; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy06g016480 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g016480
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:37815796..37817061
RNA-Seq ExpressionLcy06g016480
SyntenyLcy06g016480
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG48608.1 hypothetical protein EZV62_024483 [Acer yangbiense]5.7e-1626.67Show/hide
Query:  RVQSIPQLPLDSSLSVLVSSSGQWDRTMVRDNFNQEECDLICSLPVGCD-QSDVQIWHFEKSGVYSVRSGYCFALCSRFQGRPSSSNADN---LRVSLGG
        +V S   LP   S+S L+ S G+W   +V   FN+EE  LI  +P+    + D  +WH++K G +SV+S Y  AL  R     SSS+       R+ L  
Subjt:  RVQSIPQLPLDSSLSVLVSSSGQWDRTMVRDNFNQEECDLICSLPVGCD-QSDVQIWHFEKSGVYSVRSGYCFALCSRFQGRPSSSNADN---LRVSLGG

Query:  GFSKNLRCSCGQFGISVISTAGYVLW----------------------WSRIL--------ALRPTTGVAGGGCILRNSKGQVMFTV---VFLLPVCGNV
            NL   CG  G+ V  +  + LW                      W R +             T + G   +LR   G+++  V   + L+P    V
Subjt:  GFSKNLRCSCGQFGISVISTAGYVLW----------------------WSRIL--------ALRPTTGVAGGGCILRNSKGQVMFTV---VFLLPVCGNV

Query:  DLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMFHDSEVCLPLFTPREGNQVAHGLAHMAVG
        ++AEA ++  G+ +A D G   + +ESD++ ++ +  G      +V  ++  ++ +    E    ++ PR  N+VAH +A  A+G
Subjt:  DLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMFHDSEVCLPLFTPREGNQVAHGLAHMAVG

TXG72479.1 hypothetical protein EZV62_001058 [Acer yangbiense]4.4e-1636.36Show/hide
Query:  ALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMFHDSEVCL
        A R   G +G GC++R+S G V  ++     VC    +AE LA+L G  LA +LG     +ESD+L +++ +R     +SEVG ++  +  +F    V  
Subjt:  ALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMFHDSEVCL

Query:  PLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWPLELDHLVAAD
          F PR  N+V HGLA +AVG     VW+ + PL ++ LV  D
Subjt:  PLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWPLELDHLVAAD

TXG73320.1 hypothetical protein EZV62_001899 [Acer yangbiense]1.0e-1727Show/hide
Query:  SGQWDRTMVRDNFNQEECDLICSLPVG-CDQSDVQIWHFEKSGVYSVRSGYCFALCSRFQGRPSSSNADNLRVSLGG---------GFSKNLRCSCGQFG
        SG W+  +++D F +E+   I ++P     + D   WHF K+G YSV SGY  ++        S  N  N +V + G           + +   SC    
Subjt:  SGQWDRTMVRDNFNQEECDLICSLPVG-CDQSDVQIWHFEKSGVYSVRSGYCFALCSRFQGRPSSSNADNLRVSLGG---------GFSKNLRCSCGQFG

Query:  ISVISTAGYVLWWSR-------------ILALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQ
         SV    G +  WS              + AL   + + G G I+R+  G VM +    L +    D+AEA+ +L G+ LA +     L VESD+  ++ 
Subjt:  ISVISTAGYVLWWSR-------------ILALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQ

Query:  ILRGDREDISEVGALMCKVRHMFHDSEVCLPLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWP
        ++  D    S++G ++  +R       +    F P   N VAH LA  A+     ++W+E +P
Subjt:  ILRGDREDISEVGALMCKVRHMFHDSEVCLPLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWP

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]2.3e-1740.41Show/hide
Query:  ALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMF---HDSE
        A R  + VAG G I+R+S G V  T + LL    +VD  E  A+  G+ LA + GF    +E+DSLR+  +L  D  D SEVG L C V  +F   H   
Subjt:  ALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMF---HDSE

Query:  VCLPLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWPLELDHLVAAD
        V    FT R GN  AH LA +A+     ++W+EEWP E+  ++A D
Subjt:  VCLPLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWPLELDHLVAAD

XP_024037110.1 uncharacterized protein LOC112097050 [Citrus clementina]4.7e-1837.86Show/hide
Query:  ALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMFHDSEVCL
        AL    GV G GCI+RN +G VM  V    P  G+V++AEALA+L G++LA ++  S   +ESDS  ++  +        EV  ++C++R +   +    
Subjt:  ALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMFHDSEVCL

Query:  PLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWPLELDHLV
          +TP   N VAH LA MA+   + RVWI+E P+E+  L+
Subjt:  PLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWPLELDHLV

TrEMBL top hitse value%identityAlignment
A0A1S8ABJ9 Ribonuclease H-like superfamily protein (Fragment)2.3e-1837.86Show/hide
Query:  ALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMFHDSEVCL
        AL    GV G GCI+RN +G VM  V    P  G+V++AEALA+L G++LA ++  S   +ESDS  ++  +        EV  ++C++R +   +    
Subjt:  ALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMFHDSEVCL

Query:  PLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWPLELDHLV
          +TP   N VAH LA MA+   + RVWI+E P+E+  L+
Subjt:  PLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWPLELDHLV

A0A5C7GV88 RNase H domain-containing protein2.8e-1626.67Show/hide
Query:  RVQSIPQLPLDSSLSVLVSSSGQWDRTMVRDNFNQEECDLICSLPVGCD-QSDVQIWHFEKSGVYSVRSGYCFALCSRFQGRPSSSNADN---LRVSLGG
        +V S   LP   S+S L+ S G+W   +V   FN+EE  LI  +P+    + D  +WH++K G +SV+S Y  AL  R     SSS+       R+ L  
Subjt:  RVQSIPQLPLDSSLSVLVSSSGQWDRTMVRDNFNQEECDLICSLPVGCD-QSDVQIWHFEKSGVYSVRSGYCFALCSRFQGRPSSSNADN---LRVSLGG

Query:  GFSKNLRCSCGQFGISVISTAGYVLW----------------------WSRIL--------ALRPTTGVAGGGCILRNSKGQVMFTV---VFLLPVCGNV
            NL   CG  G+ V  +  + LW                      W R +             T + G   +LR   G+++  V   + L+P    V
Subjt:  GFSKNLRCSCGQFGISVISTAGYVLW----------------------WSRIL--------ALRPTTGVAGGGCILRNSKGQVMFTV---VFLLPVCGNV

Query:  DLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMFHDSEVCLPLFTPREGNQVAHGLAHMAVG
        ++AEA ++  G+ +A D G   + +ESD++ ++ +  G      +V  ++  ++ +    E    ++ PR  N+VAH +A  A+G
Subjt:  DLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMFHDSEVCLPLFTPREGNQVAHGLAHMAVG

A0A5C7ITL2 RNase H domain-containing protein2.1e-1636.36Show/hide
Query:  ALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMFHDSEVCL
        A R   G +G GC++R+S G V  ++     VC    +AE LA+L G  LA +LG     +ESD+L +++ +R     +SEVG ++  +  +F    V  
Subjt:  ALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMFHDSEVCL

Query:  PLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWPLELDHLVAAD
          F PR  N+V HGLA +AVG     VW+ + PL ++ LV  D
Subjt:  PLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWPLELDHLVAAD

A0A5C7IVJ7 RNase H domain-containing protein5.0e-1827Show/hide
Query:  SGQWDRTMVRDNFNQEECDLICSLPVG-CDQSDVQIWHFEKSGVYSVRSGYCFALCSRFQGRPSSSNADNLRVSLGG---------GFSKNLRCSCGQFG
        SG W+  +++D F +E+   I ++P     + D   WHF K+G YSV SGY  ++        S  N  N +V + G           + +   SC    
Subjt:  SGQWDRTMVRDNFNQEECDLICSLPVG-CDQSDVQIWHFEKSGVYSVRSGYCFALCSRFQGRPSSSNADNLRVSLGG---------GFSKNLRCSCGQFG

Query:  ISVISTAGYVLWWSR-------------ILALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQ
         SV    G +  WS              + AL   + + G G I+R+  G VM +    L +    D+AEA+ +L G+ LA +     L VESD+  ++ 
Subjt:  ISVISTAGYVLWWSR-------------ILALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQ

Query:  ILRGDREDISEVGALMCKVRHMFHDSEVCLPLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWP
        ++  D    S++G ++  +R       +    F P   N VAH LA  A+     ++W+E +P
Subjt:  ILRGDREDISEVGALMCKVRHMFHDSEVCLPLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWP

A0A6J1DBJ7 uncharacterized protein LOC1110189731.1e-1740.41Show/hide
Query:  ALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMF---HDSE
        A R  + VAG G I+R+S G V  T + LL    +VD  E  A+  G+ LA + GF    +E+DSLR+  +L  D  D SEVG L C V  +F   H   
Subjt:  ALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHMF---HDSE

Query:  VCLPLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWPLELDHLVAAD
        V    FT R GN  AH LA +A+     ++W+EEWP E+  ++A D
Subjt:  VCLPLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWPLELDHLVAAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGTGCAATCCATTCCTCAGTTGCCTTTGGATAGCTCATTAAGTGTGTTGGTGTCATCGTCGGGCCAGTGGGATCGGACTATGGTGCGAGATAATTTTAACCAAGA
GGAATGTGATCTGATTTGTAGTCTCCCTGTTGGTTGTGATCAGTCGGATGTTCAAATTTGGCATTTTGAGAAGTCTGGTGTTTATTCGGTTCGAAGTGGCTACTGTTTTG
CCTTATGTTCACGTTTCCAGGGGCGTCCGTCATCCTCAAATGCTGATAATCTTCGGGTAAGCTTGGGTGGCGGGTTTTCGAAGAATTTGCGGTGTTCCTGTGGGCAATTT
GGAATCTCTGTAATCAGTACTGCTGGTTACGTGTTGTGGTGGAGTAGGATCTTGGCTCTTCGCCCAACGACTGGTGTTGCAGGTGGGGGTTGCATTCTTCGAAATTCAAA
GGGTCAAGTAATGTTCACGGTAGTTTTCCTCCTTCCGGTCTGTGGGAATGTGGATTTGGCCGAAGCTCTAGCTCTTTTGCGGGGTGTTGAGCTTGCTTGTGACTTGGGAT
TCTCTTGGCTGCATGTGGAGTCTGACTCTTTAAGGTTGATTCAAATCCTTCGGGGTGATAGGGAGGATATTTCTGAGGTGGGTGCTCTGATGTGTAAGGTTCGCCATATG
TTCCATGATTCTGAGGTCTGTCTTCCTCTGTTCACCCCACGTGAGGGGAATCAGGTTGCTCATGGTTTGGCTCATATGGCGGTGGGGGGTTGTTCGGACAGAGTTTGGAT
TGAGGAGTGGCCTTTGGAGTTGGACCACCTTGTGGCTGCTGATCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTGTGCAATCCATTCCTCAGTTGCCTTTGGATAGCTCATTAAGTGTGTTGGTGTCATCGTCGGGCCAGTGGGATCGGACTATGGTGCGAGATAATTTTAACCAAGA
GGAATGTGATCTGATTTGTAGTCTCCCTGTTGGTTGTGATCAGTCGGATGTTCAAATTTGGCATTTTGAGAAGTCTGGTGTTTATTCGGTTCGAAGTGGCTACTGTTTTG
CCTTATGTTCACGTTTCCAGGGGCGTCCGTCATCCTCAAATGCTGATAATCTTCGGGTAAGCTTGGGTGGCGGGTTTTCGAAGAATTTGCGGTGTTCCTGTGGGCAATTT
GGAATCTCTGTAATCAGTACTGCTGGTTACGTGTTGTGGTGGAGTAGGATCTTGGCTCTTCGCCCAACGACTGGTGTTGCAGGTGGGGGTTGCATTCTTCGAAATTCAAA
GGGTCAAGTAATGTTCACGGTAGTTTTCCTCCTTCCGGTCTGTGGGAATGTGGATTTGGCCGAAGCTCTAGCTCTTTTGCGGGGTGTTGAGCTTGCTTGTGACTTGGGAT
TCTCTTGGCTGCATGTGGAGTCTGACTCTTTAAGGTTGATTCAAATCCTTCGGGGTGATAGGGAGGATATTTCTGAGGTGGGTGCTCTGATGTGTAAGGTTCGCCATATG
TTCCATGATTCTGAGGTCTGTCTTCCTCTGTTCACCCCACGTGAGGGGAATCAGGTTGCTCATGGTTTGGCTCATATGGCGGTGGGGGGTTGTTCGGACAGAGTTTGGAT
TGAGGAGTGGCCTTTGGAGTTGGACCACCTTGTGGCTGCTGATCTATGA
Protein sequenceShow/hide protein sequence
MRVQSIPQLPLDSSLSVLVSSSGQWDRTMVRDNFNQEECDLICSLPVGCDQSDVQIWHFEKSGVYSVRSGYCFALCSRFQGRPSSSNADNLRVSLGGGFSKNLRCSCGQF
GISVISTAGYVLWWSRILALRPTTGVAGGGCILRNSKGQVMFTVVFLLPVCGNVDLAEALALLRGVELACDLGFSWLHVESDSLRLIQILRGDREDISEVGALMCKVRHM
FHDSEVCLPLFTPREGNQVAHGLAHMAVGGCSDRVWIEEWPLELDHLVAADL