CuGenDBv2

Gene ID	Lcy06g016680
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribonuclease H-like superfamily protein
Genome location	Chr06:38153997..38155250
RNA-Seq Expression	Lcy06g016680
Synteny	Lcy06g016680
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_030477990.1 uncharacterized protein LOC115695032 [Cannabis sativa]

2.1e-80

38.9

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Query:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM
        Y  ASGQ +N  KS M FSPN  E  + + +NI+GM + E    YLG+P+   R +++ F  +K+R+WK L  W  K FS+GGKE L+K+V Q+IPT+ M
Subjt:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM

Query:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS
        SCF+LP   C +I  LM+ FW                                     ALLAKQ WR+F +P  L+ +V+KGRY   ++ L+A      S
Subjt:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS

Query:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPI-QVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWI
        + W+G  W R LL  GIR QVGNG  I    DPWIP  +   P+   G P N     VAD+ITP K W++ KL    +  DV  I ++P+S     D W+
Subjt:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPI-QVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWI

Query:  WHYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKT
        WH +  G Y VKSGY +A  L +D  ++      +WW + W LK+P K+K+F WKA H  LP    L+KRK      C +C   +E++ HA+  CK A+ 
Subjt:  WHYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKT

Query:  I
        +
Subjt:  I

XP_030496634.1 uncharacterized protein LOC115712492 [Cannabis sativa]

1.9e-81

38.25

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Query:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM
        Y  ASGQ++N TKS M FSPN  +  +D     +GM + +   RYLG+P+   R ++E F  VK+R+W+ L  W  K FS+GGKE L+K+V Q+IPT+ M
Subjt:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM

Query:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS
        SCFRLPST C  +  +MA FW                                     ALLAKQ WRI   PN L+S+++K RY  N N L A +  + S
Subjt:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS

Query:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWIW
        + W+G  W R LL  G+R ++GNG T+    D WIP  T FKP+     N  D   V+ FIT  + W++  L       DV+ I  IP+S     D+ IW
Subjt:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWIW

Query:  HYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKTI
        H++  GCY+V SG+ LA  L  +  + +  S   WW T W+L++PSK+K+F W+     LP    L +RK+  S  C +C   +E++ HAL  C  A+ +
Subjt:  HYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKTI

XP_030497600.1 uncharacterized protein LOC115713257 [Cannabis sativa]

1.8e-84

39.21

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Query:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM
        Y  ASGQ++N  KS M FSPN  E V+ + + I+GM +      YLG+P+   R + + F  +K+R+WK +  W  K FS+GGKE L+K+V QAIPT+ M
Subjt:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM

Query:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS
        SCFRL +  C  I  +MARFW                                     A LAKQ WRIF +PN L+S+V+KGRY +  + + A +    S
Subjt:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS

Query:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWIW
        + W+G VW R LLS G+  ++G+GT ++   D WIP    FKP++        + +VAD+IT ++ WDLE L    +  D++ I  IP+S  +  D+W W
Subjt:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWIW

Query:  HYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKTI
        HY  +G Y+VKSGY LA  L N   S+S  SQ+AWW   W L +PSK+++F W+  +  LP    L+ RK+  S  C +C + +E+I HAL  C  AK++
Subjt:  HYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKTI

Query:  CDH
          H
Subjt:  CDH

XP_030508852.1 uncharacterized protein LOC115723496 [Cannabis sativa]

4.2e-81

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Query:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM
        Y  ASGQV+N  K  + FS N R+  +   K+++GM +     +YLG+PS   +++++ F G+  ++WK L  WK   FS GGKE L+K+V QAIPT+ M
Subjt:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM

Query:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS
        SCFRLP TLC  I  +MARFW                                     ALLAKQ WRI   PN L+S +++ RY  N N L A + SN S
Subjt:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS

Query:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWIW
        + WR  VW + LL  G+R +VG+G  I+   D W+P  TTFKP     P+   N +VAD IT  + WD+  L     + D+N + +IP+S    +D  IW
Subjt:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWIW

Query:  HYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKTI
        + S  G Y+VKSGY  A+ L     ST   S + WW   W LK+P K+++F+WK FH  LP    L++R +  SP C IC    ET+ HAL  C RAK +
Subjt:  HYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKTI

XP_030509050.1 uncharacterized protein LOC115723712 [Cannabis sativa]

2.7e-80

39.5

Show/hide

Query:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM
        Y  ASGQ++N  KS + FSPN R   +   ++++ M +     +YLG+PS   R + + F G+  ++WK +  W+ + FS+GGKE L+K+V QAIPT+ M
Subjt:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM

Query:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS
        SCF+LP  LC+ I +LM+RFW                                     ALLAKQ WRI   P+ L+++V+K RY      L A   +  S
Subjt:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS

Query:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWIW
        + W+  VW + LL  G+R ++G+G  ++    PWIP  + FKP+    P ++D K VADFIT S+ WD+ KL+   T  DV+ I +IP+S    ED  +W
Subjt:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWIW

Query:  HYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKTI
        HYS  G Y+VKSGYKLA  +  D    S  + + WW   W LK+PSKI++F W+A+HE LPT   L  R +  SP+C +C+   ETI+HA   C RAK +
Subjt:  HYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKTI

TrEMBL top hits

e value

%identity

Alignment

A0A803NM27 Uncharacterized protein

2.4e-82

39.65

Show/hide

Query:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM
        Y  ASGQ +N  KS M FSPN  E  + + +NI+GM + E    YLG+P+   R +++ F  +K+R+WK L  W  K FS+GGKE L+K+V Q+IPT+ M
Subjt:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM

Query:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS
        SCF+LP   C +I  LM+ FW                                     ALLAKQ WR+F +P  L+ +V+KGRY    + L+A      S
Subjt:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS

Query:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQ-VGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWI
        + W+GF W R LL  G+R QVGNG  I    DPWIP  + F PI   G P N     VAD+ITP K W++ KL    +  DV  I ++P+S     D W+
Subjt:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQ-VGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWI

Query:  WHYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKT
        WH +  G Y VKSGY +A  L ++   +      +WW + W LK+P K+KLF WKA H  LP    L+KRK   S  C +C   +E++ HA+  CK A+ 
Subjt:  WHYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKT

Query:  I
        +
Subjt:  I

A0A803PIB6 Uncharacterized protein

8.7e-85

39.21

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Query:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM
        Y  ASGQ++N  KS M FSPN  E V+ + + I+GM +      YLG+P+   R + + F  +K+R+WK +  W  K FS+GGKE L+K+V QAIPT+ M
Subjt:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM

Query:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS
        SCFRL +  C  I  +MARFW                                     A LAKQ WRIF +PN L+S+V+KGRY +  + + A +    S
Subjt:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS

Query:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWIW
        + W+G VW R LLS G+  ++G+GT ++   D WIP    FKP++        + +VAD+IT ++ WDLE L    +  D++ I  IP+S  +  D+W W
Subjt:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWIW

Query:  HYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKTI
        HY  +G Y+VKSGY LA  L N   S+S  SQ+AWW   W L +PSK+++F W+  +  LP    L+ RK+  S  C +C + +E+I HAL  C  AK++
Subjt:  HYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKTI

Query:  CDH
          H
Subjt:  CDH

A0A803PM68 Uncharacterized protein

5.7e-84

39.8

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Query:  KYELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFI
        KY +ASGQVVN  KS M F   V + ++  +  +MG++VV+N G+YLG+PS   R++++ F+ +K +VW  L+GWKG FFS  GKE LIK++ QAIPT+ 
Subjt:  KYELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFI

Query:  MSCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNC
        MSCFRLP    + IH + ARFW                                     ALLAKQ+WR    PN L SKV+K  Y  N+ +L A   ++ 
Subjt:  MSCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNC

Query:  SVFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWI
        S  WR  VW + ++  G R ++GNG ++    DPW+P+  TFK     +P+  +   V D +  +  WD E +R      D  +I  +P S    EDK +
Subjt:  SVFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWI

Query:  WHYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRK-KFETIDHALCGCK
        WHYSKNG YSV+SGY++A  L      ++ ++ + WW  LW LKIP K+K F+WK  H  LPTN  L  RK+ V P C  C    +E + HAL GC+
Subjt:  WHYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRK-KFETIDHALCGCK

A0A803Q8E0 Uncharacterized protein

3.1e-82

38.5

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Query:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM
        Y  ASGQ++N +KS M FSPN  +  +D   + +GM + +   RYLG+P+   R ++E F  VK+R+W+ L  W  K FS+GGKE L+K+V Q+IPT+ M
Subjt:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM

Query:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS
        SCFRLPST C  +  +MA FW                                     ALLAKQ WRIF  PN L+S+++K RY  N N L A +  + S
Subjt:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS

Query:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWIW
        + W+G  W R LL  G+R ++GNG T+    D WIP  T FKP+     N  D+  V+ FIT  + W++  L       DV+ I  IP+S     D+ IW
Subjt:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWIW

Query:  HYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKTI
        H++ +GCY+V SG+ LA  L  +  + +  S   WW T W+L +PSK+K+F W+     LP    L +RK+  S  C +C   +E+I HAL  C  A+ +
Subjt:  HYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKTI

A0A803QC00 Uncharacterized protein

1.0e-80

38.9

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Query:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM
        Y  ASGQ +N  KS M FSPN  E  + + +NI+GM + E    YLG+P+   R +++ F  +K+R+WK L  W  K FS+GGKE L+K+V Q+IPT+ M
Subjt:  YELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIM

Query:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS
        SCF+LP   C +I  LM+ FW                                     ALLAKQ WR+F +P  L+ +V+KGRY   ++ L+A      S
Subjt:  SCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCS

Query:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPI-QVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWI
        + W+G  W R LL  GIR QVGNG  I    DPWIP  +   P+   G P N     VAD+ITP K W++ KL    +  DV  I ++P+S     D W+
Subjt:  VFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPI-QVGQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWI

Query:  WHYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKT
        WH +  G Y VKSGY +A  L +D  ++      +WW + W LK+P K+K+F WKA H  LP    L+KRK      C +C   +E++ HA+  CK A+ 
Subjt:  WHYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKT

Query:  I
        +
Subjt:  I

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

5.7e-25

23.41

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Query:  RSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIMSCFRLPSTLCDDIHKLMARF---------------W-----------------
        R  ++ F  + +RV   + GW+ K  S  G+ TL K+V  ++P   MS   LP ++ + + +L   F               W                 
Subjt:  RSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFIMSCFRLPSTLCDDIHKLMARF---------------W-----------------

Query:  -----ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAP---IKSNCSVFWRGF-VWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQP
             AL++K  WR+    N L + V++ +Y     I ++     K + S  WR   +  R ++S+G+    G+G  I F+ D W+  +   +     +P
Subjt:  -----ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAP---IKSNCSVFWRGF-VWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQP

Query:  NNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSV-NEEDKWIWHYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKI
         + D  V  D   P +GWD  K+    T      + A+ +  V    D+  W +S++G +SV+S Y+  M   +++   ++ S   ++  LW +++P ++
Subjt:  NNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSV-NEEDKWIWHYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKI

Query:  KLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGC
        K F+W   ++ + T     +R +  S  C +C+   E++ H L  C
Subjt:  KLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGC

P93295 Uncharacterized mitochondrial protein AtMg00310

1.5e-12

27.63

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Query:  AIPTFIMSCFRLPSTLCDDIHKLMARFW--------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILN
        A+P + MSCFRL   LC  +   M  FW                                      ALLAKQ +RI   P+ L+S++++ RY  + +++ 
Subjt:  AIPTFIMSCFRLPSTLCDDIHKLMARFW--------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILN

Query:  APIKSNCSVFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPI
          + +  S  WR  +  R LLS G+ + +G+G     + D WI  ET   P+
Subjt:  APIKSNCSVFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPI

Arabidopsis top hits

e value

%identity

Alignment

AT2G22440.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT4G29090.1)

5.2e-05

32.97

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Query:  DPWIPKETTFKPIQVGQPNNQDNKV-VADFITPSKG-WDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWIWHYSKNGCYSVKSGYKLAMQL
        DPWIP  T          N +D+ + V D I  +   W L++L+ ++   D+ +I  I  S     D + W ++K+G Y+VKSGY +A  L
Subjt:  DPWIPKETTFKPIQVGQPNNQDNKV-VADFITPSKG-WDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWIWHYSKNGCYSVKSGYKLAMQL

AT3G09510.1 Ribonuclease H-like superfamily protein

3.3e-20

29.26

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Query:  IKGRYAYNMNILNAPIKSNCSVFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPK--------ETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEK
        +K RY  +++IL+A ++   S  W   +   +LL  G R  +G+G  I    D  +          E T+K + +   NN   +  + +      WD  K
Subjt:  IKGRYAYNMNILNAPIKSNCSVFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPK--------ETTFKPIQVGQPNNQDNKVVADFITPSKGWDLEK

Query:  LRGVVTEEDVNIIAAIPISSVNEEDKWIWHYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGT------LWSLKIPSKIKLFIWKAFHECLPTNYC
        +   V + D   I  I ++   + DK IW+Y+  G Y+V+SGY L   L +D  ST++ +     G+      +W+L I  K+K F+W+A  + L T   
Subjt:  LRGVVTEEDVNIIAAIPISSVNEEDKWIWHYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGT------LWSLKIPSKIKLFIWKAFHECLPTNYC

Query:  LWKRKMDVSPKCDICRKKFETIDHALCGC
        L  R M + P C  C ++ E+I+HAL  C
Subjt:  LWKRKMDVSPKCDICRKKFETIDHALCGC

AT3G26855.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

9.1e-10

48.44

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Query:  WWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAK
        W G +WSLKI  KIKL IWKA +  LP    L  R + + P C  CR  FETI H L  C  A+
Subjt:  WWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAK

AT4G29090.1 Ribonuclease H-like superfamily protein

2.1e-30

26.35

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Query:  AIPTFIMSCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNA
        A+PT+ M+CF LP T+C  I  ++A FW                                     ALL KQ+WR+ + P  L++KV K RY +  + LNA
Subjt:  AIPTFIMSCFRLPSTLCDDIHKLMARFW-------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNA

Query:  PIKSNCSVFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPS-------KGWDLEKLRGVVTEEDVNIIAA
        P+ S  S  W+    ++ +L  G R  VGNG  I  +   W+  +     +++ +   Q+   V+  +  S       + W  + +  +  E +  +I  
Subjt:  PIKSNCSVFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQVGQPNNQDNKVVADFITPS-------KGWDLEKLRGVVTEEDVNIIAA

Query:  IPISSVNEEDKWIWHYSKNGCYSVKSGYKLAMQLCNDIAS---TSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKK
        +        D + W Y+ +G Y+VKSGY +  Q+ N  +S    S  S    +  +W  +   KI+ F+WK     LP    L  R +     C  C   
Subjt:  IPISSVNEEDKWIWHYSKNGCYSVKSGYKLAMQLCNDIAS---TSVKSQKAWWGTLWSLKIPSKIKLFIWKAFHECLPTNYCLWKRKMDVSPKCDICRKK

Query:  FETIDHALCGCKRAK
         ET++H L  C  A+
Subjt:  FETIDHALCGCKRAK

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.0e-13

27.63

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Query:  AIPTFIMSCFRLPSTLCDDIHKLMARFW--------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILN
        A+P + MSCFRL   LC  +   M  FW                                      ALLAKQ +RI   P+ L+S++++ RY  + +++ 
Subjt:  AIPTFIMSCFRLPSTLCDDIHKLMARFW--------------------------------------ALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILN

Query:  APIKSNCSVFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPI
          + +  S  WR  +  R LLS G+ + +G+G     + D WI  ET   P+
Subjt:  APIKSNCSVFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPI

Sequences

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CDS sequence

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ATGGAGGAAGAAAATGAAAAAGAAGGAAATAAATATGAATTAGCCTCGGGCCAAGTTGTTAATGTAACTAAATCAGCGATGTTCTTTTCGCCTAACGTGAGAGAGGAGGT
CCGTGATAATATAAAAAATATTATGGGCATGCAAGTTGTTGAGAATTTAGGACGATATCTAGGGGTACCGTCATCTTTCACTAGAAGCAGGAGAGAGGATTTTAAGGGGG
TTAAACAAAGAGTTTGGAAAACCTTGCAAGGTTGGAAAGGGAAATTTTTCTCTATGGGTGGAAAGGAGACTCTCATTAAAAGTGTGGCTCAAGCTATACCCACTTTTATA
ATGAGTTGTTTCCGCCTTCCAAGTACTCTTTGTGATGACATCCACAAATTGATGGCAAGATTCTGGGCGTTACTTGCAAAGCAAGTTTGGCGAATTTTCACTTCTCCAAA
TCAGCTGGTCTCCAAAGTCATAAAAGGAAGGTATGCTTACAATATGAATATTCTGAATGCACCAATTAAATCCAACTGCTCTGTTTTCTGGAGAGGTTTTGTTTGGGCGC
GTAGTCTACTTTCCAACGGAATTCGCAAACAAGTAGGCAATGGAACTACCATCCATTTTTTCGGGGACCCATGGATTCCAAAGGAAACCACCTTCAAGCCAATTCAAGTT
GGTCAGCCGAACAATCAAGATAATAAAGTGGTAGCTGATTTTATCACTCCGTCAAAGGGGTGGGATTTGGAGAAGCTTCGTGGTGTCGTGACGGAGGAGGATGTAAACAT
AATTGCAGCAATTCCTATAAGTTCAGTTAACGAAGAGGACAAATGGATTTGGCATTATTCCAAAAATGGGTGTTATTCGGTAAAAAGTGGATATAAATTGGCCATGCAGC
TTTGTAATGATATAGCGTCAACTTCAGTCAAAAGCCAGAAAGCGTGGTGGGGAACATTATGGAGCTTAAAAATACCTTCCAAGATTAAGCTGTTTATATGGAAGGCATTC
CATGAGTGTTTACCAACGAACTATTGCCTCTGGAAAAGGAAGATGGATGTGTCTCCTAAATGCGATATATGTAGGAAGAAGTTCGAAACTATTGACCATGCGCTCTGTGG
TTGTAAAAGAGCAAAGACAATTTGTGATCATATTTTCCAATGA

mRNA sequence

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Protein sequence

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MEEENEKEGNKYELASGQVVNVTKSAMFFSPNVREEVRDNIKNIMGMQVVENLGRYLGVPSSFTRSRREDFKGVKQRVWKTLQGWKGKFFSMGGKETLIKSVAQAIPTFI
MSCFRLPSTLCDDIHKLMARFWALLAKQVWRIFTSPNQLVSKVIKGRYAYNMNILNAPIKSNCSVFWRGFVWARSLLSNGIRKQVGNGTTIHFFGDPWIPKETTFKPIQV
GQPNNQDNKVVADFITPSKGWDLEKLRGVVTEEDVNIIAAIPISSVNEEDKWIWHYSKNGCYSVKSGYKLAMQLCNDIASTSVKSQKAWWGTLWSLKIPSKIKLFIWKAF
HECLPTNYCLWKRKMDVSPKCDICRKKFETIDHALCGCKRAKTICDHIFQ

Lcy06g016680 (gene) of Sponge gourd (P93075) v1 genome