; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy06g015830 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g015830
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr06:35180112..35182115
RNA-Seq ExpressionLcy06g015830
SyntenyLcy06g015830
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK09969.1 calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa]4.2e-2938.51Show/hide
Query:  MSDRETSDLLTLLSLIGEITFSASRRDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPF
        +SDRETS+++ L+SL+   +F   RRD+ +WSP    GF C+SFF  L++ +P+  S+ SL+W++KVP+K   F WQV                      
Subjt:  MSDRETSDLLTLLSLIGEITFSASRRDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPF

Query:  CCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPQFRDQGKFLWQVGICAIIWG
                EEDLDH+LW C+  + VWD+F   FGL +ARHR +R  +EEFL +    ++G FLW   + A + G
Subjt:  CCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPQFRDQGKFLWQVGICAIIWG

TYK11201.1 SIL1 [Cucumis melo var. makuwa]4.5e-2347.71Show/hide
Query:  KVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPFCCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPQFRDQGKFL
        ++KVPKK +FFI QV+ G +NT+D L + +  L+GPF C LC+ A+EDLD++ W C    AVW+ F   F   F   R +R  IEEFL HP FR++   L
Subjt:  KVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPFCCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPQFRDQGKFL

Query:  WQVGICAII
        W  G+CA+I
Subjt:  WQVGICAII

TYK29954.1 reverse transcriptase [Cucumis melo var. makuwa]9.7e-2648.41Show/hide
Query:  RDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPFCCILCRMAEEDLDHILWRCDFATAV
        R++ +WS + S+GFS +S F  LLDPSP+   +F  +W++KV KKV+FF WQV+  R N +D L R+        CCILCR A+EDLDH+LW C +A AV
Subjt:  RDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPFCCILCRMAEEDLDHILWRCDFATAV

Query:  WDEFFGLFGLQFARHRGLREMIEEFL
        W  F   F ++ A  R +R+ IEEFL
Subjt:  WDEFFGLFGLQFARHRGLREMIEEFL

XP_022968893.1 epimerase family protein SDR39U1 homolog, chloroplastic-like [Cucurbita maxima]2.9e-2240.94Show/hide
Query:  MSDRETSDLLTLLSLIGEITFSASRRDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPF
        +SDRE  D+ +LLS +G +   +  R+I  WSP+ S+G  C SFF  L  P  S  S      KV + KK++FF WQ +HGRVNT+ C+ +    L+GP 
Subjt:  MSDRETSDLLTLLSLIGEITFSASRRDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPF

Query:  CCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEE
         C     A E+LDHI+ +  FA   WD F   FG+  AR+R    M+ E
Subjt:  CCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEE

XP_023554066.1 epimerase family protein SDR39U1 homolog, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo]5.0e-2241.61Show/hide
Query:  MSDRETSDLLTLLSLIGEITFSASRRDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPF
        +SDRE+ D+ +LLS +G +   +S R+I  WSP+ S+G    SFF  L  P  S  S      KV + KKV+FF WQ +HGRVNT+ C+ +    L+GP 
Subjt:  MSDRETSDLLTLLSLIGEITFSASRRDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPF

Query:  CCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEE
         C     A E+LDHI+ +  FA   WD F   FG++ AR+R    M+ E
Subjt:  CCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEE

TrEMBL top hitse value%identityAlignment
A0A5D3CI74 Calpain-type cysteine protease DEK12.0e-2938.51Show/hide
Query:  MSDRETSDLLTLLSLIGEITFSASRRDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPF
        +SDRETS+++ L+SL+   +F   RRD+ +WSP    GF C+SFF  L++ +P+  S+ SL+W++KVP+K   F WQV                      
Subjt:  MSDRETSDLLTLLSLIGEITFSASRRDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPF

Query:  CCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPQFRDQGKFLWQVGICAIIWG
                EEDLDH+LW C+  + VWD+F   FGL +ARHR +R  +EEFL +    ++G FLW   + A + G
Subjt:  CCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPQFRDQGKFLWQVGICAIIWG

A0A5D3E255 Reverse transcriptase4.7e-2648.41Show/hide
Query:  RDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPFCCILCRMAEEDLDHILWRCDFATAV
        R++ +WS + S+GFS +S F  LLDPSP+   +F  +W++KV KKV+FF WQV+  R N +D L R+        CCILCR A+EDLDH+LW C +A AV
Subjt:  RDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPFCCILCRMAEEDLDHILWRCDFATAV

Query:  WDEFFGLFGLQFARHRGLREMIEEFL
        W  F   F ++ A  R +R+ IEEFL
Subjt:  WDEFFGLFGLQFARHRGLREMIEEFL

M5VH03 zf-RVT domain-containing protein (Fragment)1.7e-2331.02Show/hide
Query:  MSDRETSDLLTLLSLIGEITFSASRRDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCL-IGP
        +S+ E ++++ LL ++G +    SR D   W  +    FSC+SF   LL  +      FS +WK K P K+QFF+W   +GR+NT DC+ R+ P + + P
Subjt:  MSDRETSDLLTLLSLIGEITFSASRRDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCL-IGP

Query:  FCCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPQFRDQGKFLWQVGICAIIWGL-CERNNRTFRG
          C+LC+   E++DH+   C ++  +W    G  G+++   +G  E++   L       +   L    + AI W +  ERN + F+G
Subjt:  FCCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPQFRDQGKFLWQVGICAIIWGL-CERNNRTFRG

M5WJ76 Reverse transcriptase domain-containing protein (Fragment)5.7e-2431.55Show/hide
Query:  MSDRETSDLLTLLSLIGEITFSASRRDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCL-IGP
        +S+ E ++++ LL ++G +    SR D   W  +    FSC+SF   LL  +      FS +WK K P K+QFF+W   +GR+NT DC+ R+ P + + P
Subjt:  MSDRETSDLLTLLSLIGEITFSASRRDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCL-IGP

Query:  FCCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPQFRDQGKFLWQVGICAIIWGL-CERNNRTFRG
          C+LC+   E++DH+   C ++  +W +  G  G+++   +G  E++   L       +   L    + AI W +  ERN R F+G
Subjt:  FCCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPQFRDQGKFLWQVGICAIIWGL-CERNNRTFRG

M5XV38 zf-RVT domain-containing protein5.7e-2431.55Show/hide
Query:  MSDRETSDLLTLLSLIGEITFSASRRDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCL-IGP
        +S+ E ++++ LL ++G +    SR D   W  +    FSC+SF   LL  +      FS +WK K P K+QFF+W   +GR+NT DC+ R+ P + + P
Subjt:  MSDRETSDLLTLLSLIGEITFSASRRDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCL-IGP

Query:  FCCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPQFRDQGKFLWQVGICAIIWGL-CERNNRTFRG
          C+LC+   E++DH+   C ++  +W +  G  G+++   +G  E++   L       +   L    + AI W +  ERN R F+G
Subjt:  FCCILCRMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPQFRDQGKFLWQVGICAIIWGL-CERNNRTFRG

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657506.8e-0631.73Show/hide
Query:  RDICLWSPDSSRGFSCRSFFHRLL---DPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPFCCILCRMAEEDLDHILWRCDFA
        RD   W       FS RS +  L     P P+  S F+ LWKV+VP++V+ F+W V +  V T +   R+   L     C +C+   E + H+L  C   
Subjt:  RDICLWSPDSSRGFSCRSFFHRLL---DPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPFCCILCRMAEEDLDHILWRCDFA

Query:  TAVW
          +W
Subjt:  TAVW

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein2.4e-0627.42Show/hide
Query:  LIGEITFSASR-RDICLWSPDSSRGFSCRSFFHRLLD-----PSPSDVS------IFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPFCC
        LIGE+     R  D   W   SS  ++ +S +  L        SP +VS      I+  +WK +   K+Q F+W+ +   +     L+ +   L     C
Subjt:  LIGEITFSASR-RDICLWSPDSSRGFSCRSFFHRLLD-----PSPSDVS------IFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPFCC

Query:  ILCRMAEEDLDHILWRCDFATAVW
        I C   +E ++H+L++C FA   W
Subjt:  ILCRMAEEDLDHILWRCDFATAVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGATCGAGAAACCTCTGACCTGTTGACTCTCCTGTCTTTGATTGGGGAGATCACTTTTAGTGCTTCTAGGAGGGATATTTGCTTGTGGAGTCCCGACTCC
TCTCGCGGTTTCTCTTGTCGGTCCTTTTTCCATCGCTTATTAGACCCCTCTCCTTCCGATGTTTCCATCTTTTCGTTACTTTGGAAGGTGAAAGTCCCAAAAAAG
GTGCAGTTTTTTATTTGGCAGGTTATCCATGGAAGAGTCAACACCCTTGATTGTCTTTCGAGAAAGATTCCTTGTCTCATTGGGCCCTTTTGTTGTATTCTTTGT
CGGATGGCGGAGGAAGACCTTGACCATATTTTGTGGAGATGTGATTTTGCCACGGCTGTTTGGGACGAGTTCTTTGGCCTGTTCGGCTTGCAGTTTGCTAGACAT
AGAGGTCTCAGAGAGATGATCGAGGAGTTCCTTCCCCATCCCCAGTTTCGGGATCAAGGAAAGTTCTTGTGGCAAGTTGGGATTTGTGCTATTATTTGGGGTCTT
TGTGAGAGAAACAACAGGACCTTTAGAGGGTTGGAGAGGGACATTGTTGAGCTAATCATCAACTTTGTTGATAATTCCTTTCTTGCTTTAATTGCCCTGCTTATA
TTTTCATTTCTTAATGCTCCTTTGTCTACCAATGCTCGCTGGTTAGGCCAAGAATTGATTTCAAGGATCATTTTCTTTGCATTTTCCTGCAACATTAAGTTCCAT
CCCTTAATATCATTTTATGTCAGCACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGATCGAGAAACCTCTGACCTGTTGACTCTCCTGTCTTTGATTGGGGAGATCACTTTTAGTGCTTCTAGGAGGGATATTTGCTTGTGGAGTCCCGACTCC
TCTCGCGGTTTCTCTTGTCGGTCCTTTTTCCATCGCTTATTAGACCCCTCTCCTTCCGATGTTTCCATCTTTTCGTTACTTTGGAAGGTGAAAGTCCCAAAAAAG
GTGCAGTTTTTTATTTGGCAGGTTATCCATGGAAGAGTCAACACCCTTGATTGTCTTTCGAGAAAGATTCCTTGTCTCATTGGGCCCTTTTGTTGTATTCTTTGT
CGGATGGCGGAGGAAGACCTTGACCATATTTTGTGGAGATGTGATTTTGCCACGGCTGTTTGGGACGAGTTCTTTGGCCTGTTCGGCTTGCAGTTTGCTAGACAT
AGAGGTCTCAGAGAGATGATCGAGGAGTTCCTTCCCCATCCCCAGTTTCGGGATCAAGGAAAGTTCTTGTGGCAAGTTGGGATTTGTGCTATTATTTGGGGTCTT
TGTGAGAGAAACAACAGGACCTTTAGAGGGTTGGAGAGGGACATTGTTGAGCTAATCATCAACTTTGTTGATAATTCCTTTCTTGCTTTAATTGCCCTGCTTATA
TTTTCATTTCTTAATGCTCCTTTGTCTACCAATGCTCGCTGGTTAGGCCAAGAATTGATTTCAAGGATCATTTTCTTTGCATTTTCCTGCAACATTAAGTTCCAT
CCCTTAATATCATTTTATGTCAGCACCTAA
Protein sequenceShow/hide protein sequence
MSDRETSDLLTLLSLIGEITFSASRRDICLWSPDSSRGFSCRSFFHRLLDPSPSDVSIFSLLWKVKVPKKVQFFIWQVIHGRVNTLDCLSRKIPCLIGPFCCILC
RMAEEDLDHILWRCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPQFRDQGKFLWQVGICAIIWGLCERNNRTFRGLERDIVELIINFVDNSFLALIALLI
FSFLNAPLSTNARWLGQELISRIIFFAFSCNIKFHPLISFYVST