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Lcy06g016100 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g016100
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:36239842..36240459
RNA-Seq ExpressionLcy06g016100
SyntenyLcy06g016100
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0577075.1 hypothetical protein [Gossypium lobatum]6.4e-0824.69Show/hide
Query:  LICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHSQSLEDVRRLIEECEE--IIMNTDATFQGTQGSNSLGAEAELEGLRLARSL
        + C   WAIW DRN+ +H++   S +    ++  Y++E        D  S+  E    ++    E  ++++    ++      +  A A  + +++ + +
Subjt:  LICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHSQSLEDVRRLIEECEE--IIMNTDATFQGTQGSNSLGAEAELEGLRLARSL

Query:  EVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA
        + R + I  DSLS+I+  R  +  +S +   + DI  +Q SF +  F HV    N LAH +A
Subjt:  EVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA

MBA0701905.1 hypothetical protein [Gossypium aridum]1.6e-0623.28Show/hide
Query:  LICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHSQSLEDVRRLIEECEEII-MNTDATFQGTQGSNSLG---------------
        + C   WAIW DRN+ +H++   S +    ++  Y++E    + +  +  +S +   +  +  ++I+ +N DA +      ++ G               
Subjt:  LICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHSQSLEDVRRLIEECEEII-MNTDATFQGTQGSNSLG---------------

Query:  -----------AE--AELEGLRLARSLEVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA
                   AE  A  + ++  + ++ R + I  DSLS+I+  R  +  +S + T + DI  +Q SF +  F HV    N LAH +A
Subjt:  -----------AE--AELEGLRLARSLEVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA

XP_012477492.1 PREDICTED: uncharacterized protein LOC105793109 [Gossypium raimondii]1.2e-0624.84Show/hide
Query:  LICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHS-QSLEDVRRLIEECEEIIMNTDATFQGTQGSNSLGAEAELEGLRLARSLE
        + C   WAIW DRN+ +H++   S +    ++  Y+ E        D  S QS   +     E  +++++    +Q      +  A A  + +++ + ++
Subjt:  LICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHS-QSLEDVRRLIEECEEIIMNTDATFQGTQGSNSLGAEAELEGLRLARSLE

Query:  VRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA
         R + I  DSLS+I+  R  +  +S +   + DI  +Q  F +  F HV    N L H +A
Subjt:  VRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.6e-0927.46Show/hide
Query:  LDLICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHSQSLEDVRRLIE-----ECEEIIMNTDATFQGTQGS-------------
        L+L  I  W IWNDRN  +H + +   + +CEW+  +L+ + +A  +S+   ++  + R +++         + +NTDA  +G   S             
Subjt:  LDLICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHSQSLEDVRRLIE-----ECEEIIMNTDATFQGTQGS-------------

Query:  -----------NSLGAEAE--LEGLRLARSLEVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA
                   + L AE    LEGL+ A +     L + SDSL  IQ IR+E+         + +I+ +   F  + F H   Q NR AH LA
Subjt:  -----------NSLGAEAE--LEGLRLARSLEVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]4.6e-0628.19Show/hide
Query:  SVLDLICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYR-------------------------KANAVSDAHSQSLEDVRRLIEECEEIIMNTD
        S L L  I  WA+WNDR+  ++ + IP   I+ EWIL Y EE R                         K N    A S+    V  L+ E    I+   
Subjt:  SVLDLICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYR-------------------------KANAVSDAHSQSLEDVRRLIEECEEIIMNTD

Query:  ATFQGTQGSNSLGAEAELEGLRLARSLEVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKL
          F   +        A  EGL LA  L V  + + +DSL  +  I D+   +    + + DI+   R F ++ F HV  + N +A+ L
Subjt:  ATFQGTQGSNSLGAEAELEGLRLARSLEVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKL

TrEMBL top hitse value%identityAlignment
A0A6J1DX30 uncharacterized protein LOC1110248741.3e-0927.46Show/hide
Query:  LDLICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHSQSLEDVRRLIE-----ECEEIIMNTDATFQGTQGS-------------
        L+L  I  W IWNDRN  +H + +   + +CEW+  +L+ + +A  +S+   ++  + R +++         + +NTDA  +G   S             
Subjt:  LDLICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHSQSLEDVRRLIE-----ECEEIIMNTDATFQGTQGS-------------

Query:  -----------NSLGAEAE--LEGLRLARSLEVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA
                   + L AE    LEGL+ A +     L + SDSL  IQ IR+E+         + +I+ +   F  + F H   Q NR AH LA
Subjt:  -----------NSLGAEAE--LEGLRLARSLEVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA

A0A6J1DZK3 uncharacterized protein LOC1110249682.2e-0628.19Show/hide
Query:  SVLDLICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYR-------------------------KANAVSDAHSQSLEDVRRLIEECEEIIMNTD
        S L L  I  WA+WNDR+  ++ + IP   I+ EWIL Y EE R                         K N    A S+    V  L+ E    I+   
Subjt:  SVLDLICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYR-------------------------KANAVSDAHSQSLEDVRRLIEECEEIIMNTD

Query:  ATFQGTQGSNSLGAEAELEGLRLARSLEVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKL
          F   +        A  EGL LA  L V  + + +DSL  +  I D+   +    + + DI+   R F ++ F HV  + N +A+ L
Subjt:  ATFQGTQGSNSLGAEAELEGLRLARSLEVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKL

A0A7J8NJC0 RNase H domain-containing protein3.1e-0824.69Show/hide
Query:  LICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHSQSLEDVRRLIEECEE--IIMNTDATFQGTQGSNSLGAEAELEGLRLARSL
        + C   WAIW DRN+ +H++   S +    ++  Y++E        D  S+  E    ++    E  ++++    ++      +  A A  + +++ + +
Subjt:  LICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHSQSLEDVRRLIEECEE--IIMNTDATFQGTQGSNSLGAEAELEGLRLARSL

Query:  EVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA
        + R + I  DSLS+I+  R  +  +S +   + DI  +Q SF +  F HV    N LAH +A
Subjt:  EVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA

A0A7J8YQW2 Uncharacterized protein7.7e-0723.28Show/hide
Query:  LICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHSQSLEDVRRLIEECEEII-MNTDATFQGTQGSNSLG---------------
        + C   WAIW DRN+ +H++   S +    ++  Y++E    + +  +  +S +   +  +  ++I+ +N DA +      ++ G               
Subjt:  LICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHSQSLEDVRRLIEECEEII-MNTDATFQGTQGSNSLG---------------

Query:  -----------AE--AELEGLRLARSLEVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA
                   AE  A  + ++  + ++ R + I  DSLS+I+  R  +  +S + T + DI  +Q SF +  F HV    N LAH +A
Subjt:  -----------AE--AELEGLRLARSLEVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA

A0A7J9IIF5 Uncharacterized protein5.0e-0625Show/hide
Query:  LICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHSQSLEDVRRLIEECEEIIMNTDATFQGTQGSNSLG----------------
        + C   W IWN RN  +H R   S +I  + I  Y+ E        + H+   + +++  EE  E  +  DA F+  +  ++ G                
Subjt:  LICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHSQSLEDVRRLIEECEEIIMNTDATFQGTQGSNSLG----------------

Query:  ------------AEAELEGLRLARSLEVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA
                    A A L+ ++L  SL +R++TI  DS ++I+  +   + +S I   + DIKN    F +V F  +    N  AH++A
Subjt:  ------------AEAELEGLRLARSLEVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATTAAGGACCGTTGGTTCAGACTTGGTGACAGTCTGGGGAGTGTGTTAGATCTTATCTGCATTGGTGCGTGGGCGATATGGAATGATAGGAACCATTTTTTACA
CCATCGTCCAATTCCTAGTCCACAGATTAGGTGCGAGTGGATCCTTGATTATCTGGAGGAATATCGAAAGGCCAATGCAGTGAGTGATGCTCATTCCCAATCTCTAGAGG
ATGTTCGTCGATTGATTGAGGAATGTGAGGAGATTATAATGAACACTGATGCAACATTTCAGGGAACCCAAGGTTCAAATTCTTTGGGTGCAGAAGCGGAGTTAGAGGGG
CTTCGCCTAGCGAGATCATTAGAGGTGAGAGCGTTAACAATTGTGTCTGATTCTCTTTCATTAATTCAATCGATCAGAGATGAAGTTCAATGTGAATCTTGTATTGCCAC
TACTTTGGGAGATATTAAGAATATTCAAAGATCCTTCGTGAAGGTGGAGTTTGGTCATGTCTGTTGTCAGTTTAATAGACTTGCTCATAAGTTGGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATATTAAGGACCGTTGGTTCAGACTTGGTGACAGTCTGGGGAGTGTGTTAGATCTTATCTGCATTGGTGCGTGGGCGATATGGAATGATAGGAACCATTTTTTACA
CCATCGTCCAATTCCTAGTCCACAGATTAGGTGCGAGTGGATCCTTGATTATCTGGAGGAATATCGAAAGGCCAATGCAGTGAGTGATGCTCATTCCCAATCTCTAGAGG
ATGTTCGTCGATTGATTGAGGAATGTGAGGAGATTATAATGAACACTGATGCAACATTTCAGGGAACCCAAGGTTCAAATTCTTTGGGTGCAGAAGCGGAGTTAGAGGGG
CTTCGCCTAGCGAGATCATTAGAGGTGAGAGCGTTAACAATTGTGTCTGATTCTCTTTCATTAATTCAATCGATCAGAGATGAAGTTCAATGTGAATCTTGTATTGCCAC
TACTTTGGGAGATATTAAGAATATTCAAAGATCCTTCGTGAAGGTGGAGTTTGGTCATGTCTGTTGTCAGTTTAATAGACTTGCTCATAAGTTGGCCTAG
Protein sequenceShow/hide protein sequence
MDIKDRWFRLGDSLGSVLDLICIGAWAIWNDRNHFLHHRPIPSPQIRCEWILDYLEEYRKANAVSDAHSQSLEDVRRLIEECEEIIMNTDATFQGTQGSNSLGAEAELEG
LRLARSLEVRALTIVSDSLSLIQSIRDEVQCESCIATTLGDIKNIQRSFVKVEFGHVCCQFNRLAHKLA