurbita moschata]

2.1e-65

72.31

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Query:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELS
        +DA T+ R+  LKKRK S+FD+Q +T +SSLRAL+KL+  V GK+   TDGILSNEDF+RIKEL+AKK AK ALTQHGLLRN      +AFK+ +T+ELS
Subjt:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELS

Query:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        TKR++P+K EVHIRR++SK+EKLALV+AGREDRGKYQA+AAVKQKKTGG SN+QKEHKKAMPLAAKR++VAK+RVDKRKK+QRSGKQFRG+KAWK
Subjt:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

XP_023548412.1 protein SDA1 homolog [Cucurbita pepo subsp. pepo]

2.1e-65

72.31

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Query:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELS
        +DA T+ R+  LKKRK S+FD+Q +T +SSLRAL+KL+  V GK+   TDGILSNEDF+RIKEL+AKK AK ALTQHGLLRN      +AFK+ +T+ELS
Subjt:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELS

Query:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        TKR++P+K EVHIRR++SK+EKLALV+AGREDRGKYQA+AAVKQKKTGG SN+QKEHKKAMPLAAKR++VAK+RVDKRKK+QRSGKQFRG+KAWK
Subjt:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CDG0 Protein SDA1

5.5e-64

71.79

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Query:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELS
        ++A TS ++   KKRK S+FD+QLVT DSSLRAL++L+   V K+   TDGILSNEDFQRIK+L+AKK AK ALTQHGLLRN S     A K+ NT+ELS
Subjt:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELS

Query:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
         KRV+PAK EVHIRR+++K+EKLALV+AGRE+RGKYQA+AAVKQKKTGG SN+QKEHKKAMPLAAKR+KVAK+R+DK+KKNQRSGKQFRG+KAWK
Subjt:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

A0A5D3D6E9 Protein SDA1

5.5e-64

71.79

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Query:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELS
        ++A TS ++   KKRK S+FD+QLVT DSSLRAL++L+   V K+   TDGILSNEDFQRIK+L+AKK AK ALTQHGLLRN S     A K+ NT+ELS
Subjt:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELS

Query:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
         KRV+PAK EVHIRR+++K+EKLALV+AGRE+RGKYQA+AAVKQKKTGG SN+QKEHKKAMPLAAKR+KVAK+R+DK+KKNQRSGKQFRG+KAWK
Subjt:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

A0A6J1D5Q3 Protein SDA1

1.9e-72

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Query:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELS
        MDAGTS R+ ML KRKRS+FD+QLVT DSSLRAL+KL+G V  K   STDGILSNEDF+RIKEL+AKK AK+ALTQHGLLRNGS     AFKI +T+EL 
Subjt:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELS

Query:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        TKRV+P+K EVHIRR+LSK+EKLALV+AGREDRGKYQA+AAVKQKKTGG SNQQKEHKKAMPLAAKRAK+AKTRVDKRKK+QRSGKQFRG+KAWK
Subjt:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

A0A6J1GQ82 Protein SDA1

1.0e-65

72.31

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Query:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELS
        +DA T+ R+  LKKRK S+FD+Q +T +SSLRAL+KL+  V GK+   TDGILSNEDF+RIKEL+AKK AK ALTQHGLLRN      +AFK+ +T+ELS
Subjt:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELS

Query:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        TKR++P+K EVHIRR++SK+EKLALV+AGREDRGKYQA+AAVKQKKTGG SN+QKEHKKAMPLAAKR++VAK+RVDKRKK+QRSGKQFRG+KAWK
Subjt:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

A0A6J1JM56 Protein SDA1

8.6e-65

71.79

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Query:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELS
        +DA T+ R+  LKKRK S+FD+Q +T +SSLRAL+KL+  V  K+   TDGILSNEDF+RIKEL+AKK AK ALTQHGLLRN      +AFK+ +T+ELS
Subjt:  MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELS

Query:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        TKR++P+K EVHIRR++SK+EKLALV+AGREDRGKYQA+AAVKQKKTGG SN+QKEHKKAMPLAAKR++VAK+RVDKRKK+QRSGKQFRG+KAWK
Subjt:  TKRVNPAKFEVHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G13160.1 ARM repeat superfamily protein

1.1e-45

58.66

Show/hide

Query:  KKRKRSNFDRQLVTCDSSLRALRKLS-GKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGSAFKISNTEELSTKRVNPAKFEVHIRRK
        KKRK  +FD  L++ D+SLRAL++ +  K    +    DGILSNEDF++IK LQAKK AK AL + G       FK+ N+++LS KRV+PAK E HIR K
Subjt:  KKRKRSNFDRQLVTCDSSLRALRKLS-GKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGSAFKISNTEELSTKRVNPAKFEVHIRRK

Query:  LSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        L+K+++L LV+AGREDRGKY+++AAVKQKKTGGSSN+QKEH+K MPLAA R+K  K++  K+ KN  SG QFRGRKAWK
Subjt:  LSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

AT4G31520.1 SDA1 family protein

8.2e-44

56.98

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Query:  KKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKT-LGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGSAFKISNTEELSTKRVNPAKFEVHIRRK
        KKRK  +FD  L+  D+SLRAL++ +     +T     DGILSNEDF++IKE++ KK AK AL + GL       K+ ++++LS K VNPAK E HIR+K
Subjt:  KKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKT-LGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGSAFKISNTEELSTKRVNPAKFEVHIRRK

Query:  LSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        L K+E+L LV+AGREDRGKY+++ A+KQKKTGGSSN+QKEHKK MPLAA R+K  K +  K+ KN  SG QFRGRKAWK
Subjt:  LSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

ATGGATGCTGGAACTAGTCCTAGAAATTTTATGCTGAAGAAAAGGAAACGTTCCAATTTTGACCGACAACTTGTTACTTGCGATTCAAGCCTTCGAGCATTGAGGAAATT
AAGTGGCAAAGTCGTAGGAAAAACGTTAGGATCAACTGACGGCATTCTTTCCAATGAAGACTTCCAAAGGATCAAGGAATTACAGGCAAAGAAAGCAGCCAAAGATGCTT
TGACTCAACATGGGTTGCTGAGAAATGGTTCTGCATTTAAGATTTCAAATACTGAAGAATTGAGTACAAAGCGAGTGAATCCTGCCAAGTTCGAGGTTCATATCCGGAGA
AAGCTAAGCAAGGATGAAAAACTAGCATTAGTGAGGGCCGGAAGAGAGGATAGAGGAAAGTACCAAGCACAGGCTGCTGTCAAACAAAAGAAGACGGGAGGTTCAAGCAA
TCAGCAGAAAGAACACAAGAAAGCCATGCCTCTAGCTGCGAAGCGAGCTAAAGTAGCAAAAACTCGAGTCGACAAGAGGAAGAAGAATCAACGTTCAGGAAAACAGTTTA
GAGGGAGGAAGGCCTGGAAATAATTATGAAGACGCAAAAGCCTAAATTGTGTGCTCATTCTCTTTTTAGAATGGGGAATGACAAATTTTGCTAAAGATGAGTGCTAAATT
CTATTATCTATTAGTTTGCTGTCAACTCCATCCTCGTAATTTATATGCAATAGAGCATTCCTTAAATTCATTTTTCATAAATAGCCAATGTTATCTAAATAACAGGGATG
CAAGTGTAAGCACGTTGATTTAGTTCAGATTTATTTTTCTTTTCAAAACTGAACCCTAAGGGCCCGTTTGGTAACGTTCTCGTTTCTTGTTTCCGTTTCTTCATTTTTAA
TAAAGAAAAATAGAATTTCATGAC

Protein sequence

Show/hide protein sequence

MDAGTSPRNFMLKKRKRSNFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGSAFKISNTEELSTKRVNPAKFEVHIRR
KLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

Lcy06g015260 (gene) of Sponge gourd (P93075) v1 genome