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Lcy06g016230 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g016230
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr06:36858239..36858961
RNA-Seq ExpressionLcy06g016230
SyntenyLcy06g016230
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH92195.1 RNA-directed DNA polymerase (Reverse transcriptase) [Trifolium medium]2.0e-2144.92Show/hide
Query:  DDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKGK
        DD  +FF+A  +E  C++K L  YE AS Q +NY KS    SRNT D +   I   LGV +    G YLG+P+  G+NK  MF  L++R WK +Q+W GK
Subjt:  DDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKGK

Query:  IISAGGKEILIKAIAQAV
         +S  G+E+L+K++AQA+
Subjt:  IISAGGKEILIKAIAQAV

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]1.2e-2150Show/hide
Query:  DDSLIFFKASKEEGVCIRKDLQTYEWASV-QKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKG
        DD L+FFKAS      I+  L++YE AS  Q +N DKS+ ++S+NT +++VG I +EL V  + S+G YLGLP+QTG+NK  +F  +K+R WK LQ WKG
Subjt:  DDSLIFFKASKEEGVCIRKDLQTYEWASV-QKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKG

Query:  KIISAGGKEILI
        K+ S GG+E+L+
Subjt:  KIISAGGKEILI

XP_024024678.1 uncharacterized protein LOC112092512 [Morus notabilis]1.8e-2250.43Show/hide
Query:  DDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKGK
        DDS++F +A ++    I+  L+TYE AS Q  N+ KS    S N S+   G+I+  LG+  S+S  +YLGLPA  G+NK  +F  LKER WK LQ WKGK
Subjt:  DDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKGK

Query:  IISAGGKEILIKAIAQA
        + S GG+EILIKA+AQA
Subjt:  IISAGGKEILIKAIAQA

XP_030923330.1 uncharacterized protein LOC115950239 [Quercus lobata]4.1e-2249.59Show/hide
Query:  MVFDDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNW
        M  DDSL+F +A++ EG  I + LQ YE AS Q +N +KS    S NTS+   G I+  LGVK+ +    YLGLP   G+ K   F++LK+R WK LQ W
Subjt:  MVFDDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNW

Query:  KGKIISAGGKEILIKAIAQAV
        KG ++S  GKEILIKA+AQA+
Subjt:  KGKIISAGGKEILIKAIAQAV

XP_030933459.1 uncharacterized protein LOC115959256 [Quercus lobata]1.6e-2148.76Show/hide
Query:  MVFDDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNW
        M  DDSL+F +A+++EG  I + LQ YE AS Q +N +KS    S NTSD   G I+  LGVK+ +    YLGLP   G+ K   F+ LK+R WK LQ W
Subjt:  MVFDDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNW

Query:  KGKIISAGGKEILIKAIAQAV
        KG ++S  GKEILIK +AQ++
Subjt:  KGKIISAGGKEILIKAIAQAV

TrEMBL top hitse value%identityAlignment
A0A2K3JY40 Ribonuclease H (Fragment)4.9e-2144.07Show/hide
Query:  DDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKGK
        DD  +FF+A   E  C+++ L  YE AS Q +NY KS    SRNTS+ +   I   LGV +    G YLG+P+  G+NK+ +F  LK+R WK +Q W GK
Subjt:  DDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKGK

Query:  IISAGGKEILIKAIAQAV
         +S  G+E+L+K++AQA+
Subjt:  IISAGGKEILIKAIAQAV

A0A392MZ02 RNA-directed DNA polymerase (Reverse transcriptase)9.8e-2244.92Show/hide
Query:  DDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKGK
        DD  +FF+A  +E  C++K L  YE AS Q +NY KS    SRNT D +   I   LGV +    G YLG+P+  G+NK  MF  L++R WK +Q+W GK
Subjt:  DDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKGK

Query:  IISAGGKEILIKAIAQAV
         +S  G+E+L+K++AQA+
Subjt:  IISAGGKEILIKAIAQAV

A0A392NHS7 RNA-directed DNA polymerase (Reverse transcriptase) (Fragment)1.1e-2044.92Show/hide
Query:  DDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKGK
        DD   FF+A   E  C++K L  YE AS Q +NY KS    SRNT+  V   I   LGV +    G YLG+P+  G+NK+ MF   ++R WK +Q+W GK
Subjt:  DDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKGK

Query:  IISAGGKEILIKAIAQAV
         +S  G+E+L+KA+AQA+
Subjt:  IISAGGKEILIKAIAQAV

A0A6J1DUG8 uncharacterized protein LOC1110241355.8e-2250Show/hide
Query:  DDSLIFFKASKEEGVCIRKDLQTYEWASV-QKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKG
        DD L+FFKAS      I+  L++YE AS  Q +N DKS+ ++S+NT +++VG I +EL V  + S+G YLGLP+QTG+NK  +F  +K+R WK LQ WKG
Subjt:  DDSLIFFKASKEEGVCIRKDLQTYEWASV-QKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKG

Query:  KIISAGGKEILI
        K+ S GG+E+L+
Subjt:  KIISAGGKEILI

A0A7N2L6Z9 Reverse transcriptase domain-containing protein1.9e-2049.15Show/hide
Query:  DDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKGK
        DDSL+F KA++EE   +++ L+ YE AS QKVN DKS    S NT+  +   I   LG  Q +    YLGLP+  G++K+ +FA++KER    L  WKGK
Subjt:  DDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKGK

Query:  IISAGGKEILIKAIAQAV
        ++S+GGKEILIKA+AQA+
Subjt:  IISAGGKEILIKAIAQAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGATGACAGCCTGATTTTCTTCAAAGCTTCTAAAGAGGAGGGTGTGTGCATTAGAAAGGATCTTCAAACCTATGAGTGGGCATCTGTGCAGAAGGTCAACTA
TGATAAATCCTTGTGTATGTTGAGCAGGAATACTTCCGACAGAGTCGTGGGGGACATAATTAGAGAGCTCGGTGTTAAGCAATCGAACTCCATAGGTCTCTACTTAGGCC
TCCCGGCCCAGACGGGTAAGAACAAAGAAACCATGTTTGCTAAGCTTAAGGAGCGAGCTTGGAAGATATTGCAAAACTGGAAGGGCAAAATTATATCTGCAGGGGGCAAG
GAGATTCTTATTAAAGCTATTGCCCAGGCGGTATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGATGACAGCCTGATTTTCTTCAAAGCTTCTAAAGAGGAGGGTGTGTGCATTAGAAAGGATCTTCAAACCTATGAGTGGGCATCTGTGCAGAAGGTCAACTA
TGATAAATCCTTGTGTATGTTGAGCAGGAATACTTCCGACAGAGTCGTGGGGGACATAATTAGAGAGCTCGGTGTTAAGCAATCGAACTCCATAGGTCTCTACTTAGGCC
TCCCGGCCCAGACGGGTAAGAACAAAGAAACCATGTTTGCTAAGCTTAAGGAGCGAGCTTGGAAGATATTGCAAAACTGGAAGGGCAAAATTATATCTGCAGGGGGCAAG
GAGATTCTTATTAAAGCTATTGCCCAGGCGGTATTTTGA
Protein sequenceShow/hide protein sequence
MVFDDSLIFFKASKEEGVCIRKDLQTYEWASVQKVNYDKSLCMLSRNTSDRVVGDIIRELGVKQSNSIGLYLGLPAQTGKNKETMFAKLKERAWKILQNWKGKIISAGGK
EILIKAIAQAVF